mRNA_H-canaliculatus_F_contig10699.667.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10699.667.1
Unique NamemRNA_H-canaliculatus_F_contig10699.667.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10699.667.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 5.910e-38
Identity = 80/155 (51.61%), Postives = 98/155 (63.23%), Query Frame = 2 
Query:  539 PFVVAGNVVLAMAASAWLVSPGRLGVDGQPDKYMTAATWRAFLSQGVDGDASWFARWNAMAQPRIDLLASLVEAEAAEKGGAEGGTDGAGRRLNGGSGGL-------RPFRVTMVGDSTMMQQHGVICAFLGERSGRRFNPALHQEECCIDTLPR 982
            PF + G  + ++ A+  ++   R GVD QP+KYM+ A W+ FLS GV GD +WF RWN+MAQPRID +A+L EAE                  NGG           +PFRV MVGDSTMMQQHGVICAFL ER+G  F+ A HQ+ECCIDTLPR
Sbjct:  141 PFFLVGTTLASVLAACGVLVMHRAGVDAQPEKYMSGARWKNFLSSGVSGD-TWFTRWNSMAQPRIDKVAALAEAE-----------------RNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLFDAAGHQDECCIDTLPR 277
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BLAST of mRNA_H-canaliculatus_F_contig10699.667.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.490e-37
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 2 
Query:  539 PFVVAGNVVLAMAASAWLVSPGRLGVDGQPDKYMTAATWRAFLSQGVDGDASWFARWNAMAQPRIDLLASLVEAEAAEKGGAEGGTDGAGRRLNGGSGGLRPFRVTMVGDSTMMQQHGVICAFLGERSGRRFNPALHQEECCIDTLPR 982
            PFV+    + +M A+  ++     G+D Q DKYM+ A W+ FL  GV GD +WF RWNAM QPRID LA+L E E           +      +GG G  +PFRV M+GDSTMMQQHGVICAFL ER+G  F+ A HQ+ECCIDTLPR
Sbjct:   63 PFVLVCTTLSSMLATCGMLVMLPAGLDAQSDKYMSGAQWKNFLESGVGGD-TWFTRWNAMVQPRIDKLAALAETE----------RNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAERAGSLFDAAGHQDECCIDTLPR 199
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BLAST of mRNA_H-canaliculatus_F_contig10699.667.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.250e-17
Identity = 54/137 (39.42%), Postives = 70/137 (51.09%), Query Frame = 2 
Query:  587 WLVSPGRLGVDGQPDKYMTAATWRAFLSQGVDGDASWFARWNAMAQPRIDLLASLVEAEAAEKGGAEGGTDGAGRRLNGGSGGLRPFRVTMVGDSTMMQQHGVICAFLGERSGRRFNPALHQEE---CCIDTLPRHE 988
            +L S  R+ V G+P   +    W      G DG+A WF  WN   Q ++DLLAS+ E    E+   E                  PFRV M+GDSTM  Q G IC F+GER GRRF+P + Q     CC+DTLP+ +
Sbjct:   13 FLFSMLRVNVLGEPCNDVVCGYWWKNYLSGEDGNA-WFDSWNKFMQAKLDLLASIAE----EREDTE----------------TEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQGRAPGCCMDTLPKED 128
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BLAST of mRNA_H-canaliculatus_F_contig10699.667.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-16
Identity = 54/137 (39.42%), Postives = 70/137 (51.09%), Query Frame = 2 
Query:  587 WLVSPGRLGVDGQPDKYMTAATWRAFLSQGVDGDASWFARWNAMAQPRIDLLASLVEAEAAEKGGAEGGTDGAGRRLNGGSGGLRPFRVTMVGDSTMMQQHGVICAFLGERSGRRFNPALHQEE---CCIDTLPRHE 988
            +L S  R+ V G+P   +    W      G DG+A WF  WN   Q ++DLLAS+ E    E+   E                  PFRV M+GDSTM  Q G IC F+GER GRRF+P + Q     CC+DTLP+ +
Sbjct:   13 FLFSMLRVNVLGEPCNDVVCGYWWKNYLSGEDGNA-WFDSWNKFMQAKLDLLASIAE----EREDTE----------------TEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQRSAPGCCMDTLPKED 128
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BLAST of mRNA_H-canaliculatus_F_contig10699.667.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-6
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:  728 RIDLLASLVEAEAAEKGGAEGGTDGAGRRLNGGSGGLRPFRVTMVGDSTMMQQHGVICAFLGERSGRRFNP 940
            ++D+LA+LVE +       +GG     RR        +PFRV MVGDSTM  Q+G +C F+GER GRR+NP
Sbjct:   64 KLDVLAALVENQ-------QGG-----RRE-------QPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNP 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10699.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0U4_ECTSI5.910e-3851.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH8_9PHAE3.490e-3752.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKK9_ECTSI1.250e-1739.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI1.120e-1639.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP2_ECTSI1.800e-646.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10699contigH-canaliculatus_F_contig10699:77..2297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1146
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10699.667.1prot_H-canaliculatus_F_contig10699.667.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10699 664..2297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.8070374-UTR-H-canaliculatus_F_contig10699:76..5711622928730.8070374-UTR-H-canaliculatus_F_contig10699:76..571Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10699 77..571 +
1696845542.0087342-UTR-H-canaliculatus_F_contig10699:76..5711696845542.0087342-UTR-H-canaliculatus_F_contig10699:76..571Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10699 77..571 +
1622928730.820663-UTR-H-canaliculatus_F_contig10699:587..6631622928730.820663-UTR-H-canaliculatus_F_contig10699:587..663Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10699 588..663 +
1696845542.0187843-UTR-H-canaliculatus_F_contig10699:587..6631696845542.0187843-UTR-H-canaliculatus_F_contig10699:587..663Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10699 588..663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.8362842-CDS-H-canaliculatus_F_contig10699:663..8001622928730.8362842-CDS-H-canaliculatus_F_contig10699:663..800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10699 664..800 +
1696845542.0294728-CDS-H-canaliculatus_F_contig10699:663..8001696845542.0294728-CDS-H-canaliculatus_F_contig10699:663..800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10699 664..800 +
1622928730.8493712-CDS-H-canaliculatus_F_contig10699:1460..16951622928730.8493712-CDS-H-canaliculatus_F_contig10699:1460..1695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10699 1461..1695 +
1696845542.0384974-CDS-H-canaliculatus_F_contig10699:1460..16951696845542.0384974-CDS-H-canaliculatus_F_contig10699:1460..1695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10699 1461..1695 +
1622928730.8686116-CDS-H-canaliculatus_F_contig10699:2096..22971622928730.8686116-CDS-H-canaliculatus_F_contig10699:2096..2297Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10699 2097..2297 +
1696845542.0501666-CDS-H-canaliculatus_F_contig10699:2096..22971696845542.0501666-CDS-H-canaliculatus_F_contig10699:2096..2297Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10699 2097..2297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10699.667.1

>prot_H-canaliculatus_F_contig10699.667.1 ID=prot_H-canaliculatus_F_contig10699.667.1|Name=mRNA_H-canaliculatus_F_contig10699.667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
MAASAWLVSPGRLGVDGQPDKYMTAATWRAFLSQGVDGDASWFARWNAMA
QPRIDLLASLVEAEAAEKGGAEGGTDGAGRRLNGGSGGLRPFRVTMVGDS
TMMQQHGVICAFLGERSGRRFNPALHQEECCIDTLPRHEQSPDQAEETAG
AGASEDQNGNSTSSRSSSSSNGGGQTPGLSVDGAANSGAGA
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mRNA from alignment at H-canaliculatus_F_contig10699:77..2297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10699.667.1 ID=mRNA_H-canaliculatus_F_contig10699.667.1|Name=mRNA_H-canaliculatus_F_contig10699.667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2221bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10699:77..2297+ (Hapterophycus canaliculatus Oshoro5f female)
AGGCATTTCTATCCCTATCCCCCGGCGGACACCTGTTTCGCGGTCGATGC
TCTCAGCGCCTCTTCGACGTTCGATCCCGCGCCACCAACGCGGCCGTCGT
GCTCTAGCAACCCAAGCATCACCGCCGCCACCACCACAATCCCCGGCCGT
GTGAAGACGGAGAGCATCAGCGTCAACACGTTAAGCCCTGCCGCGAGATC
CGTCCCCGCTTGTGGGGTCTCGTGACGACGAGCATGATGTTCGGCCCGAA
AAGACAGGCCCCGCGAGGGGCAACAAACGCCCGTACGGTGGCCGAGCCTG
TCGCCGGCGCCGGTACGCGCCCTACCACCACCACCACCACCACCACCACC
ACAAGCAACAAGAACACCGCCACCGGCGCAGCAGCAGCGTCGTGGTCGTG
GTGGTGGCGACGGCTTCCGTGTCCATCACCATTCTCACCCTCTCCGCCCT
GGAGCTCGGAAGCGAGCGCGAGCAGCGGCAGCAGCACTCGTGGCGGCGGC
GGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCCGGAGAAG
GCTCCCGTTCGTCGTGGCCGGGAACGTCGTCCTGGCGATGGCGGCATCCG
CGTGGCTGGTGTCCCCGGGGCGCCTGGGCGTCGACGGCCAGCCCGACAAA
TACATGACCGCAGCGACCTGGAGGGCGTTTCTGTCCCAGGGGGTCGACGG
CGACGCGAGCTGGTTCGCTCGGTGGTGAGTGTGTTGCGACCCCCTGCGTT
TGCCACCCGCCCCTGTGTATCGTCCGCATAGAGGTAGGTTTTGCTTGCGG
CGGTGGCGAAGTGTGCCGCGCTCCTTGCGCGCTGGAGGATTTTTGTTTTG
TGTGTGAGTGTGTGTGTGTAAGCGTGTGTGTGTGTGTGTGTGTGTGTCAT
TGCCACCTTATGCGGGCGATCCGCAATCATGATGGAGCCCACCCGGGTAT
GCGCACGCTGACCTCGCAGGCATGGACGGCGTAGACATCCCCGTCCTCTG
GACCCGGGCAGTGGTAGTAGATATGCGCGTACAGCCATCGATCGCCCTCG
CAGCTGTGAGCGCCGTCGCGCTTGCCCTTTTTTTTTCATTGTTGTTTTCT
CGCGCGGTGAGCACGCGTGCACGTCACGAGGAGGACGGGCCGACGGGGGC
GAGCGGAGCGCCTCTCGCCGATCGGGGACGCTGCGCCGGCTCGGCTCGCC
CGAGCGGAGGGCGACCCCAGCGTGAGCGCCGATGGCACCACCACCGCCGT
CAGCACGAGCTGCGTCGTACCGCTCCTTCTCCCTCCTGCACTGCTCTCGC
CCCCCTGCCGCCTCCACCTCCGCCGCCGCCGCCGCCGCCGCCGCTGCAAC
AACCGCGATCGACCCACGCCTCCCCCCCCCCCAGGAACGCCATGGCGCAG
CCGAGAATAGACCTGCTCGCGTCTCTCGTCGAAGCCGAGGCCGCGGAGAA
AGGAGGGGCGGAAGGGGGCACCGACGGCGCCGGCAGGAGGCTCAACGGCG
GCAGCGGGGGCCTCCGGCCCTTCCGCGTGACTATGGTGGGGGACAGCACC
ATGATGCAGCAGCACGGCGTCATCTGCGCCTTCCTCGGAGAGCGGTCCGG
CCGGAGATTCAACCCGGCGGTGAGCTCTTCGGGGAATCGATCGATCGATT
GATTGATCGGTCCCGCTAGCTTGGGGGCCCCGTGTCCGCGTTGCTGTGTG
TGCCCGAACTCGCACGATTTTGTCCGTAGTGCAGAGGGGGGGGGCGTTCG
CAGAGTGGAGCCCGCGGAGTGAGAACGGAGCGCAGGCGACAGCGGTATGT
TTGTCCCCACGTTTTGCTTGCGAAAGGGCCTCTTGGCCGTGCTTGCGTCG
ATTGGTGTACGCCCACGCGCCCCTCCTCTTCCCCCTTGACGAGGGGGCCC
GGGTAGATCGGGGACCCCGCACAGCAGAAAAAAGCGCGCGGAGACCCCGC
TCGTTCCCCCAACGCTGTTCAGCACCAACGGGACCCTTGCCCCCCCCCCT
CCCCCCCCCCCGCTGACCAGCTACATCAAGAGGAGTGCTGCATCGACACG
TTGCCAAGACATGAGCAAAGCCCCGATCAGGCGGAAGAGACGGCGGGGGC
GGGCGCAAGCGAAGATCAAAACGGCAACAGCACCAGCAGCCGCAGCAGCA
GCAGCAGCAACGGCGGCGGTCAGACCCCCGGGCTCAGCGTCGACGGCGCG
GCCAACTCGGGGGCGGGGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10699:77..2297+

>mRNA_H-canaliculatus_F_contig10699.667.1 ID=mRNA_H-canaliculatus_F_contig10699.667.1|Name=mRNA_H-canaliculatus_F_contig10699.667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10699:77..2297+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCATCCGCGTGGCTGGTGTCCCCGGGGCGCCTGGGCGTCGACGG
CCAGCCCGACAAATACATGACCGCAGCGACCTGGAGGGCGTTTCTGTCCC
AGGGGGTCGACGGCGACGCGAGCTGGTTCGCTCGGTGATGGCGGCATCCG
CGTGGCTGGTGTCCCCGGGGCGCCTGGGCGTCGACGGCCAGCCCGACAAA
TACATGACCGCAGCGACCTGGAGGGCGTTTCTGTCCCAGGGGGTCGACGG
CGACGCGAGCTGGTTCGCTCGGTGGAACGCCATGGCGCAGCCGAGAATAG
ACCTGCTCGCGTCTCTCGTCGAAGCCGAGGCCGCGGAGAAAGGAGGGGCG
GAAGGGGGCACCGACGGCGCCGGCAGGAGGCTCAACGGCGGCAGCGGGGG
CCTCCGGCCCTTCCGCGTGACTATGGTGGGGGACAGCACCATGATGCAGC
AGCACGGCGTCATCTGCGCCTTCCTCGGAGAGCGGTCCGGCCGGAGATTC
AACCCGGCGGAACGCCATGGCGCAGCCGAGAATAGACCTGCTCGCGTCTC
TCGTCGAAGCCGAGGCCGCGGAGAAAGGAGGGGCGGAAGGGGGCACCGAC
GGCGCCGGCAGGAGGCTCAACGGCGGCAGCGGGGGCCTCCGGCCCTTCCG
CGTGACTATGGTGGGGGACAGCACCATGATGCAGCAGCACGGCGTCATCT
GCGCCTTCCTCGGAGAGCGGTCCGGCCGGAGATTCAACCCGGCGCTACAT
CAAGAGGAGTGCTGCATCGACACGTTGCCAAGACATGAGCAAAGCCCCGA
TCAGGCGGAAGAGACGGCGGGGGCGGGCGCAAGCGAAGATCAAAACGGCA
ACAGCACCAGCAGCCGCAGCAGCAGCAGCAGCAACGGCGGCGGTCAGACC
CCCGGGCTCAGCGTCGACGGCGCGGCCAACTCGGGGGCGGGGGCGCTACA
TCAAGAGGAGTGCTGCATCGACACGTTGCCAAGACATGAGCAAAGCCCCG
ATCAGGCGGAAGAGACGGCGGGGGCGGGCGCAAGCGAAGATCAAAACGGC
AACAGCACCAGCAGCCGCAGCAGCAGCAGCAGCAACGGCGGCGGTCAGAC
CCCCGGGCTCAGCGTCGACGGCGCGGCCAACTCGGGGGCGGGGGCG
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