mRNA_H-canaliculatus_F_contig10755.718.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10755.718.1
Unique NamemRNA_H-canaliculatus_F_contig10755.718.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10755.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10755contigH-canaliculatus_F_contig10755:1341..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size692
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10755.718.1prot_H-canaliculatus_F_contig10755.718.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10755 1557..2030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928739.750814-UTR-H-canaliculatus_F_contig10755:1340..15561622928739.750814-UTR-H-canaliculatus_F_contig10755:1340..1556Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10755 1341..1556 +
1696845545.8658063-UTR-H-canaliculatus_F_contig10755:1340..15561696845545.8658063-UTR-H-canaliculatus_F_contig10755:1340..1556Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10755 1341..1556 +
1622928739.857454-UTR-H-canaliculatus_F_contig10755:2030..20321622928739.857454-UTR-H-canaliculatus_F_contig10755:2030..2032Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10755 2031..2032 +
1696845545.8894725-UTR-H-canaliculatus_F_contig10755:2030..20321696845545.8894725-UTR-H-canaliculatus_F_contig10755:2030..2032Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10755 2031..2032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928739.8440678-CDS-H-canaliculatus_F_contig10755:1556..20301622928739.8440678-CDS-H-canaliculatus_F_contig10755:1556..2030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10755 1557..2030 +
1696845545.8769367-CDS-H-canaliculatus_F_contig10755:1556..20301696845545.8769367-CDS-H-canaliculatus_F_contig10755:1556..2030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10755 1557..2030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10755.718.1

>prot_H-canaliculatus_F_contig10755.718.1 ID=prot_H-canaliculatus_F_contig10755.718.1|Name=mRNA_H-canaliculatus_F_contig10755.718.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
MPALCGEFDGPAKKPPRLCTSSTPYLEREFNTLDRERWKKREVGKDLSTV
LSSLVPLHTPVPTTPTTAFWHTLVHAAGVMLLSGPTVPTSPEPSVSARMR
DVSYRPSNAALALEMIRVHRVICGRPTQPLNRKSLAHGRSRGKIRGTARD
IVRVVNK*
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mRNA from alignment at H-canaliculatus_F_contig10755:1341..2032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10755.718.1 ID=mRNA_H-canaliculatus_F_contig10755.718.1|Name=mRNA_H-canaliculatus_F_contig10755.718.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10755:1341..2032+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAGGCGTGATTTTTGCATCGGGAATGGTTTGAAAGGAGGGTCCTCGTG
GCCGTTGAGACGTTATGGAGGGCTGGAGCTCTGGTTGGTAGGTAGGTTGT
GAGGTTCGGTGGCAATGTGGCGTTAACTTTTAGCCTGCCTTGACTTATTC
GTTGTCAATTTCTAATCGTGCAGGCGTAGCTTGCTGTTGGGGATAGGAAA
GAGTAAGCGAGGAATCATGCCCGCGTTGTGTGGTGAATTCGATGGCCCTG
CGAAGAAACCGCCTCGACTGTGTACCTCGTCCACGCCGTATCTTGAACGA
GAATTCAATACCCTGGATAGAGAGAGGTGGAAAAAGAGAGAAGTGGGTAA
AGACTTATCGACTGTGCTCAGCTCTTTGGTTCCTCTGCACACCCCTGTGC
CCACCACGCCAACCACGGCCTTTTGGCACACCTTGGTGCACGCAGCCGGG
GTCATGCTTTTGTCTGGTCCAACTGTGCCCACGTCGCCCGAACCATCGGT
CTCGGCGAGGATGAGGGACGTCTCCTATCGTCCGTCGAACGCAGCACTGG
CGTTGGAAATGATACGCGTTCATCGCGTAATATGTGGCCGTCCAACTCAG
CCCCTGAACCGAAAATCGCTCGCACACGGACGATCCCGCGGAAAGATTCG
AGGAACGGCGCGGGATATTGTTCGCGTGGTAAATAAATGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10755:1341..2032+

>mRNA_H-canaliculatus_F_contig10755.718.1 ID=mRNA_H-canaliculatus_F_contig10755.718.1|Name=mRNA_H-canaliculatus_F_contig10755.718.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10755:1341..2032+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCGCGTTGTGTGGTGAATTCGATGGCCCTGCGAAGAAACCGCCTCG
ACTGTGTACCTCGTCCACGCCGTATCTTGAACGAGAATTCAATACCCTGG
ATAGAGAGAGGTGGAAAAAGAGAGAAGTGGGTAAAGACTTATCGACTGTG
CTCAGCTCTTTGGTTCCTCTGCACACCCCTGTGCCCACCACGCCAACCAC
GGCCTTTTGGCACACCTTGGTGCACGCAGCCGGGGTCATGCTTTTGTCTG
GTCCAACTGTGCCCACGTCGCCCGAACCATCGGTCTCGGCGAGGATGAGG
GACGTCTCCTATCGTCCGTCGAACGCAGCACTGGCGTTGGAAATGATACG
CGTTCATCGCGTAATATGTGGCCGTCCAACTCAGCCCCTGAACCGAAAAT
CGCTCGCACACGGACGATCCCGCGGAAAGATTCGAGGAACGGCGCGGGAT
ATTGTTCGCGTGGTAAATAAATGAATGCCCGCGTTGTGTGGTGAATTCGA
TGGCCCTGCGAAGAAACCGCCTCGACTGTGTACCTCGTCCACGCCGTATC
TTGAACGAGAATTCAATACCCTGGATAGAGAGAGGTGGAAAAAGAGAGAA
GTGGGTAAAGACTTATCGACTGTGCTCAGCTCTTTGGTTCCTCTGCACAC
CCCTGTGCCCACCACGCCAACCACGGCCTTTTGGCACACCTTGGTGCACG
CAGCCGGGGTCATGCTTTTGTCTGGTCCAACTGTGCCCACGTCGCCCGAA
CCATCGGTCTCGGCGAGGATGAGGGACGTCTCCTATCGTCCGTCGAACGC
AGCACTGGCGTTGGAAATGATACGCGTTCATCGCGTAATATGTGGCCGTC
CAACTCAGCCCCTGAACCGAAAATCGCTCGCACACGGACGATCCCGCGGA
AAGATTCGAGGAACGGCGCGGGATATTGTTCGCGTGGTAAATAAATGA
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