mRNA_H-canaliculatus_F_contig10727.695.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10727.695.1
Unique NamemRNA_H-canaliculatus_F_contig10727.695.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10727.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10727contigH-canaliculatus_F_contig10727:2634..3072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10727.695.1prot_H-canaliculatus_F_contig10727.695.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10727 2661..2969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.7932773-UTR-H-canaliculatus_F_contig10727:2633..26601622928735.7932773-UTR-H-canaliculatus_F_contig10727:2633..2660Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10727 2634..2660 -
1696845544.4255214-UTR-H-canaliculatus_F_contig10727:2633..26601696845544.4255214-UTR-H-canaliculatus_F_contig10727:2633..2660Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10727 2634..2660 -
1622928735.8543265-UTR-H-canaliculatus_F_contig10727:2969..30721622928735.8543265-UTR-H-canaliculatus_F_contig10727:2969..3072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10727 2970..3072 -
1696845544.4590068-UTR-H-canaliculatus_F_contig10727:2969..30721696845544.4590068-UTR-H-canaliculatus_F_contig10727:2969..3072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10727 2970..3072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.8152044-CDS-H-canaliculatus_F_contig10727:2660..27211622928735.8152044-CDS-H-canaliculatus_F_contig10727:2660..2721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 2661..2721 -
1696845544.436724-CDS-H-canaliculatus_F_contig10727:2660..27211696845544.436724-CDS-H-canaliculatus_F_contig10727:2660..2721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 2661..2721 -
1622928735.8337226-CDS-H-canaliculatus_F_contig10727:2736..29691622928735.8337226-CDS-H-canaliculatus_F_contig10727:2736..2969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 2737..2969 -
1696845544.4510303-CDS-H-canaliculatus_F_contig10727:2736..29691696845544.4510303-CDS-H-canaliculatus_F_contig10727:2736..2969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 2737..2969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10727.695.1

>prot_H-canaliculatus_F_contig10727.695.1 ID=prot_H-canaliculatus_F_contig10727.695.1|Name=mRNA_H-canaliculatus_F_contig10727.695.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
MGSVRRIHFLQMQKQEGSCWRSVWLLVRDRGDILHTATRLRAVARARTQQ
RTVPVPLRAAIQAPSPPKREENNSDSIYVVTCWCGNRPLRRFTVLSG*
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mRNA from alignment at H-canaliculatus_F_contig10727:2634..3072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10727.695.1 ID=mRNA_H-canaliculatus_F_contig10727.695.1|Name=mRNA_H-canaliculatus_F_contig10727.695.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=439bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10727:2634..3072- (Hapterophycus canaliculatus Oshoro5f female)
TGCATCGGCGTTTGTAACACCATAACGAGACATCGCTGAGTTTGAGGAAG
AAAGTGAAAAGTTCCACAGGAGCGAGTGGGAGTGTAGTCGCAGAGCTCTG
TCGATGGGCTCCGTTAGACGGATCCATTTCCTTCAGATGCAGAAACAGGA
GGGAAGTTGTTGGCGCAGTGTGTGGTTACTTGTTAGGGATCGAGGTGATA
TACTGCACACGGCGACAAGACTGAGGGCCGTAGCAAGGGCGCGGACACAA
CAGCGAACGGTCCCGGTGCCTCTGAGAGCAGCGATCCAAGCGCCCTCCCC
CCCAAAACGGGAAGAAAACAATTCAGACAGCATCTAGTCACGATTTTTCA
GTGTGGTAACGTGTTGGTGTGGGAACCGACCACTACGGCGATTCACGGTA
CTTTCTGGATGATAATTGGCCCTGACGGTAGTTCCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10727:2634..3072-

>mRNA_H-canaliculatus_F_contig10727.695.1 ID=mRNA_H-canaliculatus_F_contig10727.695.1|Name=mRNA_H-canaliculatus_F_contig10727.695.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10727:2634..3072- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTCCGTTAGACGGATCCATTTCCTTCAGATGCAGAAACAGGAGGG
AAGTTGTTGGCGCAGTGTGTGGTTACTTGTTAGGGATCGAGGTGATATAC
TGCACACGGCGACAAGACTGAGGGCCGTAGCAAGGGCGCGGACACAACAG
CGAACGGTCCCGGTGCCTCTGAGAGCAGCGATCCAAGCGCCCTCCCCCCC
AAAACGGGAAGAAAACAATTCAGACAGCATCTAATGGGCTCCGTTAGACG
GATCCATTTCCTTCAGATGCAGAAACAGGAGGGAAGTTGTTGGCGCAGTG
TGTGGTTACTTGTTAGGGATCGAGGTGATATACTGCACACGGCGACAAGA
CTGAGGGCCGTAGCAAGGGCGCGGACACAACAGCGAACGGTCCCGGTGCC
TCTGAGAGCAGCGATCCAAGCGCCCTCCCCCCCAAAACGGGAAGAAAACA
ATTCAGACAGCATCTATGTGGTAACGTGTTGGTGTGGGAACCGACCACTA
CGGCGATTCACGGTACTTTCTGGATGATGTGGTAACGTGTTGGTGTGGGA
ACCGACCACTACGGCGATTCACGGTACTTTCTGGATGA
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