mRNA_H-canaliculatus_F_contig10689.659.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10689.659.1
Unique NamemRNA_H-canaliculatus_F_contig10689.659.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10689.659.1 vs. uniprot
Match: D7FVV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV4_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 3.830e-27
Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 3 
Query:  576 DPDHVGLLKQAFQLLWALAMHAPLPLRDMAQGAGMFNTMVNVVSRFYNSVEMEEFQVHKEAMMLMEKMN 782
            D D V LLKQ FQLLWALAMH PLPLRDMAQGAGMFNTMV+VVSRFYNS EMEEFQVHKEAMMLMEKMN
Sbjct:  830 DRDRVELLKQTFQLLWALAMHTPLPLRDMAQGAGMFNTMVSVVSRFYNSAEMEEFQVHKEAMMLMEKMN 898
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BLAST of mRNA_H-canaliculatus_F_contig10689.659.1 vs. uniprot
Match: A0A6H5KY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY04_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.800e-27
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 3 
Query:  576 DPDHVGLLKQAFQLLWALAMHAPLPLRDMAQGAGMFNTMVNVVSRFYNSVEMEEFQVHKEAMMLMEKMN 782
            D D V LLKQAFQLLWALAMH PLPLRDMAQGAGMFNTMV+VVSRFYNS EMEEFQVHKEAMMLMEKM+
Sbjct: 1313 DRDRVELLKQAFQLLWALAMHTPLPLRDMAQGAGMFNTMVSVVSRFYNSAEMEEFQVHKEAMMLMEKMS 1381
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10689.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVV4_ECTSI3.830e-2789.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY04_9PHAE6.800e-2789.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10689contigH-canaliculatus_F_contig10689:1180..4516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002280.1
Exons5
Model size1750
Cds size600
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10689.659.1prot_H-canaliculatus_F_contig10689.659.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10689 2714..4516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.6567538-UTR-H-canaliculatus_F_contig10689:1179..22361622928729.6567538-UTR-H-canaliculatus_F_contig10689:1179..2236Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 1180..2236 -
1696845541.38297-UTR-H-canaliculatus_F_contig10689:1179..22361696845541.38297-UTR-H-canaliculatus_F_contig10689:1179..2236Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 1180..2236 -
1622928729.6738098-UTR-H-canaliculatus_F_contig10689:2621..27131622928729.6738098-UTR-H-canaliculatus_F_contig10689:2621..2713Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 2622..2713 -
1696845541.392003-UTR-H-canaliculatus_F_contig10689:2621..27131696845541.392003-UTR-H-canaliculatus_F_contig10689:2621..2713Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 2622..2713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.6881044-CDS-H-canaliculatus_F_contig10689:2713..27591622928729.6881044-CDS-H-canaliculatus_F_contig10689:2713..2759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 2714..2759 -
1696845541.4013443-CDS-H-canaliculatus_F_contig10689:2713..27591696845541.4013443-CDS-H-canaliculatus_F_contig10689:2713..2759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 2714..2759 -
1622928729.7076442-CDS-H-canaliculatus_F_contig10689:3057..31731622928729.7076442-CDS-H-canaliculatus_F_contig10689:3057..3173Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 3058..3173 -
1696845541.4258492-CDS-H-canaliculatus_F_contig10689:3057..31731696845541.4258492-CDS-H-canaliculatus_F_contig10689:3057..3173Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 3058..3173 -
1622928729.7224035-CDS-H-canaliculatus_F_contig10689:3633..37551622928729.7224035-CDS-H-canaliculatus_F_contig10689:3633..3755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 3634..3755 -
1696845541.488163-CDS-H-canaliculatus_F_contig10689:3633..37551696845541.488163-CDS-H-canaliculatus_F_contig10689:3633..3755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 3634..3755 -
1622928729.7386842-CDS-H-canaliculatus_F_contig10689:4200..45161622928729.7386842-CDS-H-canaliculatus_F_contig10689:4200..4516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 4201..4516 -
1696845541.509164-CDS-H-canaliculatus_F_contig10689:4200..45161696845541.509164-CDS-H-canaliculatus_F_contig10689:4200..4516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 4201..4516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10689.659.1

>prot_H-canaliculatus_F_contig10689.659.1 ID=prot_H-canaliculatus_F_contig10689.659.1|Name=mRNA_H-canaliculatus_F_contig10689.659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=200bp
ELGVEVLAVLLRNASLFRAIAVCDNDDDDHDEEADANPDARGQQRISPAG
QPLFSEMVTAAAAGDSGDGGVGGVSAAKSNAGTEATTSEAGTAAASTAGQ
GAGDAGGNRAGEEGWDNKGFEDFGDSLLRRLCLDAVAVGEHAPFHENARL
RLAVVRLVFGACQTYGAVAAQALFGDDCFCREDQGSHSSMPSIPTMSDS*
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mRNA from alignment at H-canaliculatus_F_contig10689:1180..4516-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10689.659.1 ID=mRNA_H-canaliculatus_F_contig10689.659.1|Name=mRNA_H-canaliculatus_F_contig10689.659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3337bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10689:1180..4516- (Hapterophycus canaliculatus Oshoro5f female)
GAGCTCGGTGTGGAGGTTCTCGCTGTCCTGCTGCGCAACGCTTCCCTCTT
CCGAGCGATCGCCGTATGCGACAACGACGACGACGATCACGACGAGGAGG
CCGATGCCAACCCGGACGCACGTGGACAGCAACGAATATCGCCCGCAGGA
CAGCCTTTGTTTTCGGAGATGGTGACAGCTGCCGCTGCTGGAGATAGCGG
AGACGGCGGAGTTGGCGGCGTGTCGGCGGCGAAGTCGAACGCAGGGACGG
AAGCAACGACGTCGGAAGCGGGGACAGCAGCGGCGTCGACGGCCGGGCAA
GGCGCTGGTGATGCTGGTGAGAGAGAGCCGGACGCGCAGATGCAGGACGG
GGACGTTTGTGGGGGCACGGAGGCCCCGATTAGATCTTGAAAAACAGAGT
GGAAGAGGCAGATATCGTCATCATCATGAATGCGAACAAAGCAGGAAAGG
CGAGAGTATTGGCGAGAGACGGAGGCTGGCAGTTAGTTGAGTAAAAATTG
TGAGGAAGAGGGATCGGGTGAGAGCTGGGTAGTTTTTTTAGACGGTTGGC
CGCATATGGTTCAGGTCGGGGGGGGAGGTAGTGGAAGGAACTCTTTGCAT
ACCTTTATGCACAGTGATTGTGGGGTAACCATGGCGTTGCTTTGAGTCAA
CAGTTCCAAGAGCACGCTCGAAGACATGTTATTTTCGCTCAAGCCTTCGG
TGGCGGATGCTTCATTTTTCGAATCGGTGGAACCCCCTCGCGAAATGCTC
ACCGCCTTCAGGTGGAAATCGCGCGGGAGAGGAAGGCTGGGACAACAAGG
GTTTCGAGGATTTCGGAGACTCGTTGCTGCGCCGCCTCTGCTTGGACGCA
GTGGCGGTCGGAGAACACGCCCCTTTCCACGAGGTCAGGCGCCTTCGGGT
TCCTTTCTCTTGAAAAGATCGGGCAGTGTTCAGGGGCGTGCACGTTCGTT
GGATATGATTTTTTTTTCAGGAAGATTGGGTGTGCTATTCGATCTATCCA
GCGCTTGCGCACGGCTTCGGATTTCGGCTAACCATGCGTGTGCCTAAATG
ATACTTTGTAAGTTCTTCGCAAGCCGCTCAGGATGGCTCCCACCGAATGG
TTCATCGCCAATCGTATCTAGCCCACGAGTTTTGACAACCAGGCTTGCTT
TTGATACGCGGAACTGTTATTGGTGTTGTTGGTGTCGTTGATGTTGTTGA
TGTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTCGTCGTCGTGC
TCGTTTCCGTTCATTCTTCCCGCGTGGGCTTCTTACTTCTTGACATGGAT
TGACCCCAAGCCCCCCCCCCCTCCCCCCATTTATTTTTTCCAGAACGCCA
GGCTCCGGCTTGCTGTCGTCCGGCTCGTGTTCGGCGCTTGCCAGACCTAC
GGCGCAGTGGCCGCCCAAGCCCTCTTCGGAGATGACTGCTTCTGTAGAGA
AGACCAAGGGCAAGTGGTGATAGGCGGGAGCGGCGGTGGACAGTCGTCGG
GGGGGGTGCGAGCAGAGGGGATGGCGGCGGCGGGATACGGGGGGGACGAC
GGGTGTCACCTGATCCCTGCGCTTGTGAATTTCCTCCGGCTAGAGCTCGA
GGACTGGGAGAGGCGACGATACTCCGAGGTTCGTGCGTACTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGACGCCGCTGCTGCTACCGCTGCCATGCTTGA
CGTTGCTGTTGCTCTCGCCGCGCTCGACGTCGTCATCGCACTGTCCGTCC
TGCACAGGTCGCACTCATCGATGCCATCGATCCCGACCATGTCGGACTCC
TGAAGCAGGCCTTCCAGCTCCTCTGGGCGCTTGCGATGCACGCGCCGCTC
CCTCTGAGGGACATGGCCCAGGGCGCAGGAATGTTCAACACCATGGTGCG
TACGGGAAGGCTTGATTGCAAATCTGCGTGGTGGCTCCAGACGCTGAACC
ATAACGAACGGATTACACCAGCGTGACAGCGTCGCCTAGACACCCTGGTT
GGCATTGTTGTGGATCATTTGGTGGGGTTTCCATCTGTATCGACGCGTGC
GTAACGAGGGACGCCCTTGGCTACACCGATTTTCGAAAGCCGACATTTCG
GCAGTCGAAATGTACATGAAGTGCTTATGGTTTATGCTGTTGGCGTGTCG
GGACGTCCGCCTCCGACCAAGGTTCCCGCACATACCAAACGATGCGAGAT
GGTCGGACGATTCTCTCTCCCTCCCTCTCCCTCTCTCTCTCTATCTCTCT
CTCTCTCTTGAATCGGCTTAATCGGAACAGGTGAACGTGGTGTCCCGGTT
CTACAACAGCGTCGAGATGGAGGAGTTCCAAGTACACAAGGAGGCCATGA
TGCTCATGGAGAAGATGAACTGAGTCGAGCTGGACTCGTGCGGTTTTCGG
AGGGGTCCTAGGTATGGTGTGGCCGAGTGACGGAAACTGTCCCTTTTTCC
GTTGGAGACACTGGCCGGATGCTGCCCTTGGGTAAGAGCAGAAAATACCT
GGTTCAGAGACGCCGAAAGCACGTTGTTGGAACCATCTTGGTTGTGCACT
CGACGCTATCGTGTTTTGCGTCGGATTCGTGCTGTGCTTCTGCTGTGCTG
TTCTGTGCCGTGCTGTGCTTGTCACAGGATCACGAGAAAAATGTTGTGCT
GTTCATACTGCCGGGGCTAGGCTTGCTTTGCCCGCGCACGCATCACGAAT
GAACGCTAGAGTTGTGCCACGAGTCTCATCGTGTGCAATGTGTTGTATGT
TGCTTCTCCTGAGATGGTTCACACCGTCTTAGCCTGATTCCCGCAGAGAC
GTGGCCCGCAGAGACACGTACTTGGGCGCTGAGCCTCTGGCTTGTTTCAG
AGCGCTAGTTGACGGTGAAGCCGGAACCGCACTACGAGTAGCTTTGTCTT
TTCGTCCGTCGGTGGCAGCATTTTCTTCTTCCATGTTGCGTGGCATTCCG
TATGCAGGTTACTAGAGTCTACCTCTATGGTTGTGGATTGTGGATGATCC
ATCGTCATGGAGGCAACGCATTGATTCCCCGCCGGTACCCCCACTTGAGG
CGTGTGTGTTGTGGTGAGCGATTGGCGCGGGTGAGGTCTCGCCAGGTGTT
GCGTAGACACTTGTATATCTAGGCGGAGGGATCTGTTTTGTCGAGGAACA
AGCAGAGGAAATTGTCTCCGCGATGGGTGGGTCCCTTCTCCCGAATCACC
CGGAGGGTACAGTATGATTAATTTTTTTTCGGAGGACGGCAACGGATGGC
AACCGGTCAAATACGCTGCGCTGGGTGTGGAGCCCAAGTGCAAGGCTTGT
TCCAGGACGCCGCGTCCTACACTACACCACCCTGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10689:1180..4516-

>mRNA_H-canaliculatus_F_contig10689.659.1 ID=mRNA_H-canaliculatus_F_contig10689.659.1|Name=mRNA_H-canaliculatus_F_contig10689.659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1200bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10689:1180..4516- (Hapterophycus canaliculatus Oshoro5f female)
GAGCTCGGTGTGGAGGTTCTCGCTGTCCTGCTGCGCAACGCTTCCCTCTT
CCGAGCGATCGCCGTATGCGACAACGACGACGACGATCACGACGAGGAGG
CCGATGCCAACCCGGACGCACGTGGACAGCAACGAATATCGCCCGCAGGA
CAGCCTTTGTTTTCGGAGATGGTGACAGCTGCCGCTGCTGGAGATAGCGG
AGACGGCGGAGTTGGCGGCGTGTCGGCGGCGAAGTCGAACGCAGGGACGG
AAGCAACGACGTCGGAAGCGGGGACAGCAGCGGCGTCGACGGCCGGGCAA
GGCGCTGGTGATGCTGGAGCTCGGTGTGGAGGTTCTCGCTGTCCTGCTGC
GCAACGCTTCCCTCTTCCGAGCGATCGCCGTATGCGACAACGACGACGAC
GATCACGACGAGGAGGCCGATGCCAACCCGGACGCACGTGGACAGCAACG
AATATCGCCCGCAGGACAGCCTTTGTTTTCGGAGATGGTGACAGCTGCCG
CTGCTGGAGATAGCGGAGACGGCGGAGTTGGCGGCGTGTCGGCGGCGAAG
TCGAACGCAGGGACGGAAGCAACGACGTCGGAAGCGGGGACAGCAGCGGC
GTCGACGGCCGGGCAAGGCGCTGGTGATGCTGGTGGAAATCGCGCGGGAG
AGGAAGGCTGGGACAACAAGGGTTTCGAGGATTTCGGAGACTCGTTGCTG
CGCCGCCTCTGCTTGGACGCAGTGGCGGTCGGAGAACACGCCCCTTTCCA
CGAGGTGGAAATCGCGCGGGAGAGGAAGGCTGGGACAACAAGGGTTTCGA
GGATTTCGGAGACTCGTTGCTGCGCCGCCTCTGCTTGGACGCAGTGGCGG
TCGGAGAACACGCCCCTTTCCACGAGAACGCCAGGCTCCGGCTTGCTGTC
GTCCGGCTCGTGTTCGGCGCTTGCCAGACCTACGGCGCAGTGGCCGCCCA
AGCCCTCTTCGGAGATGACTGCTTCTGTAGAGAAGACCAAGGAACGCCAG
GCTCCGGCTTGCTGTCGTCCGGCTCGTGTTCGGCGCTTGCCAGACCTACG
GCGCAGTGGCCGCCCAAGCCCTCTTCGGAGATGACTGCTTCTGTAGAGAA
GACCAAGGGTCGCACTCATCGATGCCATCGATCCCGACCATGTCGGACTC
CTGAGTCGCACTCATCGATGCCATCGATCCCGACCATGTCGGACTCCTGA
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