mRNA_H-canaliculatus_F_contig10774.728.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10774.728.1
Unique NamemRNA_H-canaliculatus_F_contig10774.728.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10774.728.1 vs. uniprot
Match: A0A6H5KKS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS0_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 1.360e-108
Identity = 157/198 (79.29%), Postives = 172/198 (86.87%), Query Frame = 1 
Query:    1 MYATSLPPRPNPHARVAENYAPRFSPGELPLLPVNWIPSWRSPPSKVWGD-VGVKNSSIGATSAAASYASGXXXXXATARPQTTGSIRFVRDSSARKMWSSLRENCTGRLHSVPTHNISDRSIDSGLIPRYLLDGSVPPPEGKRASSLDYFPPCERPSTVPTIRMGHQYRLLRETPTKRLDAYKRGAVLRDGPVRIVR 591
            MYATSLPPRPNPHAR AENYAPRFSP ELPLLPVNW+PSWRSPPSK+W D  GVK    GAT+AA  Y S      A ARP+TTGSI FVRDSSAR+MW +LR+NCTGRLH+V THNISDRSIDSGLIP +LLDGSVPPP+GKRA+SLDYFPPC RP+TVP IRMGHQYRL+R+TP KRL+AYKRGAVLRDGPVRIVR
Sbjct:    1 MYATSLPPRPNPHARTAENYAPRFSPDELPLLPVNWVPSWRSPPSKIWEDPAGVKRGENGATTAATCYVS---ESAAAARPRTTGSIGFVRDSSAREMWGTLRDNCTGRLHAVQTHNISDRSIDSGLIPPHLLDGSVPPPQGKRATSLDYFPPCVRPATVPAIRMGHQYRLIRDTPAKRLEAYKRGAVLRDGPVRIVR 195
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10774.728.1 vs. uniprot
Match: D8LIB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB8_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.460e-44
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:  340 THNISDRSIDSGLIPRYLLDGSVPPPEGKRASSLDYFPPCERPSTVPTIRMGHQYRLLRETPTKRLDAYKRGAVLRDGPVRIV 588
            THNISDRSIDSGLIP +LLDGSVPPP+GKRA+SLDYFPPC RP+TVP IRMGHQYRL+R+TP KRL+AYKRGAVLRDGPVRIV
Sbjct:    4 THNISDRSIDSGLIPPHLLDGSVPPPQGKRATSLDYFPPCVRPATVPAIRMGHQYRLIRDTPAKRLEAYKRGAVLRDGPVRIV 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10774.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKS0_9PHAE1.360e-10879.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIB8_ECTSI2.460e-4486.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10774contigH-canaliculatus_F_contig10774:506..3834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_001550.1
Exons4
Model size591
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10774.728.1prot_H-canaliculatus_F_contig10774.728.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10774 506..3834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.757747-CDS-H-canaliculatus_F_contig10774:505..5901622928740.757747-CDS-H-canaliculatus_F_contig10774:505..590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 506..590 -
1696845546.1912742-CDS-H-canaliculatus_F_contig10774:505..5901696845546.1912742-CDS-H-canaliculatus_F_contig10774:505..590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 506..590 -
1622928740.7728722-CDS-H-canaliculatus_F_contig10774:1209..13761622928740.7728722-CDS-H-canaliculatus_F_contig10774:1209..1376Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 1210..1376 -
1696845546.2003238-CDS-H-canaliculatus_F_contig10774:1209..13761696845546.2003238-CDS-H-canaliculatus_F_contig10774:1209..1376Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 1210..1376 -
1622928740.786306-CDS-H-canaliculatus_F_contig10774:3198..32861622928740.786306-CDS-H-canaliculatus_F_contig10774:3198..3286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 3199..3286 -
1696845546.2098129-CDS-H-canaliculatus_F_contig10774:3198..32861696845546.2098129-CDS-H-canaliculatus_F_contig10774:3198..3286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 3199..3286 -
1622928740.8054311-CDS-H-canaliculatus_F_contig10774:3583..38341622928740.8054311-CDS-H-canaliculatus_F_contig10774:3583..3834Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 3584..3834 -
1696845546.2279532-CDS-H-canaliculatus_F_contig10774:3583..38341696845546.2279532-CDS-H-canaliculatus_F_contig10774:3583..3834Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10774 3584..3834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10774.728.1

>prot_H-canaliculatus_F_contig10774.728.1 ID=prot_H-canaliculatus_F_contig10774.728.1|Name=mRNA_H-canaliculatus_F_contig10774.728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
MYATSLPPRPNPHARVAENYAPRFSPGELPLLPVNWIPSWRSPPSKVWGD
VGVKNSSIGATSAAASYASGAAAAAATARPQTTGSIRFVRDSSARKMWSS
LRENCTGRLHSVPTHNISDRSIDSGLIPRYLLDGSVPPPEGKRASSLDYF
PPCERPSTVPTIRMGHQYRLLRETPTKRLDAYKRGAVLRDGPVRIVR
back to top

mRNA from alignment at H-canaliculatus_F_contig10774:506..3834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10774.728.1 ID=mRNA_H-canaliculatus_F_contig10774.728.1|Name=mRNA_H-canaliculatus_F_contig10774.728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3329bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10774:506..3834- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGCCACCAGCCTTCCACCACGACCGAATCCTCACGCCCGTGTTGC
AGAAAACTACGCGCCTCGTTTCTCTCCCGGTGAGCTTCCGCTGCTCCCGG
TGAATTGGATCCCTTCTTGGCGGTCTCCCCCTTCCAAAGTATGGGGAGAC
GTTGGAGTCAAGAATAGCAGTATCGGGGCAACTTCAGCTGCTGCTTCTTA
CGCGTCAGGTGCCGCCGCCGCAGCCGCAACTGCCCGACCTCAGACGACCG
GGTGAGAGAAGGAGAGGGAACGAGAGAGAGAAGAAGATCGTTGCTGCAGG
AATATTGGTTTGCTCACGGATGAGCTACAGGCGAAGAGAGAAGAGGAGCA
ACCGCGCGCAACAGTAGCGTTAACAGGAAGAACATGATTGCCTTTCAACG
TTCTTGCAGCTCTCCCACGAGGTAGAGGCTAAAGCAGCGCGTGCAGGTGT
ACCACCCCCCTGCGTTCCTTTCCTCCTTCGCCCGAAACATGTTTTGCTTC
TTTATCTTCCTCTGAGTTGCGTCTCTTTCTCTGGTTCTTTGTGCACAGAT
CGATACGATTTGTGAGGGACTCATCTGCGAGAAAGATGTGGAGCTCCCTT
CGCGAAAATTGCACCGGGCGACTCCACTCGGTGCCGGTGAGCCTCACGTG
CGAGCGTTCATGCCTCGCATTTTTTATAGCGTGGAGTCAATCAGGTCAAT
CGATGTACAATGTCAAGCAGTGCAGTCGACGCCGGTCAAGAATCACTCTG
TCAAGTGAAACTAAATGCAATCCCCCAGGAGCATAGGTGGCGCCCCCGCT
TGAGAACTTCCTTTTTTGTTCAGTCCTCGGACTTTTTTCCCTGTTGTCCT
TAATTTAGGTAGTACAGTACTCGTACAGTACTACCCAGGTATTATACAAA
GTTTTACGTGGGGGTTCTTTGCCGACCACCACAATTGATGACTAAACTTT
GTTATTGCGTAATTGCCAAGCTCTCAAGTGATGGCGCTATCTGTCCTATA
CACTAAATGCTCAGGACACTAGATGCGCAGAGAATTTCCTGCTGGTCGCT
TGGCTGGCCCGGCCGTTGACAATCGGGGCGACCGAACGATAAAACAGGCT
CGGCGACAGGGTGACAGAGGTTCTTCTCACACCAAACAATATAAAGCGCA
TCATGTTGAAGCTCCCGCTGCCCACGGTACCAAATAGTTTGCTCTCCGCT
CGACATGTAGACCAAGTGTGCTGGCCAATGTGGAAGGCTTTAAGGTAGTC
GTTTCTCACATATCTCTCGCGCACTTGGGTGATGAAGCGGTTCAGAAGCG
TTTTTGCAGCGCTGAAACTACATGCGCTACTGCAGGTCTGTAACTCCATG
GCGGATACTTGTACCTATTCAGGAAGCTGAGACTGAAGGAATTGGTTTTT
CTCCTCCGAAAGGATCCTGTTCGTCGGCCGATCGTTAGAGCATCTCTCCC
CAGTCAAGCTGCAGAGAGATTTTTTCTCGCGCTGTTCAGGATGAACTGTG
CATGACGTTGGCTCATATCGCTAGACAGAAGCAGTCATCAATCAGACGGG
GCTAGGAACTACACAGCGAACACGGCCGAGGGGTAGGGCTGATGACATTG
GATTGGAATTAGACATCTTGGGTTACTGTACATGTACGTCTAATTCAACA
TAGAACGACACGCACACGCGATTCTTGTCGATAGTAGTGTGCGGACTACC
TAGATCGCCAGCAACTTCTCTCCCCCAAAAATCGACGCCGTGGCCACTGG
GGGAACGGCCTTGGAGCTTTCAAGGAAGCATGTGGTGACCGCAGAATGTG
CTGCTTCCATAAAAGGACGTAGTTAGTTTTGAAGGAGGAAAGTCCGCCGA
GATGGGATGTACCCAGGGTGAGTGTTCGATCGGGTCGACAGAGGCAAACG
CAAAAATCACTTATTACCACGGATGTGAAGACTCTAATTGGAGAGAGGTT
AGATTTTTATTCTGGACTTCTTTCTCCTCATCATCTACAAGTCGATGCAT
AGAGCTTCATGCATGCGAAGAAGTGCACCGGTAATAGAGCTTATACCCTC
ACGAGATAGCAGTGGACTTTGCGATGTAAATGTCTTGTGCCCCCCGCACC
CCTCGCTGCCTTCATTTTAATAAGGAAATTGTATTCAATGAGGGGCACAT
ATTGCACTCCGTTCTAAGGTCAACACGTGTAGCCGAGAAGTCACTGAAAG
TTGTCGCCAACAGGCGCGTTGCGTAGCACACAGCAACATATATTGTTTTG
TTTTTATTCGTTTTCGTGGAGAGGGGGATGGCGACCACTCTATAACTTAC
ACCTCCACCAACTGCATGTGTGACTCAACACCCCACACGTTCTGCATACC
ATGTTCCTTTCGTCTTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCCCTCCCTACCTCCCTCCCTCTTTCCCTCTCGCACGACG
CTTCTCAGACCCACAACATCTCCGACCGCAGTATCGATTCGGGGCTCATC
CCGCGGTATCTCCTGGACGGCAGCGTGCCGCCACCCGAAGGAAAACGGGC
CTCTAGCCTGGATTATTTCCCCCCGTGCGAACGGCCGAGTACCGTCCCCA
CCATCCGTATGGGGCACCAGTACAGGTGGAAAATCTGTCCAGGCATTCGC
TTGATCTCTGGAAATACTTTGTAGGACCAGAGACGAGAACTTCCTCCTCG
ATCTTCAACACAAAGTTGTCGACAAAGGGCGTATTTTCCTGTGACTAAGG
ATGGCTGAATGGTCGTCGCATGCGAGACGAGAGTATTGCTCGTCAACCAT
TGGTAGCTTCCAAACCAGCATTTCTCACTTTCCAGGCACCGTGCTTCCTT
TTTGTGCACCATGTACGTTGGGCTCAAACTGACCTGCGAGTGTCAACATA
TCCGGTGGTCTTTGAGTTCAAGATAGATGCTTGGTATGAGAGCCGGTACA
CTAACCTGGGGGTCGCTTCTTGACTCTTCCATAAGCCCGCTGTTGGTCCT
CCGTGGCCTTTGGAAGGAAGCCGCATTCCTCTTACTGGGCAACAACTCGC
TGGCATTGCTCACTATTTTCGTCCTGCTCACAGCCATGAAGACCTCAGGC
AGGACAACATAGGCTCTGCCTCCCCACCTGTCTGGGAATACGGGAACGGA
TGAACAAAATTATTCGAGAGAGATGCATCAGCGCGATTCCCATTCTAGTG
CATATATTTTACCCACCGACGCATCGCCACGGTCCCACCAACAGGCTGCT
CCGAGAAACCCCCACGAAGCGCTTGGACGCGTACAAAAGGGGCGCCGTGC
TCCGAGATGGACCTGTCCGCATCGTCCGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10774:506..3834-

>mRNA_H-canaliculatus_F_contig10774.728.1 ID=mRNA_H-canaliculatus_F_contig10774.728.1|Name=mRNA_H-canaliculatus_F_contig10774.728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10774:506..3834- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGCCACCAGCCTTCCACCACGACCGAATCCTCACGCCCGTGTTGC
AGAAAACTACGCGCCTCGTTTCTCTCCCGGTGAGCTTCCGCTGCTCCCGG
TGAATTGGATCCCTTCTTGGCGGTCTCCCCCTTCCAAAGTATGGGGAGAC
GTTGGAGTCAAGAATAGCAGTATCGGGGCAACTTCAGCTGCTGCTTCTTA
CGCGTCAGGTGCCGCCGCCGCAGCCGCAACTGCCCGACCTCAGACGACCG
GATGTACGCCACCAGCCTTCCACCACGACCGAATCCTCACGCCCGTGTTG
CAGAAAACTACGCGCCTCGTTTCTCTCCCGGTGAGCTTCCGCTGCTCCCG
GTGAATTGGATCCCTTCTTGGCGGTCTCCCCCTTCCAAAGTATGGGGAGA
CGTTGGAGTCAAGAATAGCAGTATCGGGGCAACTTCAGCTGCTGCTTCTT
ACGCGTCAGGTGCCGCCGCCGCAGCCGCAACTGCCCGACCTCAGACGACC
GGATCGATACGATTTGTGAGGGACTCATCTGCGAGAAAGATGTGGAGCTC
CCTTCGCGAAAATTGCACCGGGCGACTCCACTCGGTGCCGATCGATACGA
TTTGTGAGGGACTCATCTGCGAGAAAGATGTGGAGCTCCCTTCGCGAAAA
TTGCACCGGGCGACTCCACTCGGTGCCGACCCACAACATCTCCGACCGCA
GTATCGATTCGGGGCTCATCCCGCGGTATCTCCTGGACGGCAGCGTGCCG
CCACCCGAAGGAAAACGGGCCTCTAGCCTGGATTATTTCCCCCCGTGCGA
ACGGCCGAGTACCGTCCCCACCATCCGTATGGGGCACCAGTACAGACCCA
CAACATCTCCGACCGCAGTATCGATTCGGGGCTCATCCCGCGGTATCTCC
TGGACGGCAGCGTGCCGCCACCCGAAGGAAAACGGGCCTCTAGCCTGGAT
TATTTCCCCCCGTGCGAACGGCCGAGTACCGTCCCCACCATCCGTATGGG
GCACCAGTACAGGCTGCTCCGAGAAACCCCCACGAAGCGCTTGGACGCGT
ACAAAAGGGGCGCCGTGCTCCGAGATGGACCTGTCCGCATCGTCCGGGCT
GCTCCGAGAAACCCCCACGAAGCGCTTGGACGCGTACAAAAGGGGCGCCG
TGCTCCGAGATGGACCTGTCCGCATCGTCCGG
back to top