mRNA_H-canaliculatus_F_contig10735.705.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10735.705.1
Unique NamemRNA_H-canaliculatus_F_contig10735.705.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10735.705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10735contigH-canaliculatus_F_contig10735:1604..1907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002660.1
Exons1
Model size304
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928737.0515137-UTR-H-canaliculatus_F_contig10735:1603..16041622928737.0515137-UTR-H-canaliculatus_F_contig10735:1603..1604Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10735 1604..1604 +
1696845544.8577106-UTR-H-canaliculatus_F_contig10735:1603..16041696845544.8577106-UTR-H-canaliculatus_F_contig10735:1603..1604Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10735 1604..1604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928737.111428-CDS-H-canaliculatus_F_contig10735:1604..19071622928737.111428-CDS-H-canaliculatus_F_contig10735:1604..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10735 1605..1907 +
1696845544.8684192-CDS-H-canaliculatus_F_contig10735:1604..19071696845544.8684192-CDS-H-canaliculatus_F_contig10735:1604..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10735 1605..1907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10735.705.1prot_H-canaliculatus_F_contig10735.705.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10735 1605..1907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10735.705.1

>prot_H-canaliculatus_F_contig10735.705.1 ID=prot_H-canaliculatus_F_contig10735.705.1|Name=mRNA_H-canaliculatus_F_contig10735.705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MAAKADIATNLDVFHAVYRPVVEVGRGRGRGRGCCRSERASRTPNSGFTK
HTCVACLSKFVRPRDACEPLGNPRKGVGQGAPRGESTPRSAARFLSVCCG
*
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mRNA from alignment at H-canaliculatus_F_contig10735:1604..1907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10735.705.1 ID=mRNA_H-canaliculatus_F_contig10735.705.1|Name=mRNA_H-canaliculatus_F_contig10735.705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=304bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10735:1604..1907+ (Hapterophycus canaliculatus Oshoro5f female)
GATGGCGGCGAAGGCCGACATCGCCACGAACCTCGACGTCTTCCATGCGG
TGTACCGCCCGGTGGTTGAGGTAGGTCGAGGTCGAGGTCGAGGTCGGGGT
TGTTGCCGCAGCGAAAGGGCGTCGCGAACGCCCAACAGCGGCTTTACCAA
GCACACATGTGTTGCCTGTCTGTCGAAGTTTGTCCGCCCGCGCGACGCGT
GTGAACCTCTCGGCAACCCGCGCAAGGGGGTTGGGCAAGGTGCCCCTCGG
GGTGAGTCAACGCCGCGGAGTGCTGCGCGTTTTCTGTCCGTGTGTTGTGG
CTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10735:1604..1907+

>mRNA_H-canaliculatus_F_contig10735.705.1 ID=mRNA_H-canaliculatus_F_contig10735.705.1|Name=mRNA_H-canaliculatus_F_contig10735.705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10735:1604..1907+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCGAAGGCCGACATCGCCACGAACCTCGACGTCTTCCATGCGGT
GTACCGCCCGGTGGTTGAGGTAGGTCGAGGTCGAGGTCGAGGTCGGGGTT
GTTGCCGCAGCGAAAGGGCGTCGCGAACGCCCAACAGCGGCTTTACCAAG
CACACATGTGTTGCCTGTCTGTCGAAGTTTGTCCGCCCGCGCGACGCGTG
TGAACCTCTCGGCAACCCGCGCAAGGGGGTTGGGCAAGGTGCCCCTCGGG
GTGAGTCAACGCCGCGGAGTGCTGCGCGTTTTCTGTCCGTGTGTTGTGGC
TAGATGGCGGCGAAGGCCGACATCGCCACGAACCTCGACGTCTTCCATGC
GGTGTACCGCCCGGTGGTTGAGGTAGGTCGAGGTCGAGGTCGAGGTCGGG
GTTGTTGCCGCAGCGAAAGGGCGTCGCGAACGCCCAACAGCGGCTTTACC
AAGCACACATGTGTTGCCTGTCTGTCGAAGTTTGTCCGCCCGCGCGACGC
GTGTGAACCTCTCGGCAACCCGCGCAAGGGGGTTGGGCAAGGTGCCCCTC
GGGGTGAGTCAACGCCGCGGAGTGCTGCGCGTTTTCTGTCCGTGTGTTGT
GGCTAG
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