mRNA_H-canaliculatus_F_contig10771.725.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI) HSP 1 Score: 203 bits (517), Expect = 3.070e-54 Identity = 199/443 (44.92%), Postives = 228/443 (51.47%), Query Frame = 1 Query: 1 LATPQVGGRVAVSTTVNNTRQSVRMLQRRGSGLLR-------SDVGTSGTGSDRGRVKKFWSGESGGGGGSGSESGRIVDGSRRLGDSWGSRKSASVGTPAH-ARATSADPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSASGTGLPGISENNEDASRLLAPPDGSAGGNEGTPRREDSSYALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVAARVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKGRILGSDSSRSGTNTRSGGNAAIATSGXXXXXXXXXXXXXXXXXXRRAVAPRSGDGSAESSGGRARPRPSARRVWRNGPGDETDPEQ 1305 LA VGGR AVS T+ NTR+ R LQRRGSGLLR D SG GS+ K + +S G G ESG G+ R WG RKSAS+G P A ATSA +A+G+ L + A +G A + T S L XXXXXXXXXXXXX AARVGE L RLPLSKLKIVVVVWQIS+AFA+ITKVP+PPVYE FLSIIG+FSFDLGW++SAACLT+GIDFYDKLLIVTIGPVGLLLLLG TFYLGARPVRKGR++ +R+ +N S G+ + XXXXXXXXXX + R RPSARRVWRNGPGDE+D EQ Sbjct: 455 LAVYLVGGRGAVSNTLTNTREWARTLQRRGSGLLRWEGTTRRFDFRASGGGSEGHPTKGSGALKSVGEESDGGESG----GTGRFMGVWGRRKSASIGAPPPGATATSA--------AAATGPLSSVTDIKGGGSKPDSAGAVGAGFVPPARSPAAAAAWDAAAGSAL-------VHPTMRRADKEGEADASNNTVGSSSSGSGL--------------QSCAAPAVRGPGSGGKGACGXXXXXXXXXXXXXXXXAARVGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMMSAACLTAGIDFYDKLLIVTIGPVGLLLLLGFTFYLGARPVRKGRVI---DTRARSNASSSGSVSPHAPAASDSARGTXXXXXXXXXXXXXXXXXXXXXXXXXRARQGRARPSARRVWRNGPGDESDLEQ 861
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI) HSP 1 Score: 198 bits (503), Expect = 7.580e-52 Identity = 122/213 (57.28%), Postives = 139/213 (65.26%), Query Frame = 1 Query: 733 KAVAARVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKGRILGSDSSRSGTNTRSGGNAAIATSGXXXXXXXXXXXXXXXXXXRRAVAPRSGDGSAESSGG----------------------RARPRPSARRVWRNGPGDETDPEQ 1305 K AAR+GE L RLPLSKLKIVVVVWQIS+AFA++TKVP+PPVYE FLSIIG+FSFDLGW+ISAACLT+GIDFYDKLLIVTIGPVGLLLLLG TFYLGARPVR GR++ D S + S +A AT RA A S G+A ++ + R RPSARRVWRNGPGDE+D EQ Sbjct: 942 KTAAARIGEMLARLPLSKLKIVVVVWQISNAFAEVTKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGIDFYDKLLIVTIGPVGLLLLLGFTFYLGARPVRTGRVI--DMSFRNNTSTSVSSATAAT-------LAAYDSGISGSVRPRAGASDSARGTASTTAXXXXXXXXXXXXXXXXXXXXXXXQGRARPSARRVWRNGPGDESDIEQ 1145
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 193 bits (490), Expect = 4.390e-50 Identity = 125/212 (58.96%), Postives = 141/212 (66.51%), Query Frame = 1 Query: 742 AARVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKGRILGSDSSRSGTNTRSGGNAAIATSGXXXXXXXXXXXXXXXXXXRRAVAPRSGDGSA------------------------ESSGGRARPRPSARRVWRNGPGDETDPEQ 1305 AAR+GE L RLPLSKLKIV+VVWQIS+AFA+ITKVP+PPVYE FLSIIG+FSFDLGW+ISAACLT+G+DFYDKLLIVTIGPVGLLLLLG TFYLGARPVRKGRI+ D S T + S +A +AT XXXXX G+ + GRARP SARRVWRNGPGDE+D EQ Sbjct: 1404 AARIGEMLARLPLSKLKIVIVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGVDFYDKLLIVTIGPVGLLLLLGFTFYLGARPVRKGRIV--DMSSRSTASDSVSSATVATLEAYDSGSSRSVRPQXXXXXXXXXXXXXARGTXXXXXXXXXXXXXXXXXXXXXXXXXRARQGRARP--SARRVWRNGPGDESDIEQ 1611
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE) HSP 1 Score: 150 bits (380), Expect = 1.150e-35 Identity = 78/122 (63.93%), Postives = 97/122 (79.51%), Query Frame = 1 Query: 736 AVAARVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKGRILGSDSSRSGTNTRSGG 1101 A RV L LPLSKLKIV+VVWQI+SAFADITK P+PP+YE FLSIIG+FSFDLGWI+SAACLT+GIDFYDKLLIVTIGP+ L LG+TF++G+RP ++ + + ++ G + SGG Sbjct: 1247 APPTRVANLLAALPLSKLKIVIVVWQITSAFADITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLLIVTIGPLVPLCFLGITFFVGSRPAKETNMSPNATTADGGASGSGG 1368
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 145 bits (365), Expect = 1.040e-33 Identity = 203/475 (42.74%), Postives = 228/475 (48.00%), Query Frame = 1 Query: 1 LATPQVGGRVAVSTTVNNTRQSVRMLQRRGSGLLRSDVGT-------SGTGSDRGRVKKFWS-----GESGGGGGSGSESGRIVDGSRRLGDSWGSRKSASVGTPAHARATSADPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSASGTGLPGISENNEDASRLLAPPDGSAGGNEGTPRREDSSYALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAV----------------------------AARVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKGRILGSDSSRSGTNTRSGGNAAIATSGXXXXXXXXXXXXXXXXXXRRAVAPRSGDGSAESSGGRARPRPSARRVWRNGPGDETDPEQ 1305 LA VGGR AVSTT+ NTR+SVRMLQRRGSGLLRS+ T SG GS G K S GE GG SG GS R +WG RKSAS+G P T++ SA+G+G P S N++ A A G+ G G S A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AV AAR+GE L RLPLSKLKIVVVVWQIS+AFA+ITKVP+PPVYE FLSIIG+FSFDLGW+ISAACLT+GIDFYDKLL G +SR+ A+A + A A R+ G A RPSARRVWRNGPGDE+D EQ Sbjct: 1071 LAVYLVGGRGAVSTTMTNTRESVRMLQRRGSGLLRSEGTTRRFHFSASGGGSSGGHPTKGSSALKSVGEESDGGESG--------GSGRFLGAWGRRKSASIGAPPPGAITTS----------------------------------------------------SAAGSG-PSSSVNDKGAGSK-ADSAGTVGA--GFVPLARSRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQPSAAPAVRGPXXXXXXXXXXXXXXXXXXXXXXXXXAARIGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGIDFYDKLL-----------------------------RGKGASRT----------AMAAA---------------------AAAERARQGRA---------RPSARRVWRNGPGDESDLEQ 1412
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.640e-27 Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 1 Query: 748 RVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRK 1044 RV LT LPLSKLKIV+ DITK P+PP+YE FLSIIG+FSFDLGWI+SAACLT+GIDFYDKLL+VTIGP+ L LG+TF++G+RP +K Sbjct: 1028 RVANLLTALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLLMVTIGPLLPLCFLGITFFVGSRPAKK 1116
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI) HSP 1 Score: 125 bits (313), Expect = 5.300e-27 Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 1 Query: 748 RVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRK 1044 RV L LPLSKLKIV+ DITK P+PP+YE FLSIIG+FSFDLGWI+SAACLT+GIDFYDKLLIVTIGP+ L LG+TF++G+RP ++ Sbjct: 1068 RVANLLAALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLLIVTIGPLVPLFFLGITFFVGSRPAKE 1156
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE) HSP 1 Score: 106 bits (264), Expect = 7.160e-21 Identity = 84/191 (43.98%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 742 AARVGEALTRLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKGRILGSDSSRSGTNTRSGGNAAIATSGXXXXXXXXXXXXXXXXXXRRAVAPRSGDGSAESSGGRARP---RPSARRVWRNGPGDETDPEQ 1305 A R+GE L RLPLSK AFA+ITKVP+PPVYE FLSIIG FSF LGW+ISAACLT+G DFYDKLL+ + L + G + R SD +R T+T AT+ RR P RAR RPSARRVWR+GPGDE+D EQ Sbjct: 193 AVRIGEMLARLPLSKDCR-------RCAFAEITKVPFPPVYEKFLSIIGTFSFGLGWVISAACLTAGNDFYDKLLVSSATAATL-----AAYDSGISGSVRTRAGASDPARGTTST-------TATT-------------------RRGKGPSRTAXXXXXXXERARQGRARPSARRVWRSGPGDESDIEQ 345
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.040e-15 Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1 Query: 769 RLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGAR 1032 RLP+ KLKI+VVVWQI S F IT V +PP Y FLS I + SFDLG ++SA+C+ +DFY LL+ T+GP+G+ ++L +T+++ R Sbjct: 1105 RLPMDKLKILVVVWQILSVFPSITAVDFPPAYARFLSWIDMLSFDLGHVLSASCVFPVMDFYQSLLLTTLGPLGVAMVLVLTYWIAKR 1192
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 5.760e-14 Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1 Query: 769 RLPLSKLKIVVVVWQISSAFADITKVPYPPVYESFLSIIGVFSFDLGWIISAACLTSGIDFYDKLLIVTIGPVGLLLLLGVTFYLGARPVRKG 1047 RLP+ K+KI+VVVWQI S F IT V +PP Y FLS I + SFDL ++SA+C+ +DFY +LL+ T+ P+G+ ++L +T+++ R G Sbjct: 1112 RLPMDKIKILVVVWQILSVFPSITAVDFPPAYARFLSWINMLSFDLEHVLSASCVFPVMDFYQRLLVTTLVPLGVAMVLVLTYWMAKRRAGSG 1204 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10771.725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10771.725.1 >prot_H-canaliculatus_F_contig10771.725.1 ID=prot_H-canaliculatus_F_contig10771.725.1|Name=mRNA_H-canaliculatus_F_contig10771.725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=435bp LATPQVGGRVAVSTTVNNTRQSVRMLQRRGSGLLRSDVGTSGTGSDRGRVback to top mRNA from alignment at H-canaliculatus_F_contig10771:435..3773+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10771.725.1 ID=mRNA_H-canaliculatus_F_contig10771.725.1|Name=mRNA_H-canaliculatus_F_contig10771.725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3339bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10771:435..3773+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10771:435..3773+ >mRNA_H-canaliculatus_F_contig10771.725.1 ID=mRNA_H-canaliculatus_F_contig10771.725.1|Name=mRNA_H-canaliculatus_F_contig10771.725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2610bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10771:435..3773+ (Hapterophycus canaliculatus Oshoro5f female)back to top |