mRNA_H-canaliculatus_F_contig1070.672.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1070.672.1
Unique NamemRNA_H-canaliculatus_F_contig1070.672.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1070.672.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.010e-15
Identity = 64/159 (40.25%), Postives = 83/159 (52.20%), Query Frame = 2 
Query: 1211 LVILIQTAYDAGLHIPPVNRGEIAVGVEIRSFDVVGLHGKTYSFKRARPPPSFRVSFPPCIGPR*DVKPRFNLILISASTIREALPCTFFPFCRIVALCFFEIPLVFSLSPLVFRRSILSPVTKGESIGTLLLHMKKPVDRLKDKRTPCVALSSATALD 1687
            +VI IQTAYDAGLH+P +NRGE+AVGVE RSFDV GLH K YSFKR + P                +    + +  +   I   +  +  P  ++V+ C                   LS  +KGE+I TLLLHM KPVD + D     VALS AT+ +
Sbjct: 1068 VVIFIQTAYDAGLHLPSLNRGEVAVGVESRSFDVRGLHDKKYSFKRGQLP---------------LLPGHLSSVYRAQHFIHAYMHTSVLP--QLVSFC--------------LSSCYLS--SKGETIKTLLLHMTKPVDGVMDPSAAYVALSRATSFE 1193
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1070.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT57_9PHAE2.010e-1540.25ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1070contigH-canaliculatus_F_contig1070:5288..10159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size3871
Cds size462
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.7630954-UTR-H-canaliculatus_F_contig1070:5287..55631622928732.7630954-UTR-H-canaliculatus_F_contig1070:5287..5563Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 5288..5563 +
1696845543.0765896-UTR-H-canaliculatus_F_contig1070:5287..55631696845543.0765896-UTR-H-canaliculatus_F_contig1070:5287..5563Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 5288..5563 +
1622928732.7767317-UTR-H-canaliculatus_F_contig1070:5806..60201622928732.7767317-UTR-H-canaliculatus_F_contig1070:5806..6020Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 5807..6020 +
1696845543.0890827-UTR-H-canaliculatus_F_contig1070:5806..60201696845543.0890827-UTR-H-canaliculatus_F_contig1070:5806..6020Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 5807..6020 +
1622928732.7978456-UTR-H-canaliculatus_F_contig1070:6197..68261622928732.7978456-UTR-H-canaliculatus_F_contig1070:6197..6826Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 6198..6826 +
1696845543.1002464-UTR-H-canaliculatus_F_contig1070:6197..68261696845543.1002464-UTR-H-canaliculatus_F_contig1070:6197..6826Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 6198..6826 +
1622928732.8096898-UTR-H-canaliculatus_F_contig1070:7270..77631622928732.8096898-UTR-H-canaliculatus_F_contig1070:7270..7763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 7271..7763 +
1696845543.1097307-UTR-H-canaliculatus_F_contig1070:7270..77631696845543.1097307-UTR-H-canaliculatus_F_contig1070:7270..7763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 7271..7763 +
1622928732.8819427-UTR-H-canaliculatus_F_contig1070:8225..83311622928732.8819427-UTR-H-canaliculatus_F_contig1070:8225..8331Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 8226..8331 +
1696845543.1279588-UTR-H-canaliculatus_F_contig1070:8225..83311696845543.1279588-UTR-H-canaliculatus_F_contig1070:8225..8331Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 8226..8331 +
1622928732.896562-UTR-H-canaliculatus_F_contig1070:8468..101591622928732.896562-UTR-H-canaliculatus_F_contig1070:8468..10159Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 8469..10159 +
1696845543.136849-UTR-H-canaliculatus_F_contig1070:8468..101591696845543.136849-UTR-H-canaliculatus_F_contig1070:8468..10159Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1070 8469..10159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.8255074-CDS-H-canaliculatus_F_contig1070:7763..82251622928732.8255074-CDS-H-canaliculatus_F_contig1070:7763..8225Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1070 7764..8225 +
1696845543.11896-CDS-H-canaliculatus_F_contig1070:7763..82251696845543.11896-CDS-H-canaliculatus_F_contig1070:7763..8225Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1070 7764..8225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1070.672.1prot_H-canaliculatus_F_contig1070.672.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1070 7764..8225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1070.672.1

>prot_H-canaliculatus_F_contig1070.672.1 ID=prot_H-canaliculatus_F_contig1070.672.1|Name=mRNA_H-canaliculatus_F_contig1070.672.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
MKKPVDRLKDKRTPCVALSSATALDRLYMVEPVNLDDLCHKPDKDVAATL
GFLGRYGTATEAAFLNNPSQFTPALVRLLDDSYDRPGSGLRKGSENRAAG
PGKNGEGATSRDGSGRGSLGVTNPSDSRHFPAAQLPEQALPQRRHRLHSC
RLR*
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mRNA from alignment at H-canaliculatus_F_contig1070:5288..10159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1070.672.1 ID=mRNA_H-canaliculatus_F_contig1070.672.1|Name=mRNA_H-canaliculatus_F_contig1070.672.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4872bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1070:5288..10159+ (Hapterophycus canaliculatus Oshoro5f female)
CCGATGCTGGGTTCATGTGCGGCGGATACAGGAGCCGCAAGGCGATAAGC
GTCGACAACGTGCGTCTGGCCCTCGCTTCGGGGGCGCTGGACTCTCCGCT
GAGCGGAGCGAGCTCAGATCCGTGCAGCGCAATCAGCAACTACTGCGCCA
AGCCCGGTGCCATATCTGCTCTCACCAGTCAGTGCCAGCATGGCCTGCCT
CGAGACTTCGCCCGCGCTCGGTAGCCCTGCCCCGAGGACTGTGGCAGCGA
ATCTCCCCCCGACAGCGTCGCGAAGGGTAAGATGACGAAGGTGGTGTGCA
TTGGTGTCTGTGATGGATTTTTTCAAGCAGGGATTTTAAAATATCCCATG
AAAACTTGTGAAAACGTTCTGGGGTATTCACGCAATTTGACGCACCTGCG
CATGATCTTCAGAGGATGGATGATGCAGAGCCGCGCACCCGAGCCTGTGG
CGCAAGGGGCCAGTTTGATCTTGGAGATCGACCTCCGTCGAATACTGATA
TTTTGCCGCACTCAAACAGACGAGGACCGCGGATAAAAACTTTTCTGGGG
GGCATCCGCGCAACTGGATGCTGCTGCGCATGATCTTCAGACGATGATTG
ATGCAGAGCCGCGCACACAAGCCTGTGGTCCAAGGGGTCAGTTTGGTCTT
TGAGGTCGACCTTCGCCGAAGACAAACAGAGGCACCCGAAGAGACCGCAG
AGGCACATGCATGCTTCAACGCAAAGCGATCAGGTGCGTTCCACTCAAAT
CTCACACGCGCTCCTCACAACTTCGGTCTATTACCAGACCCACTCAATAT
ACGAGTATCATTTTCCCCGCCTTAGCAAACCCTTTTCACATTGGTCCGTC
GTCACTAATGGCCTATCCCTGTTTCCGCCTGCCTTTGTGCTCTTCGATTT
CCACCTGGAGCCGGTTGGAGGCAAGTCAACTGCGCGCGGAGCCAAAGGTC
CGACCCGTTTGAGCAACCTCATCACCACCGAGCGCGTGGGACACACTAGC
TTTTGGCAACGCATCCGTCGTGCTCGACGAAACGAACAAGAGGTTCTCGC
CCACGTAGGTGCTCATCATGGACCGTCTCCGTCGAGGAGAATGCACTACC
CGCGACTTGAACGCCATCAACGTTCGCGTGCTGAACAGTCCATCGTATCA
ACGGGACTGATCTCTCGGTCGCATCGAACATGAAAGATTGTTGGATTGCC
CAATCGATTAGTTTTCGCAACAAGGTGATTCCGACGTCGCCCACTGCGAA
TCACTCCGTTATACATTCATCAAACATTTACACTTCACTGCTGTTGTCAT
CCACCTTCTATCATATCCCACTTGTGTTCACTCATCGGAATATCATTCGC
ACGATTCTTTTCCACCCTTCTCCTCGAAGGTCACTCTGGCCCTTAATCGA
CCAATCAGGAAACTGCGGGCACCTTTTCTCTCTCTCTTGAAAGTGAAAAA
AGGGGTTCGAGGCGCGTGGTGCTGCCTGCTACATCGCCAAAGCGAGCGAT
CTCCTAACGGGGTCCGGCTTCAAGCATCAAAAGGAAAAGGTCGGCTCCGG
ACAACATACCGTCCTCCTGCTTTCCTCACTCGTGTCTGCCTTGCAGACAT
GCATACCGTTTTCCTCAAAGCCCTCTCATGTTTGCGACACGTGCGCATTG
TCCTCCTCGATCGGCTCGCCGACCCTAATCCTTCGTTTTCATAGCCTCAT
GACCCCCCCTCCGGCTAGCCTACCGGTCTACGAGACGGCATGGAGCGTTT
GGAGGAGACAAAGACAGCCCATCTGCCCAGAATCGTGTGCCTCAGCATCG
GCCTCCCGGTGTTCTTGATCAAACCCGTGGGTGAAATGGTCGACGTGGGA
GTTTACAACAATTCCGACGGTGAGGTGATTCAACCGTCTACTCTTCCCTA
CCTCATTCTCCACCTGCATTGCCCTCGAATCTTCGAACCTTACCTCTTCC
TAAATTATAAAACGTTTTCCCGCATCTTTTCAGGTACCATCATCAGCATA
GATCTCGACCCCCGCGGGCTCGTTTCGAGCGACAGGTCGGGGGGCGATCG
TGTTGTGCACTTGAAACTTGAAGCTTGGTTATCTTGATTCAAACCGCCTA
CGACGCCGGTCTGCACATTCCTCCAGTCAACCGGGGAGAGATCGCCGTCG
GCGTTGAGATCCGCTCCTTCGACGTTGTCGGACTACACGGCAAGACGTAT
TCTTTCAAACGTGCGCGCCCCCCCCCCTCCTTCCGGGTAAGCTTTCCTCC
GTGCATCGGTCCCAGGTGAGACGTTAAACCCCGTTTCAACCTCATCCTGA
TTTCTGCTTCTACGATCAGGGAGGCACTTCCGTGCACTTTCTTCCCTTTT
TGTCGAATCGTTGCACTTTGCTTCTTCGAGATTCCTCTCGTTTTCTCGCT
TTCACCCCTTGTCTTTCGTCGTTCTATCCTCTCCCCGGTTACGAAGGGAG
AGAGTATCGGAACCTTGCTGCTCCACATGAAGAAGCCGGTCGACAGACTT
AAAGACAAGAGGACGCCGTGCGTCGCTTTGTCGAGCGCTACGGCTCTCGA
CCGACTCTACATGGTCGAGCCCGTAAACCTTGACGACCTGTGCCACAAAC
CGGATAAGGACGTCGCAGCTACGCTCGGCTTCCTTGGCCGCTACGGCACG
GCGACCGAGGCTGCCTTCCTGAACAACCCTTCGCAGTTTACGCCAGCCTT
AGTTAGATTACTCGACGACTCATACGACCGTCCAGGAAGTGGGCTGAGGA
AGGGGAGTGAGAACCGCGCGGCCGGCCCTGGCAAGAACGGTGAAGGTGCT
ACATCCCGGGATGGCTCGGGACGAGGTAGCTTGGGGGTGACAAACCCTTC
TGACTCCCGCCACTTTCCTGCTGCCCAACTCCCGGAACAAGCGCTTCCAC
AACGCCGCCATCGCCTCCACTCTTGCCGCCTTCGATGAGCAACCTCTACC
ACCCACACAGTCCCCTTCTACGAAGAGCTTCTTCACCGCTGCGGACGCGG
TCCGCAAACATACGGAAAACGGCGCGCAACCTGCTGCCGTCCAGGTAAGA
CACAGTTATGGCGCTGGTTTACCATTTTCACGGCGTCTACTTCCTTCTAA
CACCGGATCACACTCCTTGAGGGCAACGTTTCATAACTCTTGTCTTCGCC
AACCACGTGCACTTGTACTTGTCTTCCCCAGGCACTGATCGCAGCGTCGC
GCGACTTCGTCATAACCGACGGCGGCTTGCCTGGTACCGGGGACGTCATG
GGTGACACGGCAAGCGTCTTTGAAGATTTCTGTCGACGGTACCATGCCGG
ACTGCCGCCGACAGCCAGCTGGCCTAATAGGCACGACCGTCGACTTCAAA
TCGTCATGGCCACACGCGAATCTCCAGGGCTAGCCTGGAGACGGAACACT
ACTTGCTACGTGGACGACCGTCACTTACGAAGGGTCACCCCCGAATAATC
TGCCGCGTTGCGGAACCTGGCCGTCAGGGTCCCTCACGGCGTGTCTCGAA
GCAAGCAGCAGACAATGGATGAGTCGTTCACGGGAGGTTCATGTTTTGAT
TTTTCTTTCCGTGGCCCCGCAAGTCGCCCGTCGTGTCGTTCCGTCACTAT
CCCTTTTTGTGCTCGGAGTCACCTCCCCTCTGCGATCGTCACCGCACCAG
ATCGCTTATTCCTCTCGTCCAGTGCGGTTGCGGCAGACGCGCTTTCAAGC
GTTGCTCCGACGCCATCGGTTTCTTTTCCGTAGGGCTTCGAGTACTCCCT
AGTCTCGGTAGTGCAGTGTACAACGTTTCGGGTGGTACCCAGTACGTCAC
GCAGTTCCGATTGCAGGGGGATTGGTTGCAGTACGATTGTCTCAGTCTAC
CACCTACTGGGGCCACCACCCGATCCTGCTCCTTCGATGAGGATTAGCAT
TCCGGCGAGCAGGTCTCGCACGTGTACTTGAGGACAGGGTTGCAACCCGC
CTGCAGCCGGGGACCTTACTAGCGAAAGATCGCCTGGCGAACCCTCTGCC
CTCAGCCCTGCCTTCAGACGCTCTGGAGAATGTGCTAAATGGTCGTCAAC
TAGGCGAACCCTGCCTGTGGGCGTAGGTTGTGCGCTGTTTCGAGTCCGTT
TGGCTCTGGATCGACCCGGATTGTTCTCGCTCCATGTGTAAATAGGCTTC
TCGGAGATTCTTCAACAGTAAGCTATCAAAAAGAAAGTTGGGAGCGCCCT
TTTGGAGGGCAATCAATCATGAGATAGACCATGCTTTCATCTAGAGTCTC
GAAACATACTTCCTGTCTGTGATGAGAACATCAAGTACGTGAATGAGTTC
ACTATAGTTCAAGTAATCGGTATTGCCCATCCCGAAAGCGTGTCAGTGGC
GGGGTCGAAAGAAGCAGCTGATAGTGACGAGGATGAGAAGGTGCACGCAG
GCGACTACCGTAATCATGCGGATTATCGCACCCTCCCTTGACCGACTTTC
GAAGGTCGGTTATTCCGCGACAAGAGGATTGTGAACGCCGCAAAGGGTGG
CGTTGGAAGGATCTCGTCGATGGCTGTCAGGTAACGTGTCGTTTGGCAGT
TGTACCCTATTCGCGGCGGAGAAATCGAACTTTGAAAGTCGTTCCAGGGG
GGGTGCGACAACTCGCATGATTACGGTATCCTCATTGGTTGCACAAGTTG
TACTGTGTGTGGACGAAAACACCGCAAGCGTGGTTGGAAGGAGAGATTTT
CCGACGAGAGTAGATGTCGCGAGAGATAAAATGCACACACTTGTCCAAAG
CGTTCCCGGATCGCCTCAAATCTCTAGCTCAGAGAACTACGTTCAGTGCG
AAAGGCGGGATCCAAATGCCGGCTGCCCCGAAAGTGAATGGGAGGGTAAG
CAGGGAGCAAACACAAAATGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1070:5288..10159+

>mRNA_H-canaliculatus_F_contig1070.672.1 ID=mRNA_H-canaliculatus_F_contig1070.672.1|Name=mRNA_H-canaliculatus_F_contig1070.672.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1070:5288..10159+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAAGCCGGTCGACAGACTTAAAGACAAGAGGACGCCGTGCGTCGC
TTTGTCGAGCGCTACGGCTCTCGACCGACTCTACATGGTCGAGCCCGTAA
ACCTTGACGACCTGTGCCACAAACCGGATAAGGACGTCGCAGCTACGCTC
GGCTTCCTTGGCCGCTACGGCACGGCGACCGAGGCTGCCTTCCTGAACAA
CCCTTCGCAGTTTACGCCAGCCTTAGTTAGATTACTCGACGACTCATACG
ACCGTCCAGGAAGTGGGCTGAGGAAGGGGAGTGAGAACCGCGCGGCCGGC
CCTGGCAAGAACGGTGAAGGTGCTACATCCCGGGATGGCTCGGGACGAGG
TAGCTTGGGGGTGACAAACCCTTCTGACTCCCGCCACTTTCCTGCTGCCC
AACTCCCGGAACAAGCGCTTCCACAACGCCGCCATCGCCTCCACTCTTGC
CGCCTTCGATGAATGAAGAAGCCGGTCGACAGACTTAAAGACAAGAGGAC
GCCGTGCGTCGCTTTGTCGAGCGCTACGGCTCTCGACCGACTCTACATGG
TCGAGCCCGTAAACCTTGACGACCTGTGCCACAAACCGGATAAGGACGTC
GCAGCTACGCTCGGCTTCCTTGGCCGCTACGGCACGGCGACCGAGGCTGC
CTTCCTGAACAACCCTTCGCAGTTTACGCCAGCCTTAGTTAGATTACTCG
ACGACTCATACGACCGTCCAGGAAGTGGGCTGAGGAAGGGGAGTGAGAAC
CGCGCGGCCGGCCCTGGCAAGAACGGTGAAGGTGCTACATCCCGGGATGG
CTCGGGACGAGGTAGCTTGGGGGTGACAAACCCTTCTGACTCCCGCCACT
TTCCTGCTGCCCAACTCCCGGAACAAGCGCTTCCACAACGCCGCCATCGC
CTCCACTCTTGCCGCCTTCGATGA
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