mRNA_H-canaliculatus_F_contig10725.692.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10725.692.1
Unique NamemRNA_H-canaliculatus_F_contig10725.692.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A6H5L087_9PHAE (Calreticulin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L087_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.930e-33
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 QAKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            QAKIYFQEKFDDEGWRERWTVPTKWK ADELG WGWTAGEWYGGSADDKGIQTSE+NR+ G
Sbjct:   21 QAKIYFQEKFDDEGWRERWTVPTKWKPADELGEWGWTAGEWYGGSADDKGIQTSENNRFYG 81
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A835ZEE0_9STRA (Calreticulin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.290e-23
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            AK++F+E F+DEGWRERWTVPTKWKS  ELG WGWT G+W+GG   +KGIQTS+D+R+ G
Sbjct:   22 AKVFFREHFNDEGWRERWTVPTKWKSESELGEWGWTVGKWHGGDESNKGIQTSQDSRFYG 81
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A7R9ZGF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGF7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.180e-19
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            A++YF+E+F+D+GW +RWT+P+ WKS  E+G W  TAGEWYG  AD KGIQTSED R+ G
Sbjct:   45 AEVYFKEQFNDDGWADRWTIPSDWKSKSEMGEWKHTAGEWYGDEAD-KGIQTSEDARFYG 103
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: K0SAG6_THAOC (Calreticulin n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAG6_THAOC)

HSP 1 Score: 87.0 bits (214), Expect = 1.040e-18
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            A++YF+E+F+D+GW ERWTV + WKS  ELG W  T GEWYGG   DKGIQTSED R+ G
Sbjct:   18 AEVYFKEQFNDDGWSERWTVSSDWKSKSELGEWKHTTGEWYGGDESDKGIQTSEDARFYG 77
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A7S2S2C9_9STRA (Calreticulin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.660e-18
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            A+IYF+E+F+DEGW++RWTV ++WKS  E+G W  TAGEW+G  ADDKGIQTS+D R+ G
Sbjct:   33 AEIYFKEQFNDEGWKDRWTVSSEWKSKSEMGEWKHTAGEWHG-DADDKGIQTSQDARFYG 91
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A7S4K1Y8_9STRA (Calreticulin n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K1Y8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.190e-17
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            A++YF+E+F+D+GW +RWTVP+ WKS  ELG W  T+GEWYG  AD KGIQTSE+ R+ G
Sbjct:   56 AEVYFKEQFNDDGWSDRWTVPSDWKSKSELGEWKHTSGEWYGDEAD-KGIQTSEEARFYG 114
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A7S1Y210_9STRA (Calreticulin n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y210_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.720e-15
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
             + + +E+F+DEGW +RWT PTKWK A E+G W  TAGEWY    +DKGIQTSED R+ G
Sbjct:   48 GETFLKEQFNDEGWTKRWTEPTKWKPAAEMGKWAHTAGEWYA-DKEDKGIQTSEDARFYG 106
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BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: B8C4G1_THAPS (Calreticulin-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4G1_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 7.590e-15
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            A+IYF+E+F+D+ W++RWT+ + WKS+ ELG W  TAG+W+G  A DKGI+TS D R+ G
Sbjct:   17 AEIYFKEQFNDDAWKDRWTIASDWKSSSELGEWSHTAGDWHG-DAQDKGIKTSTDARFYG 75
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A7S1C8L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8L2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.040e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            AK+YF+E+F+D+GW +RW + + WKS+ ELGA   TAG+WYG   DD GIQT ED R+ G
Sbjct:   30 AKVYFKEQFNDDGWEDRWVISSDWKSSSELGAIDRTAGKWYG-DEDDTGIQTGEDARFYG 88
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Match: A0A7S2BRV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRV9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.310e-11
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    4 AKIYFQEKFDDEGWRERWTVPT-KWKSADELGAWGWTAGEWYGGSADDKGIQTSEDNRWVG 183
            AK+YF+E+F+D+ W  RW   T   KSA ++GA+ WTAGEWYG   +DKGI+TS+D +  G
Sbjct:   29 AKVYFKEQFNDDKWESRWVASTFPGKSASDMGAFEWTAGEWYG-DENDKGIKTSQDAKHYG 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10725.692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5L087_9PHAE8.930e-3391.80Calreticulin n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835ZEE0_9STRA3.290e-2368.33Calreticulin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7R9ZGF7_9STRA1.180e-1961.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
K0SAG6_THAOC1.040e-1863.33Calreticulin n=1 Tax=Thalassiosira oceanica TaxID=... [more]
A0A7S2S2C9_9STRA7.660e-1863.33Calreticulin n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A7S4K1Y8_9STRA4.190e-1761.67Calreticulin n=2 Tax=Odontella aurita TaxID=265563... [more]
A0A7S1Y210_9STRA4.720e-1558.33Calreticulin n=2 Tax=Grammatophora oceanica TaxID=... [more]
B8C4G1_THAPS7.590e-1555.00Calreticulin-like protein (Fragment) n=1 Tax=Thala... [more]
A0A7S1C8L2_9STRA3.040e-1456.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2BRV9_9STRA4.310e-1152.46Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10725contigH-canaliculatus_F_contig10725:4201..4383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue8.2e-27
Seed eggNOG ortholog2880.D7FZD0
Preferred nameCALR
KEGG koko:K08057,ko:K10098
KEGG Pathwayko04141,ko04145,ko04612,ko05142,ko05166,map04141,map04145,map04612,map05142,map05166
GOsGO:0000003,GO:0000122,GO:0001669,GO:0001846,GO:0001848,GO:0001849,GO:0002376,GO:0002396,GO:0002397,GO:0002474,GO:0002478,GO:0002479,GO:0002501,GO:0002502,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005102,GO:0005178,GO:0005488,GO:0005506,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005790,GO:0005793,GO:0005794,GO:0005829,GO:0005844,GO:0005886,GO:0006355,GO:0006357,GO:0006417,GO:0006457,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006897,GO:0006898,GO:0006906,GO:0006909,GO:0006911,GO:0006913,GO:0006950,GO:0006984,GO:0006986,GO:0006996,GO:0007010,GO:0007044,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007422,GO:0007507,GO:0007568,GO:0007569,GO:0007588,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008284,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009755,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009897,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010324,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010594,GO:0010595,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010632,GO:0010634,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010721,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0010941,GO:0010948,GO:0012501,GO:0012505,GO:0012506,GO:0014070,GO:0014706,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016528,GO:0016529,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019884,GO:0019899,GO:0019953,GO:0022008,GO:0022414,GO:0022417,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030003,GO:0030029,GO:0030036,GO:0030100,GO:0030139,GO:0030141,GO:0030154,GO:0030155,GO:0030176,GO:0030246,GO:0030334,GO:0030335,GO:0030336,GO:0030421,GO:0030431,GO:0030496,GO:0030518,GO:0030522,GO:0030659,GO:0030666,GO:0030670,GO:0030865,GO:0030866,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031581,GO:0031625,GO:0031647,GO:0031958,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0031983,GO:0031984,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032355,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033143,GO:0033144,GO:0033218,GO:0033365,GO:0033554,GO:0033574,GO:0033993,GO:0034248,GO:0034249,GO:0034329,GO:0034330,GO:0034504,GO:0034613,GO:0034620,GO:0034622,GO:0034975,GO:0034976,GO:0035051,GO:0035257,GO:0035258,GO:0035966,GO:0035967,GO:0036500,GO:0040012,GO:0040013,GO:0040017,GO:0040020,GO:0042048,GO:0042127,GO:0042175,GO:0042221,GO:0042277,GO:0042493,GO:0042562,GO:0042590,GO:0042592,GO:0042692,GO:0042824,GO:0042886,GO:0042921,GO:0042981,GO:0043067,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044183,GO:0044238,GO:0044322,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0045169,GO:0045184,GO:0045335,GO:0045471,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045785,GO:0045786,GO:0045787,GO:0045807,GO:0045892,GO:0045934,GO:0046677,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048232,GO:0048284,GO:0048385,GO:0048387,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048699,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0048878,GO:0050681,GO:0050764,GO:0050766,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050821,GO:0050839,GO:0050896,GO:0050920,GO:0050921,GO:0051049,GO:0051050,GO:0051082,GO:0051087,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051208,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0051272,GO:0051427,GO:0051445,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051960,GO:0051961,GO:0055007,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060205,GO:0060255,GO:0060284,GO:0060537,GO:0060627,GO:0061024,GO:0061025,GO:0061061,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0071156,GO:0071157,GO:0071241,GO:0071248,GO:0071285,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071556,GO:0071682,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0080090,GO:0090174,GO:0090398,GO:0097159,GO:0097223,GO:0097305,GO:0097708,GO:0098552,GO:0098553,GO:0098588,GO:0098657,GO:0098771,GO:0098796,GO:0098805,GO:0098827,GO:0099024,GO:0099503,GO:1900024,GO:1900026,GO:1901163,GO:1901164,GO:1901222,GO:1901224,GO:1901363,GO:1901564,GO:1901654,GO:1901700,GO:1902531,GO:1902533,GO:1902679,GO:1903506,GO:1903507,GO:1990668,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2000147,GO:2000241,GO:2000242,GO:2000508,GO:2000510,GO:2001141
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG0674@1,KOG0674@2759
Ec32 ortholog descriptionCalreticulin
Ec32 orthologEc-13_002290.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04091
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.679479-CDS-H-canaliculatus_F_contig10725:4200..43831622928735.679479-CDS-H-canaliculatus_F_contig10725:4200..4383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10725 4201..4383 +
1696845544.3921309-CDS-H-canaliculatus_F_contig10725:4200..43831696845544.3921309-CDS-H-canaliculatus_F_contig10725:4200..4383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10725 4201..4383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10725.692.1prot_H-canaliculatus_F_contig10725.692.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10725 4201..4383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10725.692.1

>prot_H-canaliculatus_F_contig10725.692.1 ID=prot_H-canaliculatus_F_contig10725.692.1|Name=mRNA_H-canaliculatus_F_contig10725.692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
QAKIYFQEKFDDEGWRERWTVPTKWKSADELGAWGWTAGEWYGGSADDKG
IQTSEDNRWVG
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mRNA from alignment at H-canaliculatus_F_contig10725:4201..4383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10725.692.1 ID=mRNA_H-canaliculatus_F_contig10725.692.1|Name=mRNA_H-canaliculatus_F_contig10725.692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=183bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10725:4201..4383+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGAAGATCTATTTCCAGGAGAAGTTCGACGACGAGGGCTGGCGGGA
GCGATGGACCGTGCCGACGAAGTGGAAGAGCGCGGACGAGCTGGGGGCGT
GGGGGTGGACGGCCGGGGAGTGGTACGGGGGCTCCGCGGATGACAAGGGG
ATCCAGACATCCGAGGACAACAGGTGGGTGGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10725:4201..4383+

>mRNA_H-canaliculatus_F_contig10725.692.1 ID=mRNA_H-canaliculatus_F_contig10725.692.1|Name=mRNA_H-canaliculatus_F_contig10725.692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10725:4201..4383+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGAAGATCTATTTCCAGGAGAAGTTCGACGACGAGGGCTGGCGGGA
GCGATGGACCGTGCCGACGAAGTGGAAGAGCGCGGACGAGCTGGGGGCGT
GGGGGTGGACGGCCGGGGAGTGGTACGGGGGCTCCGCGGATGACAAGGGG
ATCCAGACATCCGAGGACAACAGGTGGGTGGGTCAGGCGAAGATCTATTT
CCAGGAGAAGTTCGACGACGAGGGCTGGCGGGAGCGATGGACCGTGCCGA
CGAAGTGGAAGAGCGCGGACGAGCTGGGGGCGTGGGGGTGGACGGCCGGG
GAGTGGTACGGGGGCTCCGCGGATGACAAGGGGATCCAGACATCCGAGGA
CAACAGGTGGGTGGGT
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