mRNA_H-canaliculatus_F_contig10706.679.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10706.679.1
Unique NamemRNA_H-canaliculatus_F_contig10706.679.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: D7G4T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T8_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 9.380e-72
Identity = 156/297 (52.53%), Postives = 168/297 (56.57%), Query Frame = 1 
Query:    1 EQETNAALGRLSGIQCGAGHLKFGRPKAHAATFPMVPPQPFPASTLAGASAYATAIAVGGPAAEAAAQSXXXXXXXXXXXXGFQALTGVALPGGVGGDPSAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTVTAKKAESNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKVK 891
            E+ETNA LGR+SGIQCG GHLKFGRPKAHAA                     ATA+A                                                                                       KK ES+VLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEY+D EN QLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKV+         +D  D+ EP+ V+RLSNMVEVEEL DD EYAEIK DVV+EC+QYGKVK
Sbjct:  806 EEETNATLGRMSGIQCGTGHLKFGRPKAHAAG--------------------ATAVA--------------------------------------------------------------------------------------PKKEESSVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYTDMENGQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVKEV-------EDEQDNVEPTCVVRLSNMVEVEELADDTEYAEIKGDVVEECEQYGKVK 989
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A836CGC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.490e-34
Identity = 80/155 (51.61%), Postives = 106/155 (68.39%), Query Frame = 1 
Query:  433 KKAESNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAE--DDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKVK 891
            K+ +SNV+M+MNLP +LT + V+EL+ PFGE  +FNLL DS GKSKGTAV EY+++E + +A+ GL  LPV   KLM QRVP  +A TLL+  +++A    P  E  DDG      S V+ L NMV + +LEDD EY +I  DV DEC Q+G+VK
Sbjct:  639 KQPDSNVVMIMNLPKALTAEQVQELVEPFGEFTRFNLLVDSYGKSKGTAVCEYTESEAADVAMKGLDNLPVADCKLMAQRVPKGVAETLLRKTEIKAPEPTPYPEVPDDGT-----SRVVCLHNMVLISDLEDDVEYGDIVNDVRDECGQFGQVK 788
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A7R9Y9W2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9W2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.270e-27
Identity = 71/147 (48.30%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:  448 NVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKV 888
            NVLMVMNLP +  +D ++ELL+PFGEL+ F LL D+ G SKGTA+FEY +      A++GL+GLP+G+ KL+ Q +   MAATLL P+           E         S V+RLSNM   E L D  EY +IK DV +EC  YGKV
Sbjct:  426 NVLMVMNLPLAADEDDLKELLTPFGELRAFKLLLDAEGNSKGTALFEYREAAVGLAAINGLNGLPLGEVKLVAQELAPTMAATLLAPM----------IEKKPSSGNYSSQVVRLSNMATRELLADPQEYQDIKEDVEEECGNYGKV 562
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A812YL79_SYMMI (U2af50 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YL79_SYMMI)

HSP 1 Score: 114 bits (284), Expect = 1.430e-26
Identity = 74/162 (45.68%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:  457 MVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKG-TAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKP----------------VKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKVK 891
            MV NLP S+ +  VRELL PFGE++ FN +K ++G S G  AV EY D   +  A+ GL+GL +G  KL VQRVPA MAA LL P                V   +A S P    D L +  P+ V+RLSNM  +E+L+DD  Y E++ DV DEC  YG VK
Sbjct:    1 MVSNLPLSIGEAEVRELLEPFGEIQAFNFIKVNAGSSSGGAAVLEYVDKTLTDEAVKGLNGLQLGGSKLSVQRVPAQMAAMLLVPPTPSSSGAGGTGVGSVVSAGSAASSP----DPLLTHPPTCVLRLSNMTTMEDLQDDDAYDELQEDVGDECNNYGTVK 158
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A0W8C5W0_PHYNI (Splicing factor U2AF 50 kDa subunit n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C5W0_PHYNI)

HSP 1 Score: 111 bits (277), Expect = 1.840e-24
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 1 
Query:  427 TAKKAESNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSS-GKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKV 888
            TA+    + L++ N+P  LT+D V+EL+ PFG+LK F L+KD++ G S G+A+FEY D + +  A+ GL+GL +G   L VQR P   AA         AAV+P   ED      EPS V++++NMV ++EL DD EYA++  DV +EC+++G V
Sbjct:  177 TAEAGSGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAAL------PSAAVTP---ED------EPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSV 316
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A1V9YMP3_9STRA (Splicing factor U2af large subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMP3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.040e-24
Identity = 64/149 (42.95%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:  445 SNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKVK 891
            SN L++ N+P  L +D V +LL PFGEL +F L+KD++G S G+A+FEY+D   +Q AL GL+GL +    L+VQR P         P       +PP A         P+ VI+L NMV+  ELEDD+E+A++K D+ +EC ++GKV+
Sbjct:  329 SNRLLMANIPTVLKEDQVAQLLEPFGELSRFLLVKDNAGTSTGSALFEYTDESVTQSALDGLNGLEIAGSALLVQRAPRHGTIPEYNPN------APPEAT--------PTPVIQLGNMVQESELEDDSEFADLKLDIDEECNKFGKVE 463
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A329SMH5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SMH5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.220e-23
Identity = 65/156 (41.67%), Postives = 100/156 (64.10%), Query Frame = 1 
Query:  424 VTAKKAESNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSS-GKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKV 888
            V A+    + L++ N+P  LT++ V+EL+ PFG+LK F L+KD++ G S G A+FEY D++ +  A+ GL+GL +G   L VQR P    A +  P    AAV+P   ED      +PS V++++NMV ++EL DD EYA++  DV +EC+++G V
Sbjct:  302 VAAEAGSGHRLVMSNIPVVLTEEQVKELVEPFGKLKSFTLVKDTATGASLGNALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPPSSGAAVALP---SAAVNP---ED------QPSPVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSV 445
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: D0MUA2_PHYIT (Splicing factor U2af large subunit, putative n=12 Tax=Phytophthora TaxID=4783 RepID=D0MUA2_PHYIT)

HSP 1 Score: 109 bits (272), Expect = 4.450e-23
Identity = 65/151 (43.05%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:  439 AESNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSS-GKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKV 888
            +  N L++ N+P  L ++ V+EL+ PFG+LK F L+KDS+ G S G+A+FEY D++ +  A+ GL+GL +G   L VQR PA  AA L       AA +P   ED      +PS V++++NMV ++EL DD EYA++  DV +EC+++G V
Sbjct:  397 SSGNRLIMSNIPVVLAEEQVKELVEPFGKLKSFTLVKDSATGASLGSALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPASSAAALPS----AAAANP---ED------QPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGGV 534
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A6G0WM79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM79_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.710e-23
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:  445 SNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKV 888
            SN L++ N+P  LT++ V +L+ PFG L  F L+K++ G+S G+A+FEY D   ++ A++GL+GL +G   ++VQR           P K          E+   +  +P+ VI+L NMV+  ELEDD E+A++K D+ +EC ++GKV
Sbjct:  166 SNRLLMANIPTVLTEEQVAQLVEPFGTLAAFTLVKNAEGESVGSALFEYEDDSVTEAAMNGLNGLDLGGHVVVVQRASKQGTLPKYNPNKK--------VEEKAEEEEKPTPVIQLGNMVQASELEDDDEFADLKEDIEEECNKFGKV 305
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BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Match: A0A485KWN6_9STRA (Aste57867_12612 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWN6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.300e-22
Identity = 59/148 (39.86%), Postives = 93/148 (62.84%), Query Frame = 1 
Query:  445 SNVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDTENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAEDDGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKV 888
            SN L++ N+P  LT++ V +L+ PFG L  F L+K++ G+S G+A+FEY D   ++ A++GL+GL +G  +++VQR           P K         AE+D     +P+ VI+L NMV+  ELEDD E+A++K D+ +EC ++GKV
Sbjct:  347 SNRLLMANIPTVLTEEQVAQLVEPFGTLAAFTLVKNAMGESVGSALFEYEDDNVTEAAMNGLNGLDLGGQEVVVQRASKQGTLPKYNPNKQ--------AEEDA--KPKPTVVIQLGNMVQASELEDDEEFADLKEDIEEECNKFGKV 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10706.679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4T8_ECTSI9.380e-7252.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGC8_9STRA2.490e-3451.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Y9W2_9STRA2.270e-2748.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812YL79_SYMMI1.430e-2645.68U2af50 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A0W8C5W0_PHYNI1.840e-2443.23Splicing factor U2AF 50 kDa subunit n=1 Tax=Phytop... [more]
A0A1V9YMP3_9STRA2.040e-2442.95Splicing factor U2af large subunit n=1 Tax=Achlya ... [more]
A0A329SMH5_9STRA1.220e-2341.67Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0MUA2_PHYIT4.450e-2343.05Splicing factor U2af large subunit, putative n=12 ... [more]
A0A6G0WM79_9STRA7.710e-2338.51Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KWN6_9STRA1.300e-2239.86Aste57867_12612 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10706contigH-canaliculatus_F_contig10706:194..4115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.5
Seed ortholog evalue4.8e-64
Seed eggNOG ortholog2880.D7G4T8
Preferred namePELP1
KEGG koko:K12837,ko:K14572,ko:K16913
KEGG Pathwayko03008,ko03040,map03008,map03040
GOsGO:0000027,GO:0000243,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030628,GO:0030684,GO:0030687,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033119,GO:0033120,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0046872,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071004,GO:0071010,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089701,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1903312,GO:1903320,GO:1903321,GO:1990904
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG0120@1,KOG0120@2759,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-20_000390.1
Exons7
Model size894
Cds size894
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928733.3974636-CDS-H-canaliculatus_F_contig10706:193..2741622928733.3974636-CDS-H-canaliculatus_F_contig10706:193..274Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 194..274 -
1696845543.338004-CDS-H-canaliculatus_F_contig10706:193..2741696845543.338004-CDS-H-canaliculatus_F_contig10706:193..274Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 194..274 -
1622928733.415461-CDS-H-canaliculatus_F_contig10706:423..5101622928733.415461-CDS-H-canaliculatus_F_contig10706:423..510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 424..510 -
1696845543.3513064-CDS-H-canaliculatus_F_contig10706:423..5101696845543.3513064-CDS-H-canaliculatus_F_contig10706:423..510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 424..510 -
1622928733.4288783-CDS-H-canaliculatus_F_contig10706:844..10211622928733.4288783-CDS-H-canaliculatus_F_contig10706:844..1021Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 845..1021 -
1696845543.3648863-CDS-H-canaliculatus_F_contig10706:844..10211696845543.3648863-CDS-H-canaliculatus_F_contig10706:844..1021Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 845..1021 -
1622928733.439532-CDS-H-canaliculatus_F_contig10706:1894..20321622928733.439532-CDS-H-canaliculatus_F_contig10706:1894..2032Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 1895..2032 -
1696845543.374102-CDS-H-canaliculatus_F_contig10706:1894..20321696845543.374102-CDS-H-canaliculatus_F_contig10706:1894..2032Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 1895..2032 -
1622928733.4506896-CDS-H-canaliculatus_F_contig10706:2686..28351622928733.4506896-CDS-H-canaliculatus_F_contig10706:2686..2835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 2687..2835 -
1696845543.3823278-CDS-H-canaliculatus_F_contig10706:2686..28351696845543.3823278-CDS-H-canaliculatus_F_contig10706:2686..2835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 2687..2835 -
1622928733.4669113-CDS-H-canaliculatus_F_contig10706:3504..36731622928733.4669113-CDS-H-canaliculatus_F_contig10706:3504..3673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 3505..3673 -
1696845543.3905654-CDS-H-canaliculatus_F_contig10706:3504..36731696845543.3905654-CDS-H-canaliculatus_F_contig10706:3504..3673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 3505..3673 -
1622928733.4800231-CDS-H-canaliculatus_F_contig10706:4022..41151622928733.4800231-CDS-H-canaliculatus_F_contig10706:4022..4115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 4023..4115 -
1696845543.399546-CDS-H-canaliculatus_F_contig10706:4022..41151696845543.399546-CDS-H-canaliculatus_F_contig10706:4022..4115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10706 4023..4115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10706.679.1prot_H-canaliculatus_F_contig10706.679.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10706 194..4115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10706.679.1

>prot_H-canaliculatus_F_contig10706.679.1 ID=prot_H-canaliculatus_F_contig10706.679.1|Name=mRNA_H-canaliculatus_F_contig10706.679.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=298bp
EQETNAALGRLSGIQCGAGHLKFGRPKAHAATFPMVPPQPFPASTLAGAS
AYATAIAVGGPAAEAAAQSAAAAAEQAVAAAGFQALTGVALPGGVGGDPS
AAARAAAAVATAGIVGGSGAPGAAAAAAAAAAAVGASGGSTVTAKKAESN
VLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYSDT
ENSQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVRAAVSPPPAED
DGLDSTEPSTVIRLSNMVEVEELEDDAEYAEIKADVVDECQQYGKVK*
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mRNA from alignment at H-canaliculatus_F_contig10706:194..4115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10706.679.1 ID=mRNA_H-canaliculatus_F_contig10706.679.1|Name=mRNA_H-canaliculatus_F_contig10706.679.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3922bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10706:194..4115- (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGGAGACCAACGCGGCTCTAGGCCGGTTGTCGGGGATCCAGTGCGG
GGCCGGCCACCTCAAGTTCGGGCGGCCCAAGGCTCACGCGGCGGTAAGAT
GATTCCATTTCGACTCTCCCCTTTCCCGGCATGAACTGGTTTAAAACAAG
AGGTAGATGATCATGGATTCGAAAGATCGCGGGGTTAGACGGGTCTAGAC
CTGAACCAGGTCGCACATGTCTAAAATCATGAGCACAATGTCAAGCGGGC
AACAGAAACTGCTGTGCTGGTGAGGCATCAGAGAGACCTGGTCGGACATG
AATCGCGTGATTGGTCCTTGCTTATCATGTTTTCCCCTGCGTGTGAATCT
TGTCTCGATGCATCCGTTCGCCCGCCTTGTACAGGCACCGTTCTCCCACC
CTCACCCTCGACTCCCCCCCCCCGCGCGCCCCATTTTTTTAGACCTTCCC
GATGGTACCTCCCCAGCCGTTCCCCGCCTCCACCCTCGCCGGAGCATCGG
CGTACGCCACCGCTATCGCTGTCGGAGGGCCGGCGGCGGAAGCGGCGGCG
CAATCGGCGGCGGCGGCAGCCGAGCAGGCGGTTGCTGCGGCGGGTTTCCA
GGCCCTGACAGGTGGCCGGGCGGGCATTGCGGAGGAGGGGAGAGTAAACA
TGACGTCCGGTAGCGGGGTGATTGGGTGGTTCGTTTATGCGGTTGATGGC
GGCGTCTTCAGAGTCTGTCAAACTAGTTTTAAGTCTGGGCCTTCCACGGC
TTTTTGGGTTTCGCGTCCATCGGAGTGGCGGCGATGTCGAGGGTGGTCTT
ACTCATCACCTAGACACCCCGGCCTTGGTCTCGCTTTGGCTCGACGGCCA
TGTCGGCGAAGGCGGCGGAAAAGCCCGGGACGAAATTTGGGTAATTTGTA
ATTTTGCGACCCGCGGAAGACGAGGGCAACCAGGGGCTCGTGTCAATCGT
GCCACGCTTTTGAAACTCAAATACATCGATTACGTAGCAGCCCGAAATCT
CGAGCTTGCCTTTTCGAGGACTATCGGTTGTCCGGAAAATTGGACCCAAC
CGGCTCACCGAAAGATGTCGTCGTTTGCCACGGGCCCCCGTAAATTGCGC
CGGTAAATGTCCCGAATGTAGCCCCCCTCGTCCTCCTCTCCCCTTTCATG
CGAAAGACTTTTCGGCCACAAGACTTTTCGGCCACCGTATCTTCTGTACA
GCACGTGCTCCGAACTCACATCCCGCCGGCTCCGTTACTGACGGGAACAC
GCACCGCAAACAATCGTTCGGACTCGGTAGGGGTGGCTCTCCCCGGAGGC
GTCGGTGGGGATCCCTCCGCGGCCGCGAGGGCGGCCGCGGCGGTGGCGAC
GGCGGGAATCGTGGGGGGCAGCGGGGCACCCGGGGCGGCGGCGGCTGCCG
CGGCCGCCGCTGCGGCGGTGGGGGCGTCGGTGAGTGTGTCGCAGACGATC
GCGGTCGTTGTAGCCGGCGGCGGCGGCGGCGGCGGCGCCTTGTTGATTCT
TGTAGATATTGCCGGCCCGGACGCGGGCGGACAGCGATCGGCCAGGGTGT
TTGTAGTGGGCGTTGGCGTTTTTTGTTGTGGCGGTTTCGTTCCGGTGGTG
TTGGTGATGTCGGTGGTGTCGGTGGTATCGGGGGTGATGGCGGCTGGGGG
CATGACCCCCGTAATTTCCTTCTTGTTTTCGTTTCGTCCGATCGCGGCAG
TACGCCAGCACGGCAGAGTTGTTCCCAAAAATCGTCGCTGCTTGACCAGT
GATGCCGCAGGCGAAGAAACGGGGGGGGGAGGGAGGTGACCGCCTCGCGG
AGCTTTTGCAGCTACATGTATTCGCCAGGCTGGATGGCGAATCGTTTGCG
CCGTTGTGCCCCGTTCATTCCTGATTTCCCTTCCTTCTCTAGTCCCGCAC
GTTGAACACCGTCTCCAAAACGAAGAGGGGCACTTGGAAGTAAAAACGTA
AGCAACCAGAGACCGCCTGGTTGGGGTTCCTTCATGGTTGCTACGGGTGT
TTTTCGGTCGTTGGCTGACTCGCTCTTAATAATCTGCCTGCCCCTTGCGG
ACTTGACTTAATAAAAAACAACGACGACCACAGGGCGGCTCGACGGTGAC
CGCCAAGAAGGCCGAGAGCAACGTTCTCATGGTGATGAACCTGCCCGATT
CTCTCACGGACGACCATGTGCGGGAGCTGCTGAGCCCCTTCGGGGAGCTC
AAGAAGTTCAACCTTCTCAAGGTGTGTGGTGTGTGCTACATTTTTTGACA
GAAAGAGTCAACGACAACAACACGAAAGGAATACAAGCACCCGCCGCTGA
GCCAAATAAAATTAGTAGCGACTCAGGAGCATTTTTGTTGAATTCCTTTT
AGTGAGGGTATATTGCTACGTATGTCTGTGTGTCTGTGTGTCTGTGTGTC
TGTGTGTTTTAATTTTTCCGGTACAGGTGGAGTCGCCGCATGCGTGTTTT
TGCCTTTTCGTTGCAGGGTAAGTAAGGACAGGATGAGCAGCGAGATCCCT
GAACGAGAGGCGACGTCGGTGCGGTCAGCTCTTTTTCGCGCGTCCGCAGC
GCGTGTTAGTTTGGTTTGCCGCTCGCCACGCTCCAACGAATCAGGCAGCA
GCACGAACGAAGCTATGATACATCCCCCCTTACCTAGCCTTGCCAACCGT
CGGCGGCCGCGAGGCATGAAAGGAAGCAACCGTCTCTCGCGAACACCGTC
GTGTACATTTCCGCTAGTGTGTGGGATGGAGGGTCGCTCCCATGTAAATA
TGTTACTCACAAGCTCTGGACACACTCAAGCTCCGTGTTGTGCGCTGATT
ATGCTTCCCCATTCTTAACTCGCGTAAGATTGTGAGCGCTCTTGCACGAA
AAAAGTCGGAATATCACGGGATTTTACTGTCTTGCGTGCCTTTCAACATA
CCTGGCGGTCCACGATAGAAAGCCGGCAGTCCAAGACGAGTACCTGTGTA
TTTGGGTCGTGCATGTTGATTCCTGTTCTCAGAATTCTCCCGGCAAGCCT
TGTGCAGGACATGGGGCTCATTCGAGAACCAGAGGTTTGGGGAGGACGTT
CTGCGTTTTCACTGTTTGCTCTCGCCTCCTGCCTGTCGTCGCAGGACTCC
TCTGGCAAGTCGAAGGGCACCGCCGTGTTCGAGTACTCGGACACGGAGAA
CAGCCAGCTTGCGCTGAGCGGCCTCTCGGGGCTGCCCGTGGGCAAGGGAA
AGCTGATGGTGCAGAGAGTGCCCGCGATGATGGCCGCTACGCTCCTCAAG
CCCGTCAAGGTGCGCGCTGCTGTTTGCGGCGTTTGTGGCGTGGTTGCTCG
TATGATACCTGGTGCGAGTTATGGTTATGGCTTCCTGGCGTCGCGCCCCA
ACAAAAAATCGTCCGCTCTTCCCTCGCGCACGATACTGTTGCCGCACAGA
AGCAGCGGCCGTACCGTCCCTCTCGCTGCCCCCCTTGATCCTTGTAGTCT
TATGGTCATGTTTTCCTTGTAGTGTTCCTTGTATATATTTTTTCATCACT
TATTTTTTTCCGGTTCCTTTCGCGGTGTGTTTGTAGATGGGCGTTTTTTT
TCCCCTTTTTTTTACCACCTCTTTCCCGATCCTCCTCGCGGCGTTTGTCT
GTAAGGTGAGCCCCCCGCCGGCGGAAGACGACGGCCTGGACAGCACCGAG
CCGTCCACCGTCATCCGCCTTTCCAACATGGTCGAAGTCGAGGTACGTCC
TCGGCGCTGTGGAAAAAAAAAAACTGTTCGCAGCGTAGGATTTTGACTAT
AATAGTGCACTCCGATGAAGGCTGCCAGAATCTTGTCAAAACTCACGCGC
GAATTTTCCTCACTTTCCACGACTCGTTGTCGCCCCACCAGGAACTCGAG
GACGACGCCGAATACGCGGAGATCAAGGCAGACGTGGTGGACGAGTGCCA
GCAGTACGGGAAGGTCAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10706:194..4115-

>mRNA_H-canaliculatus_F_contig10706.679.1 ID=mRNA_H-canaliculatus_F_contig10706.679.1|Name=mRNA_H-canaliculatus_F_contig10706.679.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10706:194..4115- (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGGAGACCAACGCGGCTCTAGGCCGGTTGTCGGGGATCCAGTGCGG
GGCCGGCCACCTCAAGTTCGGGCGGCCCAAGGCTCACGCGGCGGAGCAGG
AGACCAACGCGGCTCTAGGCCGGTTGTCGGGGATCCAGTGCGGGGCCGGC
CACCTCAAGTTCGGGCGGCCCAAGGCTCACGCGGCGACCTTCCCGATGGT
ACCTCCCCAGCCGTTCCCCGCCTCCACCCTCGCCGGAGCATCGGCGTACG
CCACCGCTATCGCTGTCGGAGGGCCGGCGGCGGAAGCGGCGGCGCAATCG
GCGGCGGCGGCAGCCGAGCAGGCGGTTGCTGCGGCGGGTTTCCAGGCCCT
GACAGACCTTCCCGATGGTACCTCCCCAGCCGTTCCCCGCCTCCACCCTC
GCCGGAGCATCGGCGTACGCCACCGCTATCGCTGTCGGAGGGCCGGCGGC
GGAAGCGGCGGCGCAATCGGCGGCGGCGGCAGCCGAGCAGGCGGTTGCTG
CGGCGGGTTTCCAGGCCCTGACAGGGGTGGCTCTCCCCGGAGGCGTCGGT
GGGGATCCCTCCGCGGCCGCGAGGGCGGCCGCGGCGGTGGCGACGGCGGG
AATCGTGGGGGGCAGCGGGGCACCCGGGGCGGCGGCGGCTGCCGCGGCCG
CCGCTGCGGCGGTGGGGGCGTCGGGGTGGCTCTCCCCGGAGGCGTCGGTG
GGGATCCCTCCGCGGCCGCGAGGGCGGCCGCGGCGGTGGCGACGGCGGGA
ATCGTGGGGGGCAGCGGGGCACCCGGGGCGGCGGCGGCTGCCGCGGCCGC
CGCTGCGGCGGTGGGGGCGTCGGGCGGCTCGACGGTGACCGCCAAGAAGG
CCGAGAGCAACGTTCTCATGGTGATGAACCTGCCCGATTCTCTCACGGAC
GACCATGTGCGGGAGCTGCTGAGCCCCTTCGGGGAGCTCAAGAAGTTCAA
CCTTCTCAAGGGCGGCTCGACGGTGACCGCCAAGAAGGCCGAGAGCAACG
TTCTCATGGTGATGAACCTGCCCGATTCTCTCACGGACGACCATGTGCGG
GAGCTGCTGAGCCCCTTCGGGGAGCTCAAGAAGTTCAACCTTCTCAAGGA
CTCCTCTGGCAAGTCGAAGGGCACCGCCGTGTTCGAGTACTCGGACACGG
AGAACAGCCAGCTTGCGCTGAGCGGCCTCTCGGGGCTGCCCGTGGGCAAG
GGAAAGCTGATGGTGCAGAGAGTGCCCGCGATGATGGCCGCTACGCTCCT
CAAGCCCGTCAAGGTGCGCGCTGCTGACTCCTCTGGCAAGTCGAAGGGCA
CCGCCGTGTTCGAGTACTCGGACACGGAGAACAGCCAGCTTGCGCTGAGC
GGCCTCTCGGGGCTGCCCGTGGGCAAGGGAAAGCTGATGGTGCAGAGAGT
GCCCGCGATGATGGCCGCTACGCTCCTCAAGCCCGTCAAGGTGCGCGCTG
CTGTGAGCCCCCCGCCGGCGGAAGACGACGGCCTGGACAGCACCGAGCCG
TCCACCGTCATCCGCCTTTCCAACATGGTCGAAGTCGAGGTGAGCCCCCC
GCCGGCGGAAGACGACGGCCTGGACAGCACCGAGCCGTCCACCGTCATCC
GCCTTTCCAACATGGTCGAAGTCGAGGAACTCGAGGACGACGCCGAATAC
GCGGAGATCAAGGCAGACGTGGTGGACGAGTGCCAGCAGTACGGGAAGGT
CAAGTGAGAACTCGAGGACGACGCCGAATACGCGGAGATCAAGGCAGACG
TGGTGGACGAGTGCCAGCAGTACGGGAAGGTCAAGTGA
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