mRNA_H-canaliculatus_F_contig10724.691.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10724.691.1
Unique NamemRNA_H-canaliculatus_F_contig10724.691.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10724.691.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.690e-50
Identity = 88/99 (88.89%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 QADMQSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTATQASKLGILDSFDVDLNPAQQMAAMVQWHRETVGMAALYEIPHQMTQTPQNDPAKSPF 297
            +ADM+SFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTA+QA+K+GI+DSFDVDLNPAQ MAA+VQWH+ETVGMAALYEIPHQM QTP NDPAKSPF
Sbjct:  769 EADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQ-MAAIVQWHKETVGMAALYEIPHQMMQTPLNDPAKSPF 866
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BLAST of mRNA_H-canaliculatus_F_contig10724.691.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 4.320e-50
Identity = 87/99 (87.88%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:    1 QADMQSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTATQASKLGILDSFDVDLNPAQQMAAMVQWHRETVGMAALYEIPHQMTQTPQNDPAKSPF 297
            +AD++SFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTA QA+K+GI+DSFDVDLNP Q MAA+VQWH+ETVGMAALYEIPHQMTQTP NDPAKSPF
Sbjct: 1092 EADIRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTAAQAAKVGIVDSFDVDLNPVQ-MAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPF 1189
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BLAST of mRNA_H-canaliculatus_F_contig10724.691.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 154 bits (390), Expect = 1.320e-41
Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 QADMQSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTATQASKLGILDSFDVDLNPAQQMAAMVQWHRETVGMAALYEIPHQMTQTPQNDPAKSPF 297
            +A+  +F+PKL VD+G+GPGKGLGPRL+VGLASAAPLPLTATQA K+GI DSFDVDLNPAQ +A++VQWHRET+GM ALY+IPHQ+T+TPQ DP K PF
Sbjct:  443 EANFPTFNPKLGVDVGQGPGKGLGPRLYVGLASAAPLPLTATQADKVGIEDSFDVDLNPAQ-LASIVQWHRETLGMVALYKIPHQLTRTPQMDPEKCPF 540
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10724.691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZW2_ECTSI1.690e-5088.89Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KQM7_9PHAE4.320e-5087.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2S1PRV6_FUCSE1.320e-4174.75Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10724contigH-canaliculatus_F_contig10724:3001..3698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.7e-42
Seed eggNOG ortholog2880.D7FZW2
KEGG koko:K11592
KEGG Pathwayko05206,map05206
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10724.691.1prot_H-canaliculatus_F_contig10724.691.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10724 3001..3689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.5873096-CDS-H-canaliculatus_F_contig10724:3000..31141622928735.5873096-CDS-H-canaliculatus_F_contig10724:3000..3114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10724 3001..3114 -
1696845544.3547122-CDS-H-canaliculatus_F_contig10724:3000..31141696845544.3547122-CDS-H-canaliculatus_F_contig10724:3000..3114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10724 3001..3114 -
1622928735.604975-CDS-H-canaliculatus_F_contig10724:3515..36891622928735.604975-CDS-H-canaliculatus_F_contig10724:3515..3689Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10724 3516..3689 -
1696845544.3666005-CDS-H-canaliculatus_F_contig10724:3515..36891696845544.3666005-CDS-H-canaliculatus_F_contig10724:3515..3689Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10724 3516..3689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.622745-UTR-H-canaliculatus_F_contig10724:3689..36981622928735.622745-UTR-H-canaliculatus_F_contig10724:3689..3698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10724 3690..3698 -
1696845544.3817801-UTR-H-canaliculatus_F_contig10724:3689..36981696845544.3817801-UTR-H-canaliculatus_F_contig10724:3689..3698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10724 3690..3698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10724.691.1

>prot_H-canaliculatus_F_contig10724.691.1 ID=prot_H-canaliculatus_F_contig10724.691.1|Name=mRNA_H-canaliculatus_F_contig10724.691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MQSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTATQASKLGILDSF
DVDLNPAQQMAAMVQWHRETVGMAALYEIPHQMTQTPQNDPAKSPF
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mRNA from alignment at H-canaliculatus_F_contig10724:3001..3698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10724.691.1 ID=mRNA_H-canaliculatus_F_contig10724.691.1|Name=mRNA_H-canaliculatus_F_contig10724.691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=698bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10724:3001..3698- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCGACATGCAGTCATTCCACCCTAAGCTCAAGGTCGACCTCGGTCG
CGGGCCGGGCAAGGGTCTTGGCCCTCGCCTGTTCGTAGGGCTGGCCAGCG
CGGCTCCCCTCCCTCTCACGGCCACCCAGGCCTCCAAGCTCGGCATCCTG
GACAGCTTCGACGTCGACCTCAATCCAGCGCAGGTGCCGCAGAGTCGTCA
GCGCCACTTCGCTTATCGGAGCACGGGCTTCGCTTCCCTGTTCTGCTGCT
GCTTGGTGGCGTTCGGGGATAATTCTAGAGCGTGGAGAAAGAGAATCCCG
AAATTAGTCACCGGTTGGAGGAAAGTTAGTTGATTCGATATGCGGTGTAT
TTATTTTTGCTTTTAGTAGGTTGTGGTTTGTGCGGGCGATGGAGCCTCTG
TTATTTCTCCTTGCGCCTTTTCTTCTTCCTTCCTGTGCATGGAACCTCTC
GTCTAAAGACAGGTGTCGCGTCTTTGGACGGACATTCGTTCGTATTCATG
ATTGTCCTAGAAGGTATTCCTCTTGACCTTTGGGCGTGCATGCGCGCGTG
TTTTCGACGCCCGGACGCATCGCACGCCTTTGAGCAGATGGCGGCCATGG
TCCAATGGCACCGGGAGACGGTCGGCATGGCCGCTCTGTACGAGATCCCC
CACCAGATGACCCAAACGCCGCAGAACGACCCAGCCAAGTCGCCCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10724:3001..3698-

>mRNA_H-canaliculatus_F_contig10724.691.1 ID=mRNA_H-canaliculatus_F_contig10724.691.1|Name=mRNA_H-canaliculatus_F_contig10724.691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10724:3001..3698- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGTCATTCCACCCTAAGCTCAAGGTCGACCTCGGTCGCGGGCCGGG
CAAGGGTCTTGGCCCTCGCCTGTTCGTAGGGCTGGCCAGCGCGGCTCCCC
TCCCTCTCACGGCCACCCAGGCCTCCAAGCTCGGCATCCTGGACAGCTTC
GACGTCGACCTCAATCCAGCGCAGATGCAGTCATTCCACCCTAAGCTCAA
GGTCGACCTCGGTCGCGGGCCGGGCAAGGGTCTTGGCCCTCGCCTGTTCG
TAGGGCTGGCCAGCGCGGCTCCCCTCCCTCTCACGGCCACCCAGGCCTCC
AAGCTCGGCATCCTGGACAGCTTCGACGTCGACCTCAATCCAGCGCAGCA
GATGGCGGCCATGGTCCAATGGCACCGGGAGACGGTCGGCATGGCCGCTC
TGTACGAGATCCCCCACCAGATGACCCAAACGCCGCAGAACGACCCAGCC
AAGTCGCCCTTCCAGATGGCGGCCATGGTCCAATGGCACCGGGAGACGGT
CGGCATGGCCGCTCTGTACGAGATCCCCCACCAGATGACCCAAACGCCGC
AGAACGACCCAGCCAAGTCGCCCTTC
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