mRNA_H-canaliculatus_F_contig10787.736.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10787.736.1
Unique NamemRNA_H-canaliculatus_F_contig10787.736.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10787.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10787contigH-canaliculatus_F_contig10787:4033..4535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10787.736.1prot_H-canaliculatus_F_contig10787.736.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10787 4142..4441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.3595235-UTR-H-canaliculatus_F_contig10787:4032..41411622928742.3595235-UTR-H-canaliculatus_F_contig10787:4032..4141Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10787 4033..4141 +
1696845546.7366664-UTR-H-canaliculatus_F_contig10787:4032..41411696845546.7366664-UTR-H-canaliculatus_F_contig10787:4032..4141Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10787 4033..4141 +
1622928742.3912873-UTR-H-canaliculatus_F_contig10787:4441..45351622928742.3912873-UTR-H-canaliculatus_F_contig10787:4441..4535Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10787 4442..4535 +
1696845546.7621522-UTR-H-canaliculatus_F_contig10787:4441..45351696845546.7621522-UTR-H-canaliculatus_F_contig10787:4441..4535Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10787 4442..4535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.376609-CDS-H-canaliculatus_F_contig10787:4141..44411622928742.376609-CDS-H-canaliculatus_F_contig10787:4141..4441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10787 4142..4441 +
1696845546.7508345-CDS-H-canaliculatus_F_contig10787:4141..44411696845546.7508345-CDS-H-canaliculatus_F_contig10787:4141..4441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10787 4142..4441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10787.736.1

>prot_H-canaliculatus_F_contig10787.736.1 ID=prot_H-canaliculatus_F_contig10787.736.1|Name=mRNA_H-canaliculatus_F_contig10787.736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MHSQTNVAISSGVRMGRRTPRSMKRCSVAEVFCSARRRSSWGSRSCGPSL
GDDGFALDQSRRTESQKKIVSQPVYAPLHLSPTFALSGLPRRRANCPHW*
back to top

mRNA from alignment at H-canaliculatus_F_contig10787:4033..4535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10787.736.1 ID=mRNA_H-canaliculatus_F_contig10787.736.1|Name=mRNA_H-canaliculatus_F_contig10787.736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=503bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10787:4033..4535+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGTCGGGATTTCCGGGGCTCCGAGGCTGGGGCATCCGCGCTCGTGC
CGTGAGATAAGACTCTACCCCACGCCGCGCTCCGAACATGCGGTCGCCCT
ATTTGTACGATGCACTCTCAGACGAATGTGGCAATCTCGTCTGGAGTGCG
GATGGGACGACGAACCCCGCGGAGCATGAAACGTTGCTCTGTAGCCGAAG
TTTTCTGCAGCGCTCGCCGGAGATCCTCGTGGGGTTCCCGGTCGTGCGGC
CCCTCTCTTGGTGACGACGGGTTTGCTCTGGACCAGAGTCGACGAACAGA
AAGCCAGAAGAAAATAGTCAGCCAGCCCGTGTACGCTCCGCTCCATCTAT
CCCCGACGTTTGCTCTCTCTGGCCTGCCTCGACGGCGTGCCAACTGCCCC
CACTGGTAGATACGCCTGGTGTACCCCCCTGCCCTGCCCCGTCACCGTCT
CCGGAGATAGATGGCGGGGTCACGGGGCAGATGACTTAAGTAAAGTAAGA
GAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10787:4033..4535+

>mRNA_H-canaliculatus_F_contig10787.736.1 ID=mRNA_H-canaliculatus_F_contig10787.736.1|Name=mRNA_H-canaliculatus_F_contig10787.736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10787:4033..4535+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACTCTCAGACGAATGTGGCAATCTCGTCTGGAGTGCGGATGGGACG
ACGAACCCCGCGGAGCATGAAACGTTGCTCTGTAGCCGAAGTTTTCTGCA
GCGCTCGCCGGAGATCCTCGTGGGGTTCCCGGTCGTGCGGCCCCTCTCTT
GGTGACGACGGGTTTGCTCTGGACCAGAGTCGACGAACAGAAAGCCAGAA
GAAAATAGTCAGCCAGCCCGTGTACGCTCCGCTCCATCTATCCCCGACGT
TTGCTCTCTCTGGCCTGCCTCGACGGCGTGCCAACTGCCCCCACTGGTAG
ATGCACTCTCAGACGAATGTGGCAATCTCGTCTGGAGTGCGGATGGGACG
ACGAACCCCGCGGAGCATGAAACGTTGCTCTGTAGCCGAAGTTTTCTGCA
GCGCTCGCCGGAGATCCTCGTGGGGTTCCCGGTCGTGCGGCCCCTCTCTT
GGTGACGACGGGTTTGCTCTGGACCAGAGTCGACGAACAGAAAGCCAGAA
GAAAATAGTCAGCCAGCCCGTGTACGCTCCGCTCCATCTATCCCCGACGT
TTGCTCTCTCTGGCCTGCCTCGACGGCGTGCCAACTGCCCCCACTGGTAG
back to top