mRNA_H-canaliculatus_F_contig10702.676.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10702.676.1
Unique NamemRNA_H-canaliculatus_F_contig10702.676.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10702.676.1 vs. uniprot
Match: A0A6H5K295_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K295_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.830e-36
Identity = 74/105 (70.48%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 AC-VDQVGAEDIKTLVEDLDARVDLQDQDGWTCLHWAAQHGRADAARALFEALASIASEPDAAAAAVDDLRAVRDGEGKTADAVARAAGLEGSVLEGFLEALESG 312
            AC + QVG  DIK +VED DA+VDLQDQDGWTCLHWAAQ GR DAARA+FEAL SIASEP AAA  + DLRA+RD EGKTA  VAR AGL  S LE  L  LE G
Sbjct:  168 ACGLSQVGEGDIKAMVEDFDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEPAAAATMIQDLRAMRDAEGKTAADVARGAGLASSDLEEILGVLEDG 272
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BLAST of mRNA_H-canaliculatus_F_contig10702.676.1 vs. uniprot
Match: D8LIN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.310e-35
Identity = 74/105 (70.48%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 AC-VDQVGAEDIKTLVEDLDARVDLQDQDGWTCLHWAAQHGRADAARALFEALASIASEPDAAAAAVDDLRAVRDGEGKTADAVARAAGLEGSVLEGFLEALESG 312
            AC + QVG  DIK +VEDLDA+VDLQDQDGWTCLHWAAQ GR DAAR +FEAL SIASEP AAA  + DL A+RD EGKTA  VAR AGL  S LE FL  LE G
Sbjct:  281 ACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAARVIFEALGSIASEPTAAATMIQDLLAMRDAEGKTAADVARGAGLASSDLEEFLGVLEDG 385
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10702.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K295_9PHAE5.830e-3670.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIN5_ECTSI4.310e-3570.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10702contigH-canaliculatus_F_contig10702:126..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue9.1e-29
Seed eggNOG ortholog2880.D8LIN5
EggNOG free text desc.Phosphate transport (Pho88)
EggNOG OGs2CMQ9@1,2QRCY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928733.130173-CDS-H-canaliculatus_F_contig10702:125..4491622928733.130173-CDS-H-canaliculatus_F_contig10702:125..449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10702 126..449 +
1696845543.2305536-CDS-H-canaliculatus_F_contig10702:125..4491696845543.2305536-CDS-H-canaliculatus_F_contig10702:125..449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10702 126..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10702.676.1prot_H-canaliculatus_F_contig10702.676.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10702 126..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10702.676.1

>prot_H-canaliculatus_F_contig10702.676.1 ID=prot_H-canaliculatus_F_contig10702.676.1|Name=mRNA_H-canaliculatus_F_contig10702.676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
ACVDQVGAEDIKTLVEDLDARVDLQDQDGWTCLHWAAQHGRADAARALFE
ALASIASEPDAAAAAVDDLRAVRDGEGKTADAVARAAGLEGSVLEGFLEA
LESGGSS*
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mRNA from alignment at H-canaliculatus_F_contig10702:126..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10702.676.1 ID=mRNA_H-canaliculatus_F_contig10702.676.1|Name=mRNA_H-canaliculatus_F_contig10702.676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10702:126..449+ (Hapterophycus canaliculatus Oshoro5f female)
GCATGCGTCGACCAGGTGGGAGCGGAAGACATCAAGACGCTGGTGGAAGA
CCTTGACGCGCGGGTCGACCTGCAGGACCAGGACGGCTGGACGTGCCTCC
ACTGGGCCGCGCAGCACGGCCGCGCCGACGCCGCCCGAGCGCTCTTCGAG
GCCCTCGCGAGCATCGCTAGCGAACCGGACGCCGCCGCCGCCGCCGTCGA
CGACCTTCGGGCGGTCCGCGACGGGGAAGGGAAGACCGCGGACGCTGTGG
CGAGGGCGGCGGGGTTGGAAGGGTCGGTTTTGGAGGGGTTTCTCGAGGCT
TTGGAAAGCGGCGGGAGCTCGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10702:126..449+

>mRNA_H-canaliculatus_F_contig10702.676.1 ID=mRNA_H-canaliculatus_F_contig10702.676.1|Name=mRNA_H-canaliculatus_F_contig10702.676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10702:126..449+ (Hapterophycus canaliculatus Oshoro5f female)
GCATGCGTCGACCAGGTGGGAGCGGAAGACATCAAGACGCTGGTGGAAGA
CCTTGACGCGCGGGTCGACCTGCAGGACCAGGACGGCTGGACGTGCCTCC
ACTGGGCCGCGCAGCACGGCCGCGCCGACGCCGCCCGAGCGCTCTTCGAG
GCCCTCGCGAGCATCGCTAGCGAACCGGACGCCGCCGCCGCCGCCGTCGA
CGACCTTCGGGCGGTCCGCGACGGGGAAGGGAAGACCGCGGACGCTGTGG
CGAGGGCGGCGGGGTTGGAAGGGTCGGTTTTGGAGGGGTTTCTCGAGGCT
TTGGAAAGCGGCGGGAGCTCGTAGGCATGCGTCGACCAGGTGGGAGCGGA
AGACATCAAGACGCTGGTGGAAGACCTTGACGCGCGGGTCGACCTGCAGG
ACCAGGACGGCTGGACGTGCCTCCACTGGGCCGCGCAGCACGGCCGCGCC
GACGCCGCCCGAGCGCTCTTCGAGGCCCTCGCGAGCATCGCTAGCGAACC
GGACGCCGCCGCCGCCGCCGTCGACGACCTTCGGGCGGTCCGCGACGGGG
AAGGGAAGACCGCGGACGCTGTGGCGAGGGCGGCGGGGTTGGAAGGGTCG
GTTTTGGAGGGGTTTCTCGAGGCTTTGGAAAGCGGCGGGAGCTCGTAG
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