mRNA_H-canaliculatus_F_contig10788.737.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10788.737.1
Unique NamemRNA_H-canaliculatus_F_contig10788.737.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10788.737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10788contigH-canaliculatus_F_contig10788:2552..3342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10788.737.1prot_H-canaliculatus_F_contig10788.737.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10788 2579..3342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.429127-UTR-H-canaliculatus_F_contig10788:2551..25781622928742.429127-UTR-H-canaliculatus_F_contig10788:2551..2578Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10788 2552..2578 -
1696845546.7724404-UTR-H-canaliculatus_F_contig10788:2551..25781696845546.7724404-UTR-H-canaliculatus_F_contig10788:2551..2578Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10788 2552..2578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.441758-CDS-H-canaliculatus_F_contig10788:2578..26371622928742.441758-CDS-H-canaliculatus_F_contig10788:2578..2637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 2579..2637 -
1696845546.7831097-CDS-H-canaliculatus_F_contig10788:2578..26371696845546.7831097-CDS-H-canaliculatus_F_contig10788:2578..2637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 2579..2637 -
1622928742.4586267-CDS-H-canaliculatus_F_contig10788:3257..33421622928742.4586267-CDS-H-canaliculatus_F_contig10788:3257..3342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 3258..3342 -
1696845546.7919576-CDS-H-canaliculatus_F_contig10788:3257..33421696845546.7919576-CDS-H-canaliculatus_F_contig10788:3257..3342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 3258..3342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10788.737.1

>prot_H-canaliculatus_F_contig10788.737.1 ID=prot_H-canaliculatus_F_contig10788.737.1|Name=mRNA_H-canaliculatus_F_contig10788.737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
QGSGEQVNLEPPPKLLTPQGKSSKGAQQGKPHEGIVHTEQAEDRRLP*
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mRNA from alignment at H-canaliculatus_F_contig10788:2552..3342-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10788.737.1 ID=mRNA_H-canaliculatus_F_contig10788.737.1|Name=mRNA_H-canaliculatus_F_contig10788.737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=791bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10788:2552..3342- (Hapterophycus canaliculatus Oshoro5f female)
CAAGGCTCGGGAGAACAAGTTAATCTGGAACCGCCCCCGAAACTTCTGAC
GCCACAGGGAAAGAGCTCGAAAGGCGCTCAACAAGGTGGGGGAGAGGATC
GGCGTGGGTCGCCACACTCCTTTCGAGGCTGTGGTGGAGCAGCAGCAGCA
GCAGTAGCAACAACAGCAGCAACAACAGCAGCATTAGTGGGAAAACTGGG
CGCCTCGTGGCGGGCTAAAACGAAGTTCGTAGAGTATACACCAGGTGGCC
TCACAGTCGGCAAGAACTAAAGGCTCAAGCGAGTGTAGTCTGGGTAGTCT
GGGCAACACACACGCCGGCGTTTGCGGTCGGAAGTGGCCTAACTTGTGGC
ACGTCGCAATTTTACGCGATCACGGCGGGCGGGTCGAGCAGCCAGAAGAT
CGCTACCGGAAGGGTCGATCTTTTGGCCAGTCCTCCATGGTCGCGGTGCG
TGAGATGAAGATCTGACGCGAGTCTCTACACGCGCTCGCGGGCTGAAAGC
TGGAAGGCGAAGAGAGCGGTTCGGTGAAGGGCGTTTTGTATCTAGCTGTG
ACCTCATTGTCGAGTGCCGTTTAGCCTTACCACTGACAAATAAAAACGGG
AGAAAACTGCCGCCAAGCTCCTTCCGTCTCCTGCTTACTAGGTAGAGTCT
CTTCGCGTCTTCGCTTGAAACGTGTCTTGTATTCGCGATATCGTGCGCTC
GCCAGGCAAGCCTCATGAGGGAATCGTGCATACCGAGCAAGCAGAGGATC
GTCGGTTGCCGTGAGAGTGTTAAGGGTACATCAACGCGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10788:2552..3342-

>mRNA_H-canaliculatus_F_contig10788.737.1 ID=mRNA_H-canaliculatus_F_contig10788.737.1|Name=mRNA_H-canaliculatus_F_contig10788.737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10788:2552..3342- (Hapterophycus canaliculatus Oshoro5f female)
CAAGGCTCGGGAGAACAAGTTAATCTGGAACCGCCCCCGAAACTTCTGAC
GCCACAGGGAAAGAGCTCGAAAGGCGCTCAACAAGCAAGGCTCGGGAGAA
CAAGTTAATCTGGAACCGCCCCCGAAACTTCTGACGCCACAGGGAAAGAG
CTCGAAAGGCGCTCAACAAGGCAAGCCTCATGAGGGAATCGTGCATACCG
AGCAAGCAGAGGATCGTCGGTTGCCGTGAGCAAGCCTCATGAGGGAATCG
TGCATACCGAGCAAGCAGAGGATCGTCGGTTGCCGTGA
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