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Homology
BLAST of mRNA_H-canaliculatus_F_contig1070.674.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 6.160e-6 Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 3
Query: 72 AEFCLEHATDGMVDVVSRRCAHPDCSKQPSFGTKGQK 182
AEFC +H MV+VVS+RC HP C+KQPS+G G K
Sbjct: 22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
BLAST of mRNA_H-canaliculatus_F_contig1070.674.1 vs. uniprot
Match: D7FHY3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY3_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 2.180e-5 Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 3
Query: 69 KAEFCLEHATDGMVDVVSRRCAHPDCSKQPSFGTKGQK 182
KAEFC +H+ GM++VV++RC HP C KQPS+G G K
Sbjct: 50 KAEFCSKHSKPGMINVVNKRCGHPGCMKQPSYGNHGMK 87
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 2445 |
Cds size | 1431 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928732.5118575-UTR-H-canaliculatus_F_contig1070:18410..18466 | 1622928732.5118575-UTR-H-canaliculatus_F_contig1070:18410..18466 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1070 18411..18466 + |
1696845543.028315-UTR-H-canaliculatus_F_contig1070:18410..18466 | 1696845543.028315-UTR-H-canaliculatus_F_contig1070:18410..18466 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1070 18411..18466 + |
1622928732.665819-UTR-H-canaliculatus_F_contig1070:18991..19039 | 1622928732.665819-UTR-H-canaliculatus_F_contig1070:18991..19039 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1070 18992..19039 + |
1696845543.037313-UTR-H-canaliculatus_F_contig1070:18991..19039 | 1696845543.037313-UTR-H-canaliculatus_F_contig1070:18991..19039 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1070 18992..19039 + |
1622928732.7234333-UTR-H-canaliculatus_F_contig1070:21826..22736 | 1622928732.7234333-UTR-H-canaliculatus_F_contig1070:21826..22736 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1070 21827..22736 + |
1696845543.0661964-UTR-H-canaliculatus_F_contig1070:21826..22736 | 1696845543.0661964-UTR-H-canaliculatus_F_contig1070:21826..22736 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1070 21827..22736 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928732.6867692-CDS-H-canaliculatus_F_contig1070:19039..20315 | 1622928732.6867692-CDS-H-canaliculatus_F_contig1070:19039..20315 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1070 19040..20315 + |
1696845543.0464573-CDS-H-canaliculatus_F_contig1070:19039..20315 | 1696845543.0464573-CDS-H-canaliculatus_F_contig1070:19039..20315 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1070 19040..20315 + |
1622928732.7108157-CDS-H-canaliculatus_F_contig1070:21671..21826 | 1622928732.7108157-CDS-H-canaliculatus_F_contig1070:21671..21826 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1070 21672..21826 + |
1696845543.0550258-CDS-H-canaliculatus_F_contig1070:21671..21826 | 1696845543.0550258-CDS-H-canaliculatus_F_contig1070:21671..21826 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1070 21672..21826 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1070.674.1 >prot_H-canaliculatus_F_contig1070.674.1 ID=prot_H-canaliculatus_F_contig1070.674.1|Name=mRNA_H-canaliculatus_F_contig1070.674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=477bp
MVDVVSRRCAHPDCSKQPSFGTKGQKVEYCSGHATPGMVNVVTKRCAHPD CTKQPSFFVPGSTKVELCLTHAKDRTLRSKAGHAREESARFIVDQSQRGH ELDLESTAPIPSSRTDGKRKKPVGAAAQKARSPVRGSSSTAREFEPGHRA VVQPPPPPPPVRHRLAVVQQSPLPALRAVLAQGTSTTTSPATPPVPQRSH FLVHPELPEVDDDLAGKSLPAHCPHGVLSCALKSTEAGGTVERGWKPVFR PLESTVANGDLGEAARWMPVFESQQRRSRGGEVGGSSDDYRAVAVPQGFE LETTREGIIRVQGSGAVGDPRRGAFVPGAIGRSAWRPAFGTPGSLDIAGG EHEAGGNRGPEAMGTTGNQEEEHCPYETFQQFKARRSRRSSSTSGNSGGG SMREKNGGRAHEGLFDPSGCGAECSGGIKVKQDILRQLQEDEWLQQQQQQ QQQMKYRPRPYEVHETSKRFRPTEQY* back to topmRNA from alignment at H-canaliculatus_F_contig1070:18411..22736+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1070.674.1 ID=mRNA_H-canaliculatus_F_contig1070.674.1|Name=mRNA_H-canaliculatus_F_contig1070.674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1070:18411..22736+ (Hapterophycus canaliculatus Oshoro5f female) ACGCAAGGCACGACAACAACACTACCACATGAGCAATATCCAGCCAAGAT
CGTAAGGTACTGGAGATACTCTTGACATTGGTTGAGCGCGAGAAGCTGTT
CGAGCAAATCGTAGATAGTTTGGCGAACAAACCGGAACAAAACGGGCCAC
CCGTCGTCGTCGAACTCGACAAGTACGAAGGAAGATTGTGGAAGATGACC
AGGCAGTGCAAGCACCAGGCGTGCACGACGAGAGCATCGTTCGGCGTTTC
TGGCTCTCCTCCAGAGTTCTGCGCCCAGCACTGTTTGACTGGAATGATAG
ATGTGCGCAGGAAAAGATGCCGGGCTACGCACAACTGCTGTTCCAGAGTT
GCAACCTATGGTTACAATACTGCCGAGTTCTGTGCGGAGCATGCGAAGGA
CGATATGGTGAACATCCGCCACAAGACGTGCGCGCAGCATGACTGCACCA
CGCGACCCTCGTTTGCTGAGCCTGGTGACAGAGCCAAATTCTGCTCAAAG
CATGCTCGGGTTGGTATGGTCAATGTCTGCAGCAAGAGCTGCGCTCACCA
AGGCTGCACTGTGCGGCCGTCTTTCGGTCAGGTCGGGTCAACAAAGGCCG
AGTTCTGCCTGGAGCACGCAACCGATGGGATGGTTGACGTCGTGAGTAGG
AGGTGCGCCCACCCAGACTGTTCCAAACAGCCTTCCTTTGGAACGAAAGG
CCAGAAGGTAGAATACTGCAGCGGGCACGCGACGCCAGGGATGGTGAATG
TGGTCACCAAGCGGTGTGCCCACCCAGACTGCACCAAGCAGCCGTCGTTT
TTCGTCCCCGGCAGCACGAAGGTGGAATTGTGCTTGACGCATGCCAAGGA
CAGGACGCTGCGTTCGAAGGCAGGACACGCCCGTGAGGAGAGTGCTAGGT
TTATTGTTGATCAGAGCCAACGTGGACATGAGCTCGACTTGGAATCCACC
GCACCAATCCCTTCGAGCCGAACAGATGGGAAGCGGAAGAAACCTGTCGG
AGCAGCGGCACAAAAAGCCCGATCACCGGTGAGGGGCTCGTCCAGCACAG
CACGCGAGTTCGAGCCCGGGCATCGGGCGGTCGTACAGCCGCCGCCGCCG
CCGCCGCCAGTGAGACATAGATTAGCGGTTGTGCAGCAGTCGCCGTTGCC
GGCATTGCGAGCCGTGCTTGCGCAGGGAACGTCGACCACCACGAGCCCGG
CCACACCACCGGTACCGCAACGATCACACTTTCTCGTGCACCCAGAACTA
CCAGAGGTGGACGACGACCTGGCGGGGAAAAGTCTCCCCGCTCATTGTCC
CCATGGAGTCCTGTCGTGCGCGTTGAAGAGCACAGAGGCCGGCGGCACGG
TCGAGCGCGGCTGGAAACCAGTGTTCAGGCCTCTGGAGAGCACCGTTGCC
AACGGCGATCTGGGCGAGGCAGCGCGTTGGATGCCGGTGTTTGAATCTCA
ACAAAGACGAAGCCGCGGAGGAGAAGTTGGGGGCAGCAGCGACGATTACA
GGGCTGTTGCGGTACCCCAAGGCTTCGAGCTCGAGACCACGAGGGAAGGT
ATCATCAGAGTCCAGGGCTCAGGAGCCGTGGGTGACCCCCGCCGCGGAGC
CTTCGTGCCTGGAGCCATAGGGAGGAGCGCGTGGAGGCCCGCGTTCGGGA
CCCCGGGCAGCCTCGACATCGCAGGCGGTGAGCACGAAGCCGGCGGAAAT
CGTGGACCCGAAGCGATGGGGACCACCGGCAACCAGGAGGAGGAACATTG
TCCGTACGAGACGTTCCAGCAATTCAAAGCCAGGAGAAGCAGACGCAGCA
GTAGCACCAGTGGCAATAGCGGCGGGGGTAGCATGCGCGAGAAGAACGGT
GGGCGCGCGCACGAAGGCTTATTTGATCCGTCGGGCTGTGGAGCGGAATG
TTCAGGTATATATATATACATGCGTAGATTGGTTGCAATGGTCGATGATC
TGGACGAAGTACGCACAAAAATCTACTTTGATGTATTCCTCGTCCCGTCC
CAACGCGCTGCAGAATTGATTTTGGCATTGGATTCATTCGTTCCAACTGG
CTGAAAAATGTCCTGAGATAGTGTATTATAGGATATCATAGGTGGGTGTT
TATTGCGATTGTGTGACAGGTAGGTCCTTCATTGAAAAACATGTTTTCGT
GTGGTCGCCTGTGCGCTGTCCTCTCTCTTCTTGTTGCTCGAAGCTGACCG
GCTGCACCAACTTACTTCCCGATTGCTGCAGCCACCCTTCCTCATAATAG
ACACTGAACGATGCGCTCCGTTGGTGCAACACTCCACCAGAGCGGAAGTT
AGTGTCGAAGGCCCGCCGCGGGAGCAAACGAGCACGGAGGGTTCAGGTCG
ATCCGTAAGAAGCACCTACAAGTACTTCAGCATAACATACATACACCCAA
CCTCACGCCCACTCCAAACTAAACCCAACTTCATTACAACAACAACCTGC
TTCCACGCGATCCCTTTCCCTGGGCGCTATTTTTACCCCCCAAGCAAGAC
GAGAATGCCCCCGGACCCACCTCCGGCGTTCGTTCGCAGAGAGTAGGGCT
ACTGAATGGTTGAAGACGGCCAAAACTTTCTTCGCAGTTGATGTGCTGGA
CGCCACATGCTGCCCACGCGCGAGGGCTAGGCAGCAGTTTGGTTGTTCAT
GCGGCGGGGGTTGCAGCTCGCAAGCATCTGAGGTGTCAAATGCTGCCGCA
GCCACCGTCCATCTTTCTTCGTTATTTTCGTTGTTGATTTAATGGTGTTG
TCCTTGCTTCGTATTTTGTGGTGGTAGTGGGTAATGATGGTGTTGTCTAT
CTTCGGCTATGGAGAACATTAGTGTTCTCATCACCAAATTATGCATCTAC
GTGCCTTCGACGTGCTTTTCCCGTCACCCGTGCAAGTACGAAGCCACATC
GCGAAAAGAGATCGGCTGCGTGGTCGCACGCTGACCAAATGAAGCACAAG
GAAAACGAGGAGTTAATCATGCACCTTCGCGAAGTCCATCCGACGTGAGA
ATTCTTATGTTCACCAAACAAAATATCATATTCTTGTCCCAACAGTATAC
ATTGAAACCTCATTGTTTGGAGGTCAACAGAAACCTCGAGCTACATCTCG
CACGACGTACGTTAGGAGGTGTTCCTACGGTGTTGTTATGTATTTCGTCA
AGCTGTTCACACGACGCGTATTTCACTGTCCTTCTCCCCCCCCTTTCTTC
TTTCTTTTCTTCCTCCCGTCGCTGCTCGTCGTGTCGAATGACGAACTGCT
TTCAAACGTAGGCGGAATCAAGGTAAAACAAGATATACTACGTCAGCTAC
AAGAAGATGAATGGCTCCAGCAGCAGCAGCAGCAGCAGCAGCAGATGAAG
TACCGGCCGCGGCCCTACGAAGTGCACGAGACGTCGAAGAGGTTCCGTCC
GACAGAGCAATATTGATTACCGACGGTGGTGTTCCTGTTGCAGTGTTTGA
TGGATCGATAATGCAGGTCTCATCAGTTTTTTCTCTTATTTGACCTTGAC
AGTATTTGCAACTGTTCTTGACTTTTAAACTCTGCTGTCTCAATGTGTCA
ACAGCTAACATTTACGTGCGATTCCGCCGTCTTTCAACTAGATATTTACA
CTACAAGTGTTTCAATTAGACAATATATGCACGCGCCTCGGGTACAACAC
CTCTTGCATTGTGGAACTTACCCACCTAGCCAGCTAGGAGCGTTTAGGGT
TTTGCCAGCAAAGGGAGCAGTAACTGCAACTGATGCCGTGTGTGCCACGA
CCGGCGGCGTTGTTTTAGGCGTTAATGGTGGCTCGCCGCACAACAGGATA
GAGAGTGATTCATGTGACACCTCCGGGACTCCGTAACATTTCACCAGTTG
GTTTCCTGCTGTTGATGTTATGTTGCCATTGTTATTGTTGATGGTGGTGG
TGTTCATGGCGGTGATGATGTTACCGTTGGCGTTGTCGTTTTCGTTGCCG
TTGGAGAAGAAGAAAAGAACAAACATGTCAGTAGCTTTTGTTGTGGTCGT
AATTGTCGTTGATATCGTTGATGTTAACGTTGGTGATATTGTTTTCGTCG
TTATTGGCATGTACTCCGTACCATATTTTTTCTGTTGCCATCGTGCCTGT
TGCCGATGCCATTGTCAGGGTCGCCGCCCTCTAATTTTTCAACGTTGATC
TTGGCTGAGCAAAATTCCATGCGCTTTCCCCAGCTTTTTCCCGACATTCG
CGGCACAGCGATCCATTATGTTCTTATCTTTCAGGGATAGCAGGTGACGG
CAAGATACCACGCATGTTTTGGTTCCCGGAGTGGCGATCTTCAACCCAGT
AAGGTTAGCAAAGTTCGCGACGTTAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1070:18411..22736+ >mRNA_H-canaliculatus_F_contig1070.674.1 ID=mRNA_H-canaliculatus_F_contig1070.674.1|Name=mRNA_H-canaliculatus_F_contig1070.674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2862bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1070:18411..22736+ (Hapterophycus canaliculatus Oshoro5f female) ATGGTTGACGTCGTGAGTAGGAGGTGCGCCCACCCAGACTGTTCCAAACA GCCTTCCTTTGGAACGAAAGGCCAGAAGGTAGAATACTGCAGCGGGCACG CGACGCCAGGGATGGTGAATGTGGTCACCAAGCGGTGTGCCCACCCAGAC TGCACCAAGCAGCCGTCGTTTTTCGTCCCCGGCAGCACGAAGGTGGAATT GTGCTTGACGCATGCCAAGGACAGGACGCTGCGTTCGAAGGCAGGACACG CCCGTGAGGAGAGTGCTAGGTTTATTGTTGATCAGAGCCAACGTGGACAT GAGCTCGACTTGGAATCCACCGCACCAATCCCTTCGAGCCGAACAGATGG GAAGCGGAAGAAACCTGTCGGAGCAGCGGCACAAAAAGCCCGATCACCGG TGAGGGGCTCGTCCAGCACAGCACGCGAGTTCGAGCCCGGGCATCGGGCG GTCGTACAGCCGCCGCCGCCGCCGCCGCCAGTGAGACATAGATTAGCGGT TGTGCAGCAGTCGCCGTTGCCGGCATTGCGAGCCGTGCTTGCGCAGGGAA CGTCGACCACCACGAGCCCGGCCACACCACCGGTACCGCAACGATCACAC TTTCTCGTGCACCCAGAACTACCAGAGGTGGACGACGACCTGGCGGGGAA AAGTCTCCCCGCTCATTGTCCCCATGGAGTCCTGTCGTGCGCGTTGAAGA GCACAGAGGCCGGCGGCACGGTCGAGCGCGGCTGGAAACCAGTGTTCAGG CCTCTGGAGAGCACCGTTGCCAACGGCGATCTGGGCGAGGCAGCGCGTTG GATGCCGGTGTTTGAATCTCAACAAAGACGAAGCCGCGGAGGAGAAGTTG GGGGCAGCAGCGACGATTACAGGGCTGTTGCGGTACCCCAAGGCTTCGAG CTCGAGACCACGAGGGAAGGTATCATCAGAGTCCAGGGCTCAGGAGCCGT GGGTGACCCCCGCCGCGGAGCCTTCGTGCCTGGAGCCATAGGGAGGAGCG CGTGGAGGCCCGCGTTCGGGACCCCGGGCAGCCTCGACATCGCAGGCGGT GAGCACGAAGCCGGCGGAAATCGTGGACCCGAAGCGATGGGGACCACCGG CAACCAGGAGGAGGAACATTGTCCGTACGAGACGTTCCAGCAATTCAAAG CCAGGAGAAGCAGACGCAGCAGTAGCACCAGTGGCAATAGCGGCGGGGGT AGCATGCGCGAGAAGAACGGTGGGCGCGCGCACGAAGGCTTATTTGATCC GTCGGGCTGTGGAGCGGAATGTTCAGATGGTTGACGTCGTGAGTAGGAGG TGCGCCCACCCAGACTGTTCCAAACAGCCTTCCTTTGGAACGAAAGGCCA GAAGGTAGAATACTGCAGCGGGCACGCGACGCCAGGGATGGTGAATGTGG TCACCAAGCGGTGTGCCCACCCAGACTGCACCAAGCAGCCGTCGTTTTTC GTCCCCGGCAGCACGAAGGTGGAATTGTGCTTGACGCATGCCAAGGACAG GACGCTGCGTTCGAAGGCAGGACACGCCCGTGAGGAGAGTGCTAGGTTTA TTGTTGATCAGAGCCAACGTGGACATGAGCTCGACTTGGAATCCACCGCA CCAATCCCTTCGAGCCGAACAGATGGGAAGCGGAAGAAACCTGTCGGAGC AGCGGCACAAAAAGCCCGATCACCGGTGAGGGGCTCGTCCAGCACAGCAC GCGAGTTCGAGCCCGGGCATCGGGCGGTCGTACAGCCGCCGCCGCCGCCG CCGCCAGTGAGACATAGATTAGCGGTTGTGCAGCAGTCGCCGTTGCCGGC ATTGCGAGCCGTGCTTGCGCAGGGAACGTCGACCACCACGAGCCCGGCCA CACCACCGGTACCGCAACGATCACACTTTCTCGTGCACCCAGAACTACCA GAGGTGGACGACGACCTGGCGGGGAAAAGTCTCCCCGCTCATTGTCCCCA TGGAGTCCTGTCGTGCGCGTTGAAGAGCACAGAGGCCGGCGGCACGGTCG AGCGCGGCTGGAAACCAGTGTTCAGGCCTCTGGAGAGCACCGTTGCCAAC GGCGATCTGGGCGAGGCAGCGCGTTGGATGCCGGTGTTTGAATCTCAACA AAGACGAAGCCGCGGAGGAGAAGTTGGGGGCAGCAGCGACGATTACAGGG CTGTTGCGGTACCCCAAGGCTTCGAGCTCGAGACCACGAGGGAAGGTATC ATCAGAGTCCAGGGCTCAGGAGCCGTGGGTGACCCCCGCCGCGGAGCCTT CGTGCCTGGAGCCATAGGGAGGAGCGCGTGGAGGCCCGCGTTCGGGACCC CGGGCAGCCTCGACATCGCAGGCGGTGAGCACGAAGCCGGCGGAAATCGT GGACCCGAAGCGATGGGGACCACCGGCAACCAGGAGGAGGAACATTGTCC GTACGAGACGTTCCAGCAATTCAAAGCCAGGAGAAGCAGACGCAGCAGTA GCACCAGTGGCAATAGCGGCGGGGGTAGCATGCGCGAGAAGAACGGTGGG CGCGCGCACGAAGGCTTATTTGATCCGTCGGGCTGTGGAGCGGAATGTTC AGGCGGAATCAAGGTAAAACAAGATATACTACGTCAGCTACAAGAAGATG AATGGCTCCAGCAGCAGCAGCAGCAGCAGCAGCAGATGAAGTACCGGCCG CGGCCCTACGAAGTGCACGAGACGTCGAAGAGGTTCCGTCCGACAGAGCA ATATTGAGCGGAATCAAGGTAAAACAAGATATACTACGTCAGCTACAAGA AGATGAATGGCTCCAGCAGCAGCAGCAGCAGCAGCAGCAGATGAAGTACC GGCCGCGGCCCTACGAAGTGCACGAGACGTCGAAGAGGTTCCGTCCGACA GAGCAATATTGA back to top
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