mRNA_H-canaliculatus_F_contig10727.694.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10727.694.1
Unique NamemRNA_H-canaliculatus_F_contig10727.694.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10727.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10727contigH-canaliculatus_F_contig10727:1561..2272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.7283697-CDS-H-canaliculatus_F_contig10727:1560..16481622928735.7283697-CDS-H-canaliculatus_F_contig10727:1560..1648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 1561..1648 +
1696845544.404524-CDS-H-canaliculatus_F_contig10727:1560..16481696845544.404524-CDS-H-canaliculatus_F_contig10727:1560..1648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 1561..1648 +
1622928735.744595-CDS-H-canaliculatus_F_contig10727:2042..22721622928735.744595-CDS-H-canaliculatus_F_contig10727:2042..2272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 2043..2272 +
1696845544.4135826-CDS-H-canaliculatus_F_contig10727:2042..22721696845544.4135826-CDS-H-canaliculatus_F_contig10727:2042..2272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 2043..2272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10727.694.1prot_H-canaliculatus_F_contig10727.694.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10727 1561..2272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10727.694.1

>prot_H-canaliculatus_F_contig10727.694.1 ID=prot_H-canaliculatus_F_contig10727.694.1|Name=mRNA_H-canaliculatus_F_contig10727.694.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
VAKFPFPAVIYPQEFHLNGGWETHEDKSQVFSALPPWPTLQLTFEMPSPK
RRRCEPLLWSSAGGIDMPAPHGVPLHTSTLSTKCTIDYLCVSWVSTIASF
FLSLSC
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mRNA from alignment at H-canaliculatus_F_contig10727:1561..2272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10727.694.1 ID=mRNA_H-canaliculatus_F_contig10727.694.1|Name=mRNA_H-canaliculatus_F_contig10727.694.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=712bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10727:1561..2272+ (Hapterophycus canaliculatus Oshoro5f female)
GTTGCCAAGTTTCCTTTTCCCGCGGTGATATACCCCCAAGAGTTCCACCT
GAATGGTGGTTGGGAAACACACGAAGATAAATCACAAGGTAGCTACCATT
TCCATCCAAAGCGTTACCACGGAATTCATATTCTCCAGTTTTTGCTTAAT
CGATTACCGTGCAAAATGTCGAACTCCCGCGGCTGTTGGGTTACCACCCA
ACCGAGAAATACCGTGCACATATAGTGGGCTAAAACTTGGAAATTGCTCT
TCGACTTGAATTGTGAAATAATTTACTCAGGGTCTGAGCTTTTCAGAAGA
GCCCTACGAAAACAGCACCAATCATCAGCGAAGCAAAGACTCCCTGTTTT
TCTTACACCCGCCACCCGATCTGCGACCTGGCTTCTGGCGAACTGTGGAT
TCCTGAAACCAGTCTTTTTTTTTTTTTTTCCGTTCAACCAATTGCTGAAA
TCGCTCCGATGTGACGTCCCACGTTGCTGCAGTTTTCTCAGCACTTCCTC
CGTGGCCGACACTTCAACTTACGTTTGAGATGCCGTCACCAAAGAGGCGC
CGCTGCGAACCGCTGCTGTGGAGCTCCGCTGGAGGAATCGACATGCCGGC
TCCTCACGGTGTCCCTCTCCACACGTCTACTCTCTCGACCAAATGTACGA
TCGACTATCTCTGCGTTTCGTGGGTCTCTACGATAGCATCATTCTTTTTG
TCTCTGTCGTGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10727:1561..2272+

>mRNA_H-canaliculatus_F_contig10727.694.1 ID=mRNA_H-canaliculatus_F_contig10727.694.1|Name=mRNA_H-canaliculatus_F_contig10727.694.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10727:1561..2272+ (Hapterophycus canaliculatus Oshoro5f female)
GTTGCCAAGTTTCCTTTTCCCGCGGTGATATACCCCCAAGAGTTCCACCT
GAATGGTGGTTGGGAAACACACGAAGATAAATCACAAGGTTGCCAAGTTT
CCTTTTCCCGCGGTGATATACCCCCAAGAGTTCCACCTGAATGGTGGTTG
GGAAACACACGAAGATAAATCACAAGTTTTCTCAGCACTTCCTCCGTGGC
CGACACTTCAACTTACGTTTGAGATGCCGTCACCAAAGAGGCGCCGCTGC
GAACCGCTGCTGTGGAGCTCCGCTGGAGGAATCGACATGCCGGCTCCTCA
CGGTGTCCCTCTCCACACGTCTACTCTCTCGACCAAATGTACGATCGACT
ATCTCTGCGTTTCGTGGGTCTCTACGATAGCATCATTCTTTTTGTCTCTG
TCGTGTTTTTCTCAGCACTTCCTCCGTGGCCGACACTTCAACTTACGTTT
GAGATGCCGTCACCAAAGAGGCGCCGCTGCGAACCGCTGCTGTGGAGCTC
CGCTGGAGGAATCGACATGCCGGCTCCTCACGGTGTCCCTCTCCACACGT
CTACTCTCTCGACCAAATGTACGATCGACTATCTCTGCGTTTCGTGGGTC
TCTACGATAGCATCATTCTTTTTGTCTCTGTCGTGT
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