mRNA_H-canaliculatus_F_contig10730.703.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10730.703.1
Unique NamemRNA_H-canaliculatus_F_contig10730.703.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10730.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10730contigH-canaliculatus_F_contig10730:390..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.9369912-CDS-H-canaliculatus_F_contig10730:389..8481622928736.9369912-CDS-H-canaliculatus_F_contig10730:389..848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10730 390..848 +
1696845544.8334007-CDS-H-canaliculatus_F_contig10730:389..8481696845544.8334007-CDS-H-canaliculatus_F_contig10730:389..848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10730 390..848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.952747-UTR-H-canaliculatus_F_contig10730:848..8611622928736.952747-UTR-H-canaliculatus_F_contig10730:848..861Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10730 849..861 +
1696845544.8414495-UTR-H-canaliculatus_F_contig10730:848..8611696845544.8414495-UTR-H-canaliculatus_F_contig10730:848..861Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10730 849..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10730.703.1prot_H-canaliculatus_F_contig10730.703.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10730 390..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10730.703.1

>prot_H-canaliculatus_F_contig10730.703.1 ID=prot_H-canaliculatus_F_contig10730.703.1|Name=mRNA_H-canaliculatus_F_contig10730.703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
LQRTGQQRRAVTTDGYWAWCRGCIAGLKLFDSNNGVFFRGGQAGARRYPI
VLSKVSTAWLLAKLTVFCFESCRKERSGVLSSVSFFMLVFERTWPQRRAP
LWVLSLMLSVFTPPLPVCTVKALTSSVTSRVLVPSSQELKLAERRLGLGL
LA*
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mRNA from alignment at H-canaliculatus_F_contig10730:390..861+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10730.703.1 ID=mRNA_H-canaliculatus_F_contig10730.703.1|Name=mRNA_H-canaliculatus_F_contig10730.703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=472bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10730:390..861+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCAACGAACGGGTCAACAACGACGTGCCGTGACAACCGATGGCTACTG
GGCGTGGTGTCGTGGGTGCATTGCAGGGTTGAAGCTATTTGATAGCAACA
ATGGTGTGTTTTTTCGAGGAGGACAAGCGGGCGCGCGCAGATACCCAATA
GTTCTTTCGAAAGTTTCGACAGCATGGCTTCTGGCGAAGCTGACGGTCTT
TTGTTTCGAGTCGTGCCGCAAGGAGAGAAGTGGGGTCCTTTCTTCAGTAT
CTTTTTTCATGCTTGTTTTCGAACGAACGTGGCCTCAACGAAGGGCACCC
CTGTGGGTACTGAGTCTAATGCTCTCTGTCTTCACGCCCCCTCTGCCTGT
GTGCACTGTGAAGGCGTTGACGTCGTCGGTAACGAGCCGCGTGCTTGTAC
CCTCTTCCCAAGAGCTCAAATTGGCAGAGCGGCGATTAGGTTTGGGCTTG
CTGGCTTGAGCGTATCCTCGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10730:390..861+

>mRNA_H-canaliculatus_F_contig10730.703.1 ID=mRNA_H-canaliculatus_F_contig10730.703.1|Name=mRNA_H-canaliculatus_F_contig10730.703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10730:390..861+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCAACGAACGGGTCAACAACGACGTGCCGTGACAACCGATGGCTACTG
GGCGTGGTGTCGTGGGTGCATTGCAGGGTTGAAGCTATTTGATAGCAACA
ATGGTGTGTTTTTTCGAGGAGGACAAGCGGGCGCGCGCAGATACCCAATA
GTTCTTTCGAAAGTTTCGACAGCATGGCTTCTGGCGAAGCTGACGGTCTT
TTGTTTCGAGTCGTGCCGCAAGGAGAGAAGTGGGGTCCTTTCTTCAGTAT
CTTTTTTCATGCTTGTTTTCGAACGAACGTGGCCTCAACGAAGGGCACCC
CTGTGGGTACTGAGTCTAATGCTCTCTGTCTTCACGCCCCCTCTGCCTGT
GTGCACTGTGAAGGCGTTGACGTCGTCGGTAACGAGCCGCGTGCTTGTAC
CCTCTTCCCAAGAGCTCAAATTGGCAGAGCGGCGATTAGGTTTGGGCTTG
CTGGCTTGACTCCAACGAACGGGTCAACAACGACGTGCCGTGACAACCGA
TGGCTACTGGGCGTGGTGTCGTGGGTGCATTGCAGGGTTGAAGCTATTTG
ATAGCAACAATGGTGTGTTTTTTCGAGGAGGACAAGCGGGCGCGCGCAGA
TACCCAATAGTTCTTTCGAAAGTTTCGACAGCATGGCTTCTGGCGAAGCT
GACGGTCTTTTGTTTCGAGTCGTGCCGCAAGGAGAGAAGTGGGGTCCTTT
CTTCAGTATCTTTTTTCATGCTTGTTTTCGAACGAACGTGGCCTCAACGA
AGGGCACCCCTGTGGGTACTGAGTCTAATGCTCTCTGTCTTCACGCCCCC
TCTGCCTGTGTGCACTGTGAAGGCGTTGACGTCGTCGGTAACGAGCCGCG
TGCTTGTACCCTCTTCCCAAGAGCTCAAATTGGCAGAGCGGCGATTAGGT
TTGGGCTTGCTGGCTTGA
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