mRNA_H-canaliculatus_F_contig10746.709.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10746.709.1
Unique NamemRNA_H-canaliculatus_F_contig10746.709.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: D7FP85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP85_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.560e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            MILVANGGLGSAYDELELNRGICEKYGIKVRGV+LNK
Sbjct:   84 MILVANGGLGSAYDELELNRGICEKYGIKVRGVVLNK 120
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A7S1UCT6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCT6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.370e-10
Identity = 27/37 (72.97%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            MIL+ANGGLGSA+DELELNR +C++YG+K+RGV++NK
Sbjct:  150 MILIANGGLGSAFDELELNRCMCKEYGVKIRGVVINK 186
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A836CAU9_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.370e-10
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            MILVANGGLGSA+DELELNR +C++YG+K+ GV+LNK
Sbjct:  144 MILVANGGLGSAFDELELNRCMCKEYGVKISGVILNK 180
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A024TU32_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TU32_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-9
Identity = 24/37 (64.86%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            M+L+ANGG+GSA+D+L LNR +C++YG++VRGV+LNK
Sbjct:  147 MVLIANGGIGSAFDDLSLNRALCQQYGVRVRGVILNK 183
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A7S2SU09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU09_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.570e-9
Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            MILVANGGLGSA+DELELN  +C++YG+ +RG++LNK
Sbjct:  161 MILVANGGLGSAFDELELNHTMCKEYGVNIRGIILNK 197
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A7R9U109_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U109_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.570e-9
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            MIL+ANGGLGSA+DELELNR +C++YG+K+ GV++NK
Sbjct:  161 MILIANGGLGSAFDELELNRCMCKEYGVKISGVVINK 197
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A2D4CEQ2_PYTIN (DRTGG domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEQ2_PYTIN)

HSP 1 Score: 60.5 bits (145), Expect = 3.980e-9
Identity = 25/37 (67.57%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            MIL+ANGG+GSA+D+L LN  +C++YG+KVRGV+LNK
Sbjct:  146 MILIANGGIGSAFDDLALNHSMCKEYGVKVRGVILNK 182
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A485KB28_9STRA (Aste57867_2095 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KB28_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.010e-9
Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            M+L+ANGG+GSA+D+L LNR +C+ YG++VRGV+LNK
Sbjct:  158 MLLIANGGIGSAFDDLSLNRAMCKSYGVRVRGVILNK 194
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: K3W676_GLOUD (DRTGG domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W676_GLOUD)

HSP 1 Score: 59.7 bits (143), Expect = 7.470e-9
Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            M+L+ANGG+GSA+D+L LN  +C++YG+KVRGV+LNK
Sbjct:  149 MVLIANGGIGSAFDDLALNYALCKQYGVKVRGVILNK 185
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BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Match: A0A6G0WNF0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNF0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.020e-8
Identity = 22/37 (59.46%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNK 111
            M+L+ANGG+GS +D+L LNR +C++YG+++RGV+LNK
Sbjct:  144 MVLIANGGIGSTFDDLSLNRAMCKEYGVRIRGVILNK 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10746.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP85_ECTSI2.560e-1597.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UCT6_9STRA2.370e-1072.97Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A836CAU9_9STRA4.370e-1075.68AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024TU32_9STRA1.130e-964.86Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A7S2SU09_9STRA1.570e-970.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U109_9STRA1.570e-970.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2D4CEQ2_PYTIN3.980e-967.57DRTGG domain-containing protein n=2 Tax=Pythium in... [more]
A0A485KB28_9STRA4.010e-964.86Aste57867_2095 protein n=1 Tax=Aphanomyces stellat... [more]
K3W676_GLOUD7.470e-964.86DRTGG domain-containing protein n=2 Tax=Pythiaceae... [more]
A0A6G0WNF0_9STRA1.020e-859.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10746contigH-canaliculatus_F_contig10746:1421..1757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog2880.D7FP85
EggNOG free text desc.AAA domain
EggNOG OGs2RN67@2759,COG0857@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928738.0257828-CDS-H-canaliculatus_F_contig10746:1420..15311622928738.0257828-CDS-H-canaliculatus_F_contig10746:1420..1531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10746 1421..1531 +
1696845545.264537-CDS-H-canaliculatus_F_contig10746:1420..15311696845545.264537-CDS-H-canaliculatus_F_contig10746:1420..1531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10746 1421..1531 +
1622928738.0448554-CDS-H-canaliculatus_F_contig10746:1673..17571622928738.0448554-CDS-H-canaliculatus_F_contig10746:1673..1757Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10746 1674..1757 +
1696845545.2833905-CDS-H-canaliculatus_F_contig10746:1673..17571696845545.2833905-CDS-H-canaliculatus_F_contig10746:1673..1757Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10746 1674..1757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10746.709.1prot_H-canaliculatus_F_contig10746.709.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10746 1421..1757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10746.709.1

>prot_H-canaliculatus_F_contig10746.709.1 ID=prot_H-canaliculatus_F_contig10746.709.1|Name=mRNA_H-canaliculatus_F_contig10746.709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
MILVANGGLGSAYDELELNRGICEKYGIKVRGVLLNKFYRRVVRGLGFNW
RIRRGVVFSKKKGDT
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mRNA from alignment at H-canaliculatus_F_contig10746:1421..1757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10746.709.1 ID=mRNA_H-canaliculatus_F_contig10746.709.1|Name=mRNA_H-canaliculatus_F_contig10746.709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=337bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10746:1421..1757+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATATTGGTCGCAAACGGTGGGCTGGGGTCCGCTTACGATGAACTGGA
GCTGAACCGAGGGATCTGCGAGAAGTACGGCATCAAGGTTCGAGGTGTCT
TGCTCAACAAGGTGAGATCCGTCAGTGTTTGCCCGGACTGCACACTCCTC
CCTGCGTCTTTCGTCTATTGACACAAATCAACGGCCGTAGTGATGACAGG
CACACACGCCTCTTTACCTTATTCTGCCGTTTGACGGAGCGCGTTTTCAC
CAGTTCTACAGAAGGGTCGTTCGCGGGTTAGGGTTCAACTGGCGCATAAG
GCGAGGAGTCGTTTTTTCGAAAAAGAAAGGGGATACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10746:1421..1757+

>mRNA_H-canaliculatus_F_contig10746.709.1 ID=mRNA_H-canaliculatus_F_contig10746.709.1|Name=mRNA_H-canaliculatus_F_contig10746.709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10746:1421..1757+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATATTGGTCGCAAACGGTGGGCTGGGGTCCGCTTACGATGAACTGGA
GCTGAACCGAGGGATCTGCGAGAAGTACGGCATCAAGGTTCGAGGTGTCT
TGCTCAACAAGATGATATTGGTCGCAAACGGTGGGCTGGGGTCCGCTTAC
GATGAACTGGAGCTGAACCGAGGGATCTGCGAGAAGTACGGCATCAAGGT
TCGAGGTGTCTTGCTCAACAAGTTCTACAGAAGGGTCGTTCGCGGGTTAG
GGTTCAACTGGCGCATAAGGCGAGGAGTCGTTTTTTCGAAAAAGAAAGGG
GATACATTCTACAGAAGGGTCGTTCGCGGGTTAGGGTTCAACTGGCGCAT
AAGGCGAGGAGTCGTTTTTTCGAAAAAGAAAGGGGATACA
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