mRNA_H-canaliculatus_F_contig10728.697.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10728.697.1
Unique NamemRNA_H-canaliculatus_F_contig10728.697.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: D8LTW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW1_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.340e-128
Identity = 193/217 (88.94%), Postives = 206/217 (94.93%), Query Frame = 1
Query:    1 AQAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            A+AYVNGERVC YGPGGSFGELALMYNCERAATVRA + SRLWTMDLSTFRRSLATTASSQI+SRCEFLRKVPFLAELNNEQVNKLADALE KEF ++EYIIRQGQQGEDFFLI+EGVVSCTQAKSATDPTEMSLL LG GEYFGEMALML+EPRAANCIA +G VKCLSLDRTRFS LLGPIY+ILQQNMRLRILKGVPLLSKLT ++LC++AGAL
Sbjct:  228 AEAYVNGERVCGYGPGGSFGELALMYNCERAATVRATSDSRLWTMDLSTFRRSLATTASSQILSRCEFLRKVPFLAELNNEQVNKLADALEVKEFLQDEYIIRQGQQGEDFFLIEEGVVSCTQAKSATDPTEMSLLTLGPGEYFGEMALMLDEPRAANCIAVQGNVKCLSLDRTRFSNLLGPIYSILQQNMRLRILKGVPLLSKLTEQKLCRMAGAL 444          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A6H5JZB9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB9_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 2.880e-122
Identity = 193/217 (88.94%), Postives = 206/217 (94.93%), Query Frame = 1
Query:    1 AQAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            A+AYVNGERVC YGPGGSFGELALMYNCERAATVRA + SRLWTMDLSTFRR+LATTASSQI+SRCEFLRKVPFLAEL NEQVNKLADALE KEF ++EYIIRQGQQGEDFFLI+EGVVSCTQAKSATDPTEMSLL LG GEYFGEMALML+EPRAANCIA +G VKCLSLDRTRFS LLGPIY+ILQQNMRLRILKGVPLLSKLT++ELC+VAGAL
Sbjct:  307 AEAYVNGERVCGYGPGGSFGELALMYNCERAATVRATSDSRLWTMDLSTFRRTLATTASSQILSRCEFLRKVPFLAELTNEQVNKLADALEVKEFLQDEYIIRQGQQGEDFFLIEEGVVSCTQAKSATDPTEMSLLTLGPGEYFGEMALMLDEPRAANCIAVQGNVKCLSLDRTRFSNLLGPIYSILQQNMRLRILKGVPLLSKLTDDELCRVAGAL 523          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A835Z7Z1_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z1_9STRA)

HSP 1 Score: 275 bits (702), Expect = 6.300e-85
Identity = 146/217 (67.28%), Postives = 167/217 (76.96%), Query Frame = 1
Query:    1 AQAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            AQ  V+G  V  YGPG SFGELALMYNCERAATVRA T    WTM L TFR+ LATTAS Q+V RC+FLR V  L  L NEQV K+ADALE   F ++ YIIRQG+QG+ F+LI++G V CTQ +SATD TE  LL LG G+YFGEMALMLEEPRAANCIA  G V+CLSLDR++F  LLGP+ N+LQ NMRLRILK VPLL+KLT+ EL  VA AL
Sbjct:   35 AQILVDGVVVGDYGPGSSFGELALMYNCERAATVRATTDCTAWTMGLRTFRQLLATTASGQVVQRCDFLRHVELLKPLTNEQVTKIADALEPITFGQDAYIIRQGEQGDTFYLIEDGTVRCTQWRSATDTTEAPLLALGPGDYFGEMALMLEEPRAANCIAEGGPVRCLSLDRSKFFALLGPLQNVLQGNMRLRILKSVPLLTKLTDMELSSVADAL 251          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A835YV03_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV03_9STRA)

HSP 1 Score: 270 bits (691), Expect = 7.360e-83
Identity = 141/217 (64.98%), Postives = 162/217 (74.65%), Query Frame = 1
Query:    1 AQAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            A   V+G  V  YGP  SFGELALMYNCERAATV+A +A   WTM L  FRR LATTAS Q++ RC+FLR+V  LA L NEQV KLADALE   F E +YIIRQG+QG+ F+LI+EG V CTQ +SATD TE  LL L  G+YFGEMALMLEEPRAANCIA +  V+CL LDR +F  LLGP+  +LQ NMRLRILK VPLL+KLT+ EL  VA  L
Sbjct:   87 AMILVDGSEVGEYGPSSSFGELALMYNCERAATVKATSACTAWTMQLQAFRRLLATTASGQVMRRCDFLRRVELLAPLTNEQVTKLADALESVTFEEGQYIIRQGEQGDTFYLIEEGAVQCTQWRSATDTTEAPLLTLSPGDYFGEMALMLEEPRAANCIAKDRPVRCLMLDRAKFFALLGPLQTVLQNNMRLRILKSVPLLAKLTDPELSSVADTL 303          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A7S1UDS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDS0_9STRA)

HSP 1 Score: 243 bits (619), Expect = 3.880e-77
Identity = 124/216 (57.41%), Postives = 166/216 (76.85%), Query Frame = 1
Query:    4 QAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            + +V+G+RV  Y  GGSFGELALMY+  RAAT+RA   S+L+T+DL TFRR LATT+S+++++RCEFL+KV  L  L+N+Q+ K+A AL+E+ F+ENEYI+RQG+ G+ FF+IQ+G V CTQ KSA    E  LL+L  G+YFGEMALML+EPR ANCIA    V CL+L+R +F  LLGP+  +L + MR+RILK VPLLSKL++ EL  +A A+
Sbjct:   47 EVFVDGDRVGEYVRGGSFGELALMYDSPRAATIRATQTSKLYTLDLRTFRRILATTSSARMMNRCEFLKKVRLLEPLSNDQITKIAGALQEESFAENEYIVRQGESGDKFFIIQDGRVQCTQLKSAASDKETDLLQLHAGDYFGEMALMLDEPRHANCIAKSSAVACLTLNRQQFVDLLGPVQAVLGRMMRIRILKSVPLLSKLSDNELDVLADAM 262          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A418E8L3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E8L3_9STRA)

HSP 1 Score: 204 bits (519), Expect = 6.230e-61
Identity = 112/217 (51.61%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    4 QAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSAT-DPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            + YVN E V  Y  G +FGELAL+YNC RAAT+R IT   LWT+D ++FR+ LATTAS+  +SR +FL+ V  L  L++ Q+ K+A AL+ ++FS+  YII+QG++G  F+++ EG V CT   SAT D  E  L+ L KG+YFGEMALML EPR ANC+A +G V C  L R  F+ LLGP+ ++L + MR+R+L+ VPLL+ LT++EL  +A AL
Sbjct:  133 EIYVNDEVVGQYVGGDAFGELALLYNCPRAATIRTITPCSLWTVDRTSFRKILATTASTMQLSRVQFLQNVELLQRLSHNQLQKVAAALKLEQFSDGSYIIKQGEEGHTFYIVVEGTVQCT--TSATHDGVEKPLMTLTKGQYFGEMALMLNEPRQANCVA-KGTVSCYVLGRQDFTNLLGPLRSLLDRQMRIRVLRSVPLLNYLTDDELDILAHAL 346          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A3L6VLE6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VLE6_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.930e-60
Identity = 112/217 (51.61%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    4 QAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSAT-DPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            + YVN E V  Y  G +FGELAL+YNC RAAT+R IT   LWT+D ++FR+ LATTAS+  +SR +FL+ V  L  L++ Q+ K+A AL+ ++FS+  YII+QG++G  F+++ EG V CT   SAT D  E  L+ L KG+YFGEMALML EPR ANC+A +G V C  L R  F+ LLGP+ ++L + MR+R+L+ VPLL+ LT++EL  +A AL
Sbjct:  133 EIYVNNEVVGQYVGGDAFGELALLYNCPRAATIRTITPCSLWTVDRTSFRKILATTASTMQLSRVQFLQNVELLQRLSHNQLQKVAAALKLEQFSDGSYIIKQGEEGHTFYIVVEGTVQCT--TSATHDGVEKPLMTLTKGQYFGEMALMLNEPRQANCVA-KGTVSCYVLGRQDFTNLLGPLRSLLDRQMRIRVLRSVPLLNYLTDDELDILAHAL 346          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: K3WEA6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEA6_GLOUD)

HSP 1 Score: 202 bits (515), Expect = 4.120e-60
Identity = 108/215 (50.23%), Postives = 150/215 (69.77%), Query Frame = 1
Query:   13 VNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQ--AKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            V+ E V  Y  G +FGELAL+YNC RAAT+RAIT   LWT++ +TFR+ +ATTAS+  ++R  FL+ V  L  L+N Q+ K+A AL+ + F++ +YIIRQG  G  F++I EG V CT     + +D  E  L+ L +G YFGEMALML EPR ANCIA  G V C  +DR +F++LLGP+ +++ + MR+R+L+ VPLLS LT++EL  +A AL
Sbjct:  144 VDNELVGKYNNGDAFGELALLYNCPRAATIRAITGCILWTVERTTFRKIMATTASATQLARVNFLKNVELLQRLSNNQLQKVAAALKLQRFNDGDYIIRQGDDGNTFYIIVEGKVRCTSRGGGAGSDAVEKELMMLYRGNYFGEMALMLNEPRQANCIAV-GNVDCYVMDRAQFTKLLGPLRSLIDRQMRIRVLRSVPLLSSLTDDELDLLAHAL 357          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: H3GFR0_PHYRM (cGMP-dependent protein kinase n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GFR0_PHYRM)

HSP 1 Score: 208 bits (530), Expect = 3.000e-59
Identity = 107/213 (50.23%), Postives = 151/213 (70.89%), Query Frame = 1
Query:   13 VNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            ++G+ V  Y  G +FGELAL+YNC RAAT+RA T   LWT++ +TFR+ +ATTAS+  ++R  FL+ V  L  L+N Q+ K+A AL+ + F++ EYIIRQG+ G  F++I EG V CT    A++  E  L+KL +G YFGEMAL+L EPR ANCIA  G V C  +DR  F++LLGP+ +++ + MR+R+L+ VPLLS LT++EL  +A AL
Sbjct:  142 IDGKLVGTYTNGDAFGELALLYNCPRAATIRATTGCILWTVERTTFRKIMATTASATQLARVNFLKNVELLQRLSNNQLQKVAAALKLQRFNDGEYIIRQGEDGHTFYIIVEGTVRCTSRAGASEEAEKELMKLQRGSYFGEMALVLNEPRQANCIAV-GAVDCYVMDRAEFTKLLGPLRSLIDRQMRIRVLRSVPLLSSLTDDELDILAHAL 353          
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Match: A0A5D6XVB7_9STRA (cGMP-dependent protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVB7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 6.570e-59
Identity = 110/213 (51.64%), Postives = 148/213 (69.48%), Query Frame = 1
Query:   13 VNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTFRRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEYIIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALMLEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVPLLSKLTNEELCKVAGAL 651
            V+ E V  Y  G +FGELAL+YNC RAAT+RA +   LWT++ + FRR +ATTAS+  ++R  FL+ V  L  L+N Q+ K+A AL+ + FS+ +YIIRQG+ G  F++I EG V CT   S  D  E  L+ L +G YFGEMALML EPR ANCIA  G V C  +DRT+F+ LLGP+ +++ + MR+R+L+ VPLLS LT+EEL  +A AL
Sbjct:  139 VDNELVGKYSNGDAFGELALLYNCPRAATIRATSGCILWTVERTMFRRIMATTASATQLARVNFLKNVELLQRLSNNQLQKVAAALKLQRFSDGDYIIRQGEDGNTFYIIVEGKVRCTSRGSGADAAEKELMTLCRGNYFGEMALMLNEPRQANCIAI-GNVDCYVMDRTQFTTLLGPLRSLIDRQMRIRVLRSVPLLSSLTDEELDILAHAL 350          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10728.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW1_ECTSI1.340e-12888.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZB9_9PHAE2.880e-12288.94cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835Z7Z1_9STRA6.300e-8567.28cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A835YV03_9STRA7.360e-8364.98cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A7S1UDS0_9STRA3.880e-7757.41Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A418E8L3_9STRA6.230e-6151.61Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3L6VLE6_9STRA3.930e-6051.61Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
K3WEA6_GLOUD4.120e-6050.23Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GFR0_PHYRM3.000e-5950.23cGMP-dependent protein kinase n=24 Tax=Peronospora... [more]
A0A5D6XVB7_9STRA6.570e-5951.64cGMP-dependent protein kinase n=1 Tax=Pythium bras... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10728contigH-canaliculatus_F_contig10728:1684..4563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.3
Seed ortholog evalue7.8e-104
Seed eggNOG ortholog2880.D8LTW1
KEGG koko:K07376
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04970
KEGG ModuleM00694
EggNOG free text desc.cAMP-dependent protein kinase regulator activity
EggNOG OGsCOG0664@1,KOG1113@2759
EC2.7.11.12
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons4
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10728.697.1prot_H-canaliculatus_F_contig10728.697.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10728 1684..4563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.1111562-CDS-H-canaliculatus_F_contig10728:1683..18421622928736.1111562-CDS-H-canaliculatus_F_contig10728:1683..1842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 1684..1842 -
1696845544.518956-CDS-H-canaliculatus_F_contig10728:1683..18421696845544.518956-CDS-H-canaliculatus_F_contig10728:1683..1842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 1684..1842 -
1622928736.1295946-CDS-H-canaliculatus_F_contig10728:2242..24241622928736.1295946-CDS-H-canaliculatus_F_contig10728:2242..2424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 2243..2424 -
1696845544.5293524-CDS-H-canaliculatus_F_contig10728:2242..24241696845544.5293524-CDS-H-canaliculatus_F_contig10728:2242..2424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 2243..2424 -
1622928736.1484742-CDS-H-canaliculatus_F_contig10728:3185..32521622928736.1484742-CDS-H-canaliculatus_F_contig10728:3185..3252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 3186..3252 -
1696845544.5373924-CDS-H-canaliculatus_F_contig10728:3185..32521696845544.5373924-CDS-H-canaliculatus_F_contig10728:3185..3252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 3186..3252 -
1622928736.1628928-CDS-H-canaliculatus_F_contig10728:4317..45631622928736.1628928-CDS-H-canaliculatus_F_contig10728:4317..4563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 4318..4563 -
1696845544.5468023-CDS-H-canaliculatus_F_contig10728:4317..45631696845544.5468023-CDS-H-canaliculatus_F_contig10728:4317..4563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10728 4318..4563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10728.697.1

>prot_H-canaliculatus_F_contig10728.697.1 ID=prot_H-canaliculatus_F_contig10728.697.1|Name=mRNA_H-canaliculatus_F_contig10728.697.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
AQAYVNGERVCVYGPGGSFGELALMYNCERAATVRAITASRLWTMDLSTF
RRSLATTASSQIVSRCEFLRKVPFLAELNNEQVNKLADALEEKEFSENEY
IIRQGQQGEDFFLIQEGVVSCTQAKSATDPTEMSLLKLGKGEYFGEMALM
LEEPRAANCIATEGQVKCLSLDRTRFSQLLGPIYNILQQNMRLRILKGVP
LLSKLTNEELCKVAGAL*
back to top

mRNA from alignment at H-canaliculatus_F_contig10728:1684..4563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10728.697.1 ID=mRNA_H-canaliculatus_F_contig10728.697.1|Name=mRNA_H-canaliculatus_F_contig10728.697.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2880bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10728:1684..4563- (Hapterophycus canaliculatus Oshoro5f female)
GCGCAGGCATACGTGAACGGGGAACGGGTGTGCGTTTACGGCCCCGGAGG TTCCTTCGGCGAGCTGGCCCTCATGTACAACTGCGAGAGGGCGGCCACGG TGAGGGCGATCACGGCCTCCCGCCTGTGGACGATGGACCTGTCCACCTTC CGTCGCTCGCTGGCCACCACCGCAAGCAGTCAGATCGTCTCGAGGTGCGA GTTCCTGAGGAAGGTGCCCTTCCTCGCGGAGCTCAACAACGAGCAGGTGA GCGAGCGAGGCGGTCATGATCCGTCCCGGAAGGTGGTTTTGTTGGGGGTA TCGTGTGAGAGTGGGGGGGGGGGGCGGTATGTATGTCGGAGTGTGCCGTA ATTTTGGGGAGGGGTGCGGCGAAGCGCGCGGAGTTGGATGGTGCTGCAGC GGGGTACAATTTGACGTGGTAAGAAAGTGTCATCTTCTTCAGCCCTACCG CTCACGATGAGCTTGCTAGACGAGCGGATCCTCAGGAAATGCTCACTGGG CACCTCATCGCGGAATCAACATGCGCCATATACATGTCTCGTCTAGCACC ATCAATGTTTTTCCACCGTACTGAAGCCTCACTGTTAGGAATGCAACAAA AATTTTCCTGGGTCGCCGTAGTTGTGTCTCAGCCAAGGGTTTTCCTTCGG TGTTGTTGACTGACTCTTTCTTTCAAAAACTTTCTTTCGAAAACTGAGAG TCGTGATCAAAGGTGGCCTGAAATCGCCTGGTGGTGGAAGGATTAAGGCA GAGCAGTGGTGGGTTCTGTCAGGGGCTGCGCGCTTTCGCGGGTTATTTGG AGAGGGGACCAGAGGTCGGGTCTTATGTCGAAGCAAAAGCCCTGTGTTGT CTGTACAAAGTAAATCTTGCGGCGAGCAAGGACGCGGAAAAGCTTGTACT AGCTGTCTTAAAATTGAAGAAAAAATGACTCAAGTAACAACCTCCCCAAG TCCGAGTAAAGCAGAGCGATACCGGCTGCAGAGGCTCGCCCACGGCGATT TGTTCGCCCTCGTGCCCCCCGGTGGTAGTGTGTTCGCGCCTTACTGCGGG CTCGCCCACCAGTCTAGTCGCATTCTTGAACGCCGATCGCTCGCACCGAG GTTTCTCGTGGCAGCTTGCGGCTTTTCCAAGGCTTTGCTCTCCTCTCGGT TGTATTGCTCGGAAAAAAAGTAACAAAAGGCGGTCTTGGCAGTCGTGGCC CTCATGCCCTTCCTCTAACCGTCGCACGGCCCTTTCTCCTTTGCCGCGGT GTCGGTGTGGCTCGGCGTGGTGACGTTGGATCCGGGGGGGGATCTGTTTT CGTTTGGCCAGGTGAACAAGCTCGCGGATGCCCTGGAAGAGAAGGAGTTC TCCGAGAACGAGTACATCATCCGACAAGGTCTGTCAGGTTACCGTGGCGT AGGCGATGCGTACACTTGTACGTAGGCATGTTTGGTCGGGGGGTGGAGGG AAGGTGCTCGTAGTACGCACGCGTGTGTTCCTGTTTGTGCACCCCCGCCG GGAGAGGTCCGCTGGCACGAGCGTGGTTTGTCAGTTTGTTCGGCACGACC AGAAGTGCTTTCAGACGGTGAATCTTTCCGCCTGTGAGGCAAAGTCGAGT GCAACAGGGCGGACCTTCTTTCCAAAAGGCCCACCCGCGGGGAAGGCATC GCTGGATCGGGCCCATGAAATCGTGGACGCGCGGACGGGCATGGGACGCA TTTTCAAAGGGGTTGACCCGAGGTACCGGTCGATTACCCCTATGGTGTCG GAGGAGCAGTCAAGACCGTCGCTTGTCCCGATGCCTCGCGGCAGCGGCGG GAGAACGTGGCCGAAGGGCTGGTGCCAGAGCTTGGACGGTTCGGCAGCAC TTGGTGTTTGCGGTGTCTTGGGCAAGTATCACGCTGGAACGGGACACTCC CACCCCTTGCCCCTTCCTGGCGGCGAGGACGAGTGACCCGATGCGCGAAG GAGACGACGGCGGTTCCACGTCGTCCGCCCAAGCAGGACGCCGCCTCCCA CAAAATCGTCCCTCAACACGCCGGCGAAGGAAAAAGGCGCGGCGCGACTC CTCGCCCGTCTCTCCCCGCCCACGAACACGCCTTTCCAACATCCCTCTCG TCCGTCGCCTTTGTCCTCCCGCCGCCGCCGCCGCCGCAGGGCAGCAAGGG GAAGACTTCTTCCTGATCCAGGAGGGGGTCGTGTCTTGCACGCAGGCCAA GAGCGCGACGGACCCGACGGAGATGTCGCTGTTGAAGCTGGGGAAGGGGG AGTACTTCGGCGAGATGGCGCTGATGCTGGAGGAGCCTCGGGCGGCGAAC TGCATCGCCACCGAGGGCCAGGTACGCCTCGCGGGCGGGCGTGTGGTGAA GGCGCTGGATTTCGACGATGGTGCTGTGACTTTGGCCTTGCGTTTCGACT CTTGTTTTGGTGGGAACGGATCTGATGGCATTGGATGACGGTTTGGAGCG TTGGACATTGTAGGTAGTAACCCCCCGTCCGTTTTATCATGCCAAGACCA AGGGGGAGAGAACGGGGGGGAGATGGCGGGGGGGGCGTGCTTACTGCGTG AGAGTGTACCCACATGAATATGTGGGTGTTTGTGTATTTGTCTCGATTCC ACGGCGCACCCATCAGGCGGCCTCGACCCTACTCCAAAACAAGGTCGGAA ACGAAACGAACGAAACGAACGATACCTCCTTCCGTCGTCGTCGTCGTCGT CTTTTTTGTTGTTGTTGCCAGGTGAAGTGCCTGTCGCTGGACAGGACTCG CTTTTCGCAGCTCCTCGGGCCTATCTACAACATCCTGCAGCAGAACATGC GCCTCCGCATCTTGAAGGGGGTGCCTCTGCTCTCCAAGCTCACCAACGAA GAGCTCTGCAAAGTAGCGGGGGCCTTGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10728:1684..4563-

>mRNA_H-canaliculatus_F_contig10728.697.1 ID=mRNA_H-canaliculatus_F_contig10728.697.1|Name=mRNA_H-canaliculatus_F_contig10728.697.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10728:1684..4563- (Hapterophycus canaliculatus Oshoro5f female)
GCGCAGGCATACGTGAACGGGGAACGGGTGTGCGTTTACGGCCCCGGAGG
TTCCTTCGGCGAGCTGGCCCTCATGTACAACTGCGAGAGGGCGGCCACGG
TGAGGGCGATCACGGCCTCCCGCCTGTGGACGATGGACCTGTCCACCTTC
CGTCGCTCGCTGGCCACCACCGCAAGCAGTCAGATCGTCTCGAGGTGCGA
GTTCCTGAGGAAGGTGCCCTTCCTCGCGGAGCTCAACAACGAGCAGGCGC
AGGCATACGTGAACGGGGAACGGGTGTGCGTTTACGGCCCCGGAGGTTCC
TTCGGCGAGCTGGCCCTCATGTACAACTGCGAGAGGGCGGCCACGGTGAG
GGCGATCACGGCCTCCCGCCTGTGGACGATGGACCTGTCCACCTTCCGTC
GCTCGCTGGCCACCACCGCAAGCAGTCAGATCGTCTCGAGGTGCGAGTTC
CTGAGGAAGGTGCCCTTCCTCGCGGAGCTCAACAACGAGCAGGTGAACAA
GCTCGCGGATGCCCTGGAAGAGAAGGAGTTCTCCGAGAACGAGTACATCA
TCCGACAAGGTGAACAAGCTCGCGGATGCCCTGGAAGAGAAGGAGTTCTC
CGAGAACGAGTACATCATCCGACAAGGGCAGCAAGGGGAAGACTTCTTCC
TGATCCAGGAGGGGGTCGTGTCTTGCACGCAGGCCAAGAGCGCGACGGAC
CCGACGGAGATGTCGCTGTTGAAGCTGGGGAAGGGGGAGTACTTCGGCGA
GATGGCGCTGATGCTGGAGGAGCCTCGGGCGGCGAACTGCATCGCCACCG
AGGGCCAGGGCAGCAAGGGGAAGACTTCTTCCTGATCCAGGAGGGGGTCG
TGTCTTGCACGCAGGCCAAGAGCGCGACGGACCCGACGGAGATGTCGCTG
TTGAAGCTGGGGAAGGGGGAGTACTTCGGCGAGATGGCGCTGATGCTGGA
GGAGCCTCGGGCGGCGAACTGCATCGCCACCGAGGGCCAGGTGAAGTGCC
TGTCGCTGGACAGGACTCGCTTTTCGCAGCTCCTCGGGCCTATCTACAAC
ATCCTGCAGCAGAACATGCGCCTCCGCATCTTGAAGGGGGTGCCTCTGCT
CTCCAAGCTCACCAACGAAGAGCTCTGCAAAGTAGCGGGGGCCTTGTGAG
TGAAGTGCCTGTCGCTGGACAGGACTCGCTTTTCGCAGCTCCTCGGGCCT
ATCTACAACATCCTGCAGCAGAACATGCGCCTCCGCATCTTGAAGGGGGT
GCCTCTGCTCTCCAAGCTCACCAACGAAGAGCTCTGCAAAGTAGCGGGGG
CCTTGTGA
back to top