mRNA_H-canaliculatus_F_contig10689.658.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10689.658.1
Unique NamemRNA_H-canaliculatus_F_contig10689.658.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10689.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10689contigH-canaliculatus_F_contig10689:490..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10689.658.1prot_H-canaliculatus_F_contig10689.658.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10689 557..940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.5799093-UTR-H-canaliculatus_F_contig10689:489..5561622928729.5799093-UTR-H-canaliculatus_F_contig10689:489..556Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 490..556 +
1696845541.3585835-UTR-H-canaliculatus_F_contig10689:489..5561696845541.3585835-UTR-H-canaliculatus_F_contig10689:489..556Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 490..556 +
1622928729.6053622-UTR-H-canaliculatus_F_contig10689:940..10561622928729.6053622-UTR-H-canaliculatus_F_contig10689:940..1056Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 941..1056 +
1696845541.373676-UTR-H-canaliculatus_F_contig10689:940..10561696845541.373676-UTR-H-canaliculatus_F_contig10689:940..1056Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10689 941..1056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.5935209-CDS-H-canaliculatus_F_contig10689:556..9401622928729.5935209-CDS-H-canaliculatus_F_contig10689:556..940Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 557..940 +
1696845541.3662014-CDS-H-canaliculatus_F_contig10689:556..9401696845541.3662014-CDS-H-canaliculatus_F_contig10689:556..940Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10689 557..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10689.658.1

>prot_H-canaliculatus_F_contig10689.658.1 ID=prot_H-canaliculatus_F_contig10689.658.1|Name=mRNA_H-canaliculatus_F_contig10689.658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MLLREAAHRGVECGAGSPRNAYHPSAGYPGCGEHEKLLLYGVVIRSKEIR
GSSHARLCCCSRVRSAGSAEMGRVGGRTEAVAYAVVRPQECYSIKDLINP
NLVEPSIVVLGFLWKTPFRAARSGERK*
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mRNA from alignment at H-canaliculatus_F_contig10689:490..1056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10689.658.1 ID=mRNA_H-canaliculatus_F_contig10689.658.1|Name=mRNA_H-canaliculatus_F_contig10689.658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=567bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10689:490..1056+ (Hapterophycus canaliculatus Oshoro5f female)
TCTGCCGCGCTCCCTCCGTCGCTCTCTTCAAGAAGGTCGACTTCAACGAA
GCAAGCATCCGTGTTTGATGCTGCTCCGAGAAGCAGCACATAGAGGGGTA
GAATGTGGCGCTGGTAGCCCTCGAAATGCATATCATCCGTCGGCTGGTTA
CCCTGGTTGCGGCGAACATGAAAAACTACTGCTGTATGGGGTTGTAATTC
GATCGAAGGAAATTCGGGGGTCGTCGCACGCAAGGCTCTGCTGTTGCAGC
AGGGTTCGAAGCGCAGGCAGCGCGGAGATGGGCAGGGTGGGGGGACGAAC
CGAGGCTGTAGCGTACGCCGTTGTTCGTCCACAAGAATGCTACTCCATCA
AGGACCTGATAAATCCGAATCTGGTAGAACCGTCCATCGTCGTTCTAGGG
TTTTTGTGGAAAACGCCATTCCGCGCTGCGCGCTCGGGCGAGAGGAAATG
ATGAAAGACTGAAACGGATGTCGTGGGCTGTGGGAGATTCCACAAACGGA
TAAGCACGGGCTGTGGTTGTATATATGGGTGGAACATCGGGCGAGCGGCG
TTGCAAGTTCACTCTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10689:490..1056+

>mRNA_H-canaliculatus_F_contig10689.658.1 ID=mRNA_H-canaliculatus_F_contig10689.658.1|Name=mRNA_H-canaliculatus_F_contig10689.658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10689:490..1056+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCTCCGAGAAGCAGCACATAGAGGGGTAGAATGTGGCGCTGGTAG
CCCTCGAAATGCATATCATCCGTCGGCTGGTTACCCTGGTTGCGGCGAAC
ATGAAAAACTACTGCTGTATGGGGTTGTAATTCGATCGAAGGAAATTCGG
GGGTCGTCGCACGCAAGGCTCTGCTGTTGCAGCAGGGTTCGAAGCGCAGG
CAGCGCGGAGATGGGCAGGGTGGGGGGACGAACCGAGGCTGTAGCGTACG
CCGTTGTTCGTCCACAAGAATGCTACTCCATCAAGGACCTGATAAATCCG
AATCTGGTAGAACCGTCCATCGTCGTTCTAGGGTTTTTGTGGAAAACGCC
ATTCCGCGCTGCGCGCTCGGGCGAGAGGAAATGAATGCTGCTCCGAGAAG
CAGCACATAGAGGGGTAGAATGTGGCGCTGGTAGCCCTCGAAATGCATAT
CATCCGTCGGCTGGTTACCCTGGTTGCGGCGAACATGAAAAACTACTGCT
GTATGGGGTTGTAATTCGATCGAAGGAAATTCGGGGGTCGTCGCACGCAA
GGCTCTGCTGTTGCAGCAGGGTTCGAAGCGCAGGCAGCGCGGAGATGGGC
AGGGTGGGGGGACGAACCGAGGCTGTAGCGTACGCCGTTGTTCGTCCACA
AGAATGCTACTCCATCAAGGACCTGATAAATCCGAATCTGGTAGAACCGT
CCATCGTCGTTCTAGGGTTTTTGTGGAAAACGCCATTCCGCGCTGCGCGC
TCGGGCGAGAGGAAATGA
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