mRNA_H-canaliculatus_F_contig10694.665.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10694.665.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI) HSP 1 Score: 289 bits (740), Expect = 9.390e-82 Identity = 305/580 (52.59%), Postives = 342/580 (58.97%), Query Frame = 1 Query: 1 KQLFKVATPIIENNFPETQHATYVLPCSGIITMAWKVISSFIDPGTADKIRLVKDFDDPSLLEAFTPETLKAFTSVNPSIAPPQPYVAPDPLANPPPPFKLSTSIFSSNXXXXXXXXXXXXXXXXXXXXQEGLPPQ-HPRQSSA-IPASATAAAPVGDGVADHNRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSGSNVGQPPPHQAXXXSPAGDSLYAVSMSGGVEGYGGGSGSKXXXXXXXXAADSGDRSEGRFVAKPATSGA----------------GGDAGVTXXXXLDSGDVGA----SLPSPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM---------------NGGLGSSRGAFGEA--AMPQRAGSKTIELTERTGVLYKRRDTLRGRYAYRQKVAVLRFSPPEAASLSSQRRASRSGMASPXXXXXXXXXXXXXXXXRTDTEKVVSLEGAEVTLGTAMAGELYPFVVSFPTPXXXXXXLERTRSARDQXXXXXXXXXT------EDFMFTGVLE 1605 ++LFKVATPIIENNFPETQHATYVLPC+G+I MAWKVISSFIDPGTADKIRLVKDFDDP+L++AF+PETLKAF +V PS+APPQPYVAPDPLANPPPP K S S S+N G Q HP Q S XXXXXXXXXXXXXXXXX XXXXXXXXXXXXX XXXX SPSGSNVGQ H A XX AGDSLYA SM+GGVEG G + XXXXXXXX S + + RF++K + S GGD LDS A S P P+A XXXXXXXXXXX + G+ + G FG QRA S+T+E TERTGVLYKRRDTLRGR+AYRQ+ AVLRF+PPEA SLSS RR S SG XXXXXXXXXXXXXXX ++TEKV+SLEGAEVTLGTAMAG+LYPFV+SFP+ + TRS R+Q XXXXXXXX ED+MFTGVL+ Sbjct: 174 RKLFKVATPIIENNFPETQHATYVLPCNGVIMMAWKVISSFIDPGTADKIRLVKDFDDPALVKAFSPETLKAFVAVKPSMAPPQPYVAPDPLANPPPPSKSSASFLSNNINKVNDDNALPSSDTLEDDSHAGGEGQGHPAQQSRHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGGSMSXXXXXXXXXXXXXPGAAAAVQPRASLAAAXXXXGEAPPSPSGSNVGQ---HPAAXXXXAGDSLYATSMTGGVEG---GESTXXXXXXXXXXXXSNNVFDERFISKSSASXXXXXXXXXXXXXXXXXXGGDK-------LDSSSQRAGSLVSAPRPAAVAAAXXXXXXXXXXXSASGAPRPPVTVQGNGRPLEGAAAAAAAGVAAGRARPPAATAVRGGSGITGAGGGFGRGYGEEVQRATSRTLEFTERTGVLYKRRDTLRGRFAYRQQYAVLRFAPPEATSLSSLRRESGSGGV--PXXXXXXXXXXXXXXXXSETEKVMSLEGAEVTLGTAMAGDLYPFVISFPSTAPAPPTISPTRSHRNQPXXXXXXXXXXXXXXXEDYMFTGVLD 738
BLAST of mRNA_H-canaliculatus_F_contig10694.665.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE) HSP 1 Score: 271 bits (694), Expect = 2.960e-75 Identity = 296/595 (49.75%), Postives = 332/595 (55.80%), Query Frame = 1 Query: 1 KQLFKVATPIIENNFPETQHATYVLPCSGIITMAWK----------------VISSFIDPGTADKIRLVKDFDDPSLLEAFTPETLKAFTSVNPSIAPPQPYVAPDPLANPPPPFKLSTSIFSSNXXXXXXXXXXXXXXXXXXXXQEGLPPQ-HPRQSSAIPASATAAAPVGDGVADHNRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------SPSGSNVGQPPPHQAXXXSPAGDSLYAVSMSGGVEGYGGGSGSKXXXXXXXXAADSGDRSEGRFVAKPATSGAGGDAG---VTXXXXLDSGDVGA----SLPSPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM---------------NGGLGSSRGAFGEA--AMPQRAGSKTIELTERTGVLYKRRDTLRGRYAYRQKVAVLRFSPPEAASLSSQRRASRSGMASPXXXXXXXXXXXXXXXXRTDTEKVVSLEGAEVTLGTAMAGELYPFVVSFPTPXXXXXXLERTRSARDQXXXXXXXXX-----TEDFMFTGVLE 1605 ++LFKVATPIIENNFPETQHATYVLPC+G+I MAWK VISSFIDPGTADKIRL KDFDDP+L++AF+PETLKAF +V PS+APPQPYVAPDPLANP PP K S S S+N G Q HP Q S A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPSGSN GQ H AXXX GDSLYA SM+GGVEG G S XXXXXXXX +S + + RF++K + S AGG LDS A S P P+AXXXXXXXXXXXXXXXXXX XXXXX GL FG+ QRA S+T+E+TERTGVLYKRRDTLRGR+AYRQ+ AVLRF PPEAASLSS RR SG +++T KV+SLEGAEVTLGTAMAG LYPFV+SFP+ + TRS R++ XXXXXXXX TED+MFTGVL+ Sbjct: 136 EKLFKVATPIIENNFPETQHATYVLPCNGMIMMAWKGSAAAARRFMFLLGEKVISSFIDPGTADKIRLCKDFDDPALVKAFSPETLKAFIAVKPSMAPPQPYVAPDPLANPSPPSKSSASFLSNNINKVNDDNALPSSDTLEDDSHAGGEGQGHPAQQSRHSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSPSGSQVPRPEAAGMLQPGLSPAGAAAAVQRRASLAAAAGEAPPSPSGSNAGQ---HPAXXXXXXGDSLYATSMTGGVEG--GESTGGXXXXXXXXEGESNNVFDERFISKSSASHAGGHVNGYNFGGGDKLDSSSKRAGSLVSAPQPAAXXXXXXXXXXXXXXXXXXGTPRPPVTVQGNGRPLEGAAAXXXXXXXXXXXXXXXXXAVKGGSGLTGXXXGFGKGYGEEVQRATSRTLEVTERTGVLYKRRDTLRGRFAYRQQYAVLRFEPPEAASLSSLRR--ESGFGGVPLRPPPPTLTLLKGRGKSETGKVMSLEGAEVTLGTAMAGNLYPFVISFPSTAPAPTTISPTRSHRNRPXXXXXXXXXXXXXTEDYMFTGVLD 723
BLAST of mRNA_H-canaliculatus_F_contig10694.665.1 vs. uniprot
Match: A0A835YGR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.560e-14 Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 Query: 4 QLFKVATPIIENNFPETQHATYVLPCSGIITMAWKVISSFIDPGTADKIRLVKDFDDPSLLEAFTPETLKAFTSVNPSIAPPQPYVAPDPLA 279 +L ++A P++ENN+PE Q ATYV+P M WKVI++FIDPGTA+KI+LV FD +L E F T++AF + QP+V DPL+ Sbjct: 182 KLLRLAAPLLENNYPERQAATYVVPVGAFTVMTWKVIATFIDPGTANKIKLVPSFDHATLAERFDEATVRAFDAGARDCIFVQPHVEEDPLS 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10694.665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10694.665.1 >prot_H-canaliculatus_F_contig10694.665.1 ID=prot_H-canaliculatus_F_contig10694.665.1|Name=mRNA_H-canaliculatus_F_contig10694.665.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=593bp KQLFKVATPIIENNFPETQHATYVLPCSGIITMAWKVISSFIDPGTADKIback to top mRNA from alignment at H-canaliculatus_F_contig10694:99..3985- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10694.665.1 ID=mRNA_H-canaliculatus_F_contig10694.665.1|Name=mRNA_H-canaliculatus_F_contig10694.665.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3887bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10694:99..3985- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10694:99..3985- >mRNA_H-canaliculatus_F_contig10694.665.1 ID=mRNA_H-canaliculatus_F_contig10694.665.1|Name=mRNA_H-canaliculatus_F_contig10694.665.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10694:99..3985- (Hapterophycus canaliculatus Oshoro5f female)back to top |