mRNA_H-canaliculatus_F_contig10759.720.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10759.720.1
Unique NamemRNA_H-canaliculatus_F_contig10759.720.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 9.340e-57
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 APAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMSNK 291
            APAWV P KLVLDP LLYFE AFVARI+LSWYPKLDLNSAPQNLVAWPTEPIL+PTRA+IPPAFGVDISPIVWVMICSL+HEILLGQQGILNLMSNK
Sbjct:  133 APAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.040e-56
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 APAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMSNK 291
            APAWV P KLVLDP LL+FE AFVARI+LSWYPKLDLNSAPQNLVAWPTEPILRPTRA+IPPAFGVDISPIVWVMICSL+HEILLGQQGILNLMSNK
Sbjct:  125 APAWVGPTKLVLDPTLLFFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 221
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.650e-43
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    4 PAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMSNK 291
            P WV P +  LDP LLY E AF+ RI+LSWYP+ DLN APQNLVAWPTEPIL+PTRAV+PPAFGVDISPIVWVMI S + EIL GQQGI N++S +
Sbjct:   94 PGWVGPTRAALDPFLLYMEFAFLCRIVLSWYPQTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREILFGQQGIFNMLSQQ 189
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A7S3UWL9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL9_HETAK)

HSP 1 Score: 127 bits (320), Expect = 2.210e-35
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    4 PAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMS 285
            PAWV P   VL P L  F +A +ARI+LSWYP +DLN AP NLVAWPTEP+L  TR V+PPAFGVDISPIVW+M+ S ++E+ LG QGIL L++
Sbjct:   81 PAWVEPTSTVLGPFLAVFSLAMLARIVLSWYPSIDLNEAPFNLVAWPTEPLLAFTRGVVPPAFGVDISPIVWLMVASFVNEVALGPQGILTLLA 174
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A7S2V560_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V560_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.470e-35
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 APAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMSNK 291
            AP WV P KL+LDP+L    +A +AR++LSWYP + L+ AP + +  PTEP+L+ TR V+PPAFGVD+SPIVW+MI S  HEILLGQQG+L ++ NK
Sbjct:   80 APVWVAPTKLILDPLLNIVSLAMLARVVLSWYPSISLDKAPFSYLKAPTEPVLQVTREVVPPAFGVDVSPIVWIMISSFFHEILLGQQGLLTILQNK 176
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A7S1FZ37_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ37_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.190e-32
Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   10 WVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNL 279
            WV+P + VLDP+L     A + RI++SWYP  +L++ P +L  WPTEP+LRPTRAV+PPAFGVDISP+VW+ I + LHEILLGQQG+L L
Sbjct:   74 WVVPLQSVLDPLLNLLSFAMLCRIVISWYPNTNLSTLPYSLAVWPTEPLLRPTRAVVPPAFGVDISPMVWLGIFTFLHEILLGQQGLLTL 163
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: W7TNB9_9STRA (Integral membrane protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNB9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.230e-32
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 APAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMSNK 291
            A +WV PAK V++P+L    VAF+ RI+LSWYP++DLN  P NL+AWPTEP L  TR V+PPAFGVDISPI+W    + L EIL+  QGIL L+  K
Sbjct:   74 ASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A7S2GHS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHS6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.930e-32
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    7 AWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLM 282
            AW  P + + DP+LL  +   + R+I+SWYP+++LN  P N++ WPTEP LRPTR VIPPAFGVDISPIVW+ I S   EI  GQQG+ N++
Sbjct:   79 AWAGPTRAICDPLLLVGQTVMLFRVIISWYPEINLNKLPYNIITWPTEPFLRPTRKVIPPAFGVDISPIVWIAILSFFREIFFGQQGVFNML 170
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.110e-31
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    7 AWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNL 279
            AWV P K VLDP L     A + R+++SWYP+ ++N  P N+V WPTEP+LR TR V+PPAFGVDISPIVW+ + + LHEI LGQQG+L L
Sbjct:   78 AWVEPLKNVLDPSLNLLSFAMLCRVVISWYPETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEIFLGQQGLLTL 168
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BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Match: UPI0016866C19 (YggT family protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016866C19)

HSP 1 Score: 113 bits (282), Expect = 1.110e-30
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   22 AKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTEPILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMS 285
            A  VL P L  F + F+ RI+LSWYP++DLN  P NL+AWPTEP LRP R ++PP  GVDISPIVW+ I SL+ E+LLGQQG+L +MS
Sbjct:    6 ATWVLGPFLGLFILLFILRIVLSWYPQIDLNKLPYNLIAWPTEPFLRPMRKLVPPLGGVDISPIVWIGIFSLVRELLLGQQGLLTMMS 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10759.720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHQ4_ECTSI9.340e-5791.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E9_9PHAE1.040e-5691.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA21_9STRA2.650e-4371.88YGGT family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S3UWL9_HETAK2.210e-3563.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V560_9STRA5.470e-3558.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1FZ37_9STRA1.190e-3261.11Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
W7TNB9_9STRA1.230e-3258.76Integral membrane protein n=2 Tax=Nannochloropsis ... [more]
A0A7S2GHS6_9STRA9.930e-3255.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2PCB6_9STRA1.110e-3159.34Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
UPI0016866C191.110e-3061.36YggT family protein n=1 Tax=Microcoleus sp. FACHB-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10759contigH-canaliculatus_F_contig10759:227..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D8LHQ4
Preferred nameCCB3
KEGG koko:K02221
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010190,GO:0016020,GO:0016043,GO:0017004,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
EggNOG free text desc.YGGT family
EggNOG OGs2S21M@2759,COG0762@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUncharacterised protein family Ycf19
Ec32 orthologEc-20_002670.1
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928739.959032-CDS-H-canaliculatus_F_contig10759:226..4181622928739.959032-CDS-H-canaliculatus_F_contig10759:226..418Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10759 227..418 -
1696845545.9280725-CDS-H-canaliculatus_F_contig10759:226..4181696845545.9280725-CDS-H-canaliculatus_F_contig10759:226..418Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10759 227..418 -
1622928739.9731364-CDS-H-canaliculatus_F_contig10759:1119..12211622928739.9731364-CDS-H-canaliculatus_F_contig10759:1119..1221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10759 1120..1221 -
1696845545.9434779-CDS-H-canaliculatus_F_contig10759:1119..12211696845545.9434779-CDS-H-canaliculatus_F_contig10759:1119..1221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10759 1120..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10759.720.1prot_H-canaliculatus_F_contig10759.720.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10759 227..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10759.720.1

>prot_H-canaliculatus_F_contig10759.720.1 ID=prot_H-canaliculatus_F_contig10759.720.1|Name=mRNA_H-canaliculatus_F_contig10759.720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
APAWVLPAKLVLDPVLLYFEVAFVARIILSWYPKLDLNSAPQNLVAWPTE
PILRPTRAVIPPAFGVDISPIVWVMICSLLHEILLGQQGILNLMSNK*
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mRNA from alignment at H-canaliculatus_F_contig10759:227..1221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10759.720.1 ID=mRNA_H-canaliculatus_F_contig10759.720.1|Name=mRNA_H-canaliculatus_F_contig10759.720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=995bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10759:227..1221- (Hapterophycus canaliculatus Oshoro5f female)
GCGCCGGCGTGGGTGTTGCCCGCGAAACTCGTGCTGGACCCGGTCCTCCT
CTACTTCGAGGTGGCCTTCGTCGCTCGCATCATCCTGTCGTGGTACCCCA
AGGTGAGACGCGCATCGCGGCTATCGTCACCGCTACCGTCGCCATCGCTG
CAGATATGGCTTCCAGAGATGGCTTCTAGAGACGGGCAGGCGGTGGCCCC
GCAGCGATGAATGTTCAGCTCGGCATCTAGTGTCCTAGCCCTCTTGCGGG
TGAGAGATCATGGCAGTGAACGCGGGTGGCGCGCGTTTGTGCGGGCTGGG
GCCAAACTTGTACTTGGTGATCCGCCATTCTTTTCGCGAATGCATGGGTT
GAGTCGAGTGGTGACATGTGGGAGCGGCATCTTCGGACCGGACGAGATTG
GTGCACCACTCACTCGCGCGCTCGCCCAACGCGAACGCTTGCACGGTGCG
TGCGCGGAGGCAATAAACAGAAGGACCACGGGTCAGTGCAACAGAATAAA
CTTGCCTGCCTGCCTCTTCCGGTTGTTTCGACACGCTTGTGTTTCACTGG
TTGCAGGCAGGGAGGGCATAGACCTGCCGGCCTATTTGAAAACCCTTGCG
CCTCAGCGGGGCGACAATCTGTGATGCGTGTTAGACCTTTTCCCAGCATC
GAACACGCAATCAGCTCACCGCGCCCGTGCGCTTGTGTGCCTAAAAGTCT
CGTCCATGCTCCCTCCAAACGTACCACGAAACGCGTCCAGTGACTCCCCG
CCCGCCCCACCCCCGGCGCCTTTCCCCATTGAACGACCGCCGCGGGTTTC
CAGCTGGACCTCAACAGCGCGCCTCAAAACCTAGTGGCGTGGCCGACGGA
GCCCATCCTGCGGCCGACAAGAGCCGTCATCCCTCCCGCTTTCGGCGTGG
ACATCAGCCCCATCGTGTGGGTCATGATCTGCTCGCTCCTTCACGAGATC
CTGCTAGGGCAGCAGGGAATCCTGAACCTCATGTCGAACAAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10759:227..1221-

>mRNA_H-canaliculatus_F_contig10759.720.1 ID=mRNA_H-canaliculatus_F_contig10759.720.1|Name=mRNA_H-canaliculatus_F_contig10759.720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10759:227..1221- (Hapterophycus canaliculatus Oshoro5f female)
GCGCCGGCGTGGGTGTTGCCCGCGAAACTCGTGCTGGACCCGGTCCTCCT
CTACTTCGAGGTGGCCTTCGTCGCTCGCATCATCCTGTCGTGGTACCCCA
AGGCGCCGGCGTGGGTGTTGCCCGCGAAACTCGTGCTGGACCCGGTCCTC
CTCTACTTCGAGGTGGCCTTCGTCGCTCGCATCATCCTGTCGTGGTACCC
CAAGCTGGACCTCAACAGCGCGCCTCAAAACCTAGTGGCGTGGCCGACGG
AGCCCATCCTGCGGCCGACAAGAGCCGTCATCCCTCCCGCTTTCGGCGTG
GACATCAGCCCCATCGTGTGGGTCATGATCTGCTCGCTCCTTCACGAGAT
CCTGCTAGGGCAGCAGGGAATCCTGAACCTCATGTCGAACAAATGACTGG
ACCTCAACAGCGCGCCTCAAAACCTAGTGGCGTGGCCGACGGAGCCCATC
CTGCGGCCGACAAGAGCCGTCATCCCTCCCGCTTTCGGCGTGGACATCAG
CCCCATCGTGTGGGTCATGATCTGCTCGCTCCTTCACGAGATCCTGCTAG
GGCAGCAGGGAATCCTGAACCTCATGTCGAACAAATGA
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