mRNA_H-canaliculatus_F_contig10715.684.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10715.684.1
Unique NamemRNA_H-canaliculatus_F_contig10715.684.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10715.684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10715contigH-canaliculatus_F_contig10715:1973..2944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size592
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928734.6300857-CDS-H-canaliculatus_F_contig10715:1973..23631622928734.6300857-CDS-H-canaliculatus_F_contig10715:1973..2363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10715 1974..2363 -
1696845543.947834-CDS-H-canaliculatus_F_contig10715:1973..23631696845543.947834-CDS-H-canaliculatus_F_contig10715:1973..2363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10715 1974..2363 -
1622928734.647852-CDS-H-canaliculatus_F_contig10715:2743..29441622928734.647852-CDS-H-canaliculatus_F_contig10715:2743..2944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10715 2744..2944 -
1696845543.9560525-CDS-H-canaliculatus_F_contig10715:2743..29441696845543.9560525-CDS-H-canaliculatus_F_contig10715:2743..2944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10715 2744..2944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10715.684.1prot_H-canaliculatus_F_contig10715.684.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10715 1974..2944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10715.684.1

>prot_H-canaliculatus_F_contig10715.684.1 ID=prot_H-canaliculatus_F_contig10715.684.1|Name=mRNA_H-canaliculatus_F_contig10715.684.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
GDGTGGSSDGADAPPAEGNEKEAPPAGLATAAAAGAATAEATTATPAEVM
APPAGGVVVPAADPPVEVGTVEEPDAEMTDVDTPAAPATAAPAPAAPAAA
PAAGDSIPSSSSTTAPASTAPATGTTATPTGVPGGGQDTDGDAAMSEAAP
APAPAPAAAAVTAASAVPAPAAAANEVPGAGVTGGGLVAVPAPGAAA
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mRNA from alignment at H-canaliculatus_F_contig10715:1973..2944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10715.684.1 ID=mRNA_H-canaliculatus_F_contig10715.684.1|Name=mRNA_H-canaliculatus_F_contig10715.684.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10715:1973..2944- (Hapterophycus canaliculatus Oshoro5f female)
GGCGACGGCACGGGAGGGTCTTCGGACGGCGCCGATGCCCCCCCCGCGGA
GGGGAACGAGAAGGAGGCCCCGCCGGCGGGACTGGCAACGGCGGCGGCGG
CCGGGGCGGCCACGGCAGAGGCCACTACGGCGACGCCGGCGGAGGTTATG
GCGCCGCCCGCAGGGGGAGTGGTTGTGCCCGCTGCGGATCCCCCCGTGGA
GGTGAGCGCCGCTAGTCATACTGCGATGGACGTGGCAGGTTGAGTCGGGT
TAGTGAGGGACGCATCTCTGGCAGCAACGACGATGAAGACGGTTAACCCC
GCTCCCTTTGTGTTGAGTGGTTGTTCCGCTGATTGGGAAGGTGGGGGGGG
GGGTTTTGAGCCGCCGCTGTTGTTGCGTGCCTGCCTGTTGCTCTCGCGTG
GGGCTGATGAAGGTTGGCCGATGCCCGTAGAAATCGAAGCAATGGTGCTC
TTTTTCTGTGCGTCAGTCTACCAGTTGTGGCATCAAGCCCGTCTTGCCTC
GTCTTTTCCCGCCTCTATGTGTGGCATCCACCCGTCTAACGAATGCCGCT
CGTCCCCTCGCCCTGGCGCCTTGACGCTCAGGTCGGCACTGTCGAAGAAC
CCGACGCTGAAATGACGGACGTCGACACACCGGCCGCTCCAGCAACGGCA
GCACCGGCACCAGCAGCGCCGGCAGCAGCGCCGGCGGCGGGAGACTCGAT
ACCGTCCTCGTCATCAACCACCGCACCGGCGTCAACAGCTCCAGCGACAG
GTACCACGGCCACCCCGACGGGGGTCCCGGGAGGAGGCCAAGACACCGAC
GGAGACGCGGCCATGTCGGAGGCCGCGCCTGCCCCTGCACCCGCCCCTGC
CGCAGCCGCAGTCACGGCGGCTTCTGCAGTACCGGCGCCGGCAGCAGCAG
CAAACGAGGTCCCCGGGGCGGGCGTAACGGGAGGGGGGTTGGTGGCGGTG
CCGGCGCCCGGGGCGGCTGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10715:1973..2944-

>mRNA_H-canaliculatus_F_contig10715.684.1 ID=mRNA_H-canaliculatus_F_contig10715.684.1|Name=mRNA_H-canaliculatus_F_contig10715.684.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10715:1973..2944- (Hapterophycus canaliculatus Oshoro5f female)
GGCGACGGCACGGGAGGGTCTTCGGACGGCGCCGATGCCCCCCCCGCGGA
GGGGAACGAGAAGGAGGCCCCGCCGGCGGGACTGGCAACGGCGGCGGCGG
CCGGGGCGGCCACGGCAGAGGCCACTACGGCGACGCCGGCGGAGGTTATG
GCGCCGCCCGCAGGGGGAGTGGTTGTGCCCGCTGCGGATCCCCCCGTGGA
GGGCGACGGCACGGGAGGGTCTTCGGACGGCGCCGATGCCCCCCCCGCGG
AGGGGAACGAGAAGGAGGCCCCGCCGGCGGGACTGGCAACGGCGGCGGCG
GCCGGGGCGGCCACGGCAGAGGCCACTACGGCGACGCCGGCGGAGGTTAT
GGCGCCGCCCGCAGGGGGAGTGGTTGTGCCCGCTGCGGATCCCCCCGTGG
AGGTCGGCACTGTCGAAGAACCCGACGCTGAAATGACGGACGTCGACACA
CCGGCCGCTCCAGCAACGGCAGCACCGGCACCAGCAGCGCCGGCAGCAGC
GCCGGCGGCGGGAGACTCGATACCGTCCTCGTCATCAACCACCGCACCGG
CGTCAACAGCTCCAGCGACAGGTACCACGGCCACCCCGACGGGGGTCCCG
GGAGGAGGCCAAGACACCGACGGAGACGCGGCCATGTCGGAGGCCGCGCC
TGCCCCTGCACCCGCCCCTGCCGCAGCCGCAGTCACGGCGGCTTCTGCAG
TACCGGCGCCGGCAGCAGCAGCAAACGAGGTCCCCGGGGCGGGCGTAACG
GGAGGGGGGTTGGTGGCGGTGCCGGCGCCCGGGGCGGCTGCAGTCGGCAC
TGTCGAAGAACCCGACGCTGAAATGACGGACGTCGACACACCGGCCGCTC
CAGCAACGGCAGCACCGGCACCAGCAGCGCCGGCAGCAGCGCCGGCGGCG
GGAGACTCGATACCGTCCTCGTCATCAACCACCGCACCGGCGTCAACAGC
TCCAGCGACAGGTACCACGGCCACCCCGACGGGGGTCCCGGGAGGAGGCC
AAGACACCGACGGAGACGCGGCCATGTCGGAGGCCGCGCCTGCCCCTGCA
CCCGCCCCTGCCGCAGCCGCAGTCACGGCGGCTTCTGCAGTACCGGCGCC
GGCAGCAGCAGCAAACGAGGTCCCCGGGGCGGGCGTAACGGGAGGGGGGT
TGGTGGCGGTGCCGGCGCCCGGGGCGGCTGCA
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