mRNA_H-canaliculatus_F_contig10679.649.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10679.649.1
Unique NamemRNA_H-canaliculatus_F_contig10679.649.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10679.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10679contigH-canaliculatus_F_contig10679:1609..2625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.15463-CDS-H-canaliculatus_F_contig10679:1608..18261622928728.15463-CDS-H-canaliculatus_F_contig10679:1608..1826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10679 1609..1826 -
1696845540.792666-CDS-H-canaliculatus_F_contig10679:1608..18261696845540.792666-CDS-H-canaliculatus_F_contig10679:1608..1826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10679 1609..1826 -
1622928728.2215347-CDS-H-canaliculatus_F_contig10679:2552..26251622928728.2215347-CDS-H-canaliculatus_F_contig10679:2552..2625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10679 2553..2625 -
1696845540.8010776-CDS-H-canaliculatus_F_contig10679:2552..26251696845540.8010776-CDS-H-canaliculatus_F_contig10679:2552..2625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10679 2553..2625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10679.649.1prot_H-canaliculatus_F_contig10679.649.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10679 1609..2625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10679.649.1

>prot_H-canaliculatus_F_contig10679.649.1 ID=prot_H-canaliculatus_F_contig10679.649.1|Name=mRNA_H-canaliculatus_F_contig10679.649.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
ATSLHPWRCPGLLLTASAVLIVSVRGGRFGGRGTRTEGPVPAASDEMLWI
DENEGGCRAFESGARRGGAERLVVVVMLVAETVAIVVRRVRTSSDG*
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mRNA from alignment at H-canaliculatus_F_contig10679:1609..2625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10679.649.1 ID=mRNA_H-canaliculatus_F_contig10679.649.1|Name=mRNA_H-canaliculatus_F_contig10679.649.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1017bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10679:1609..2625- (Hapterophycus canaliculatus Oshoro5f female)
GCGACGTCACTGCACCCGTGGCGGTGTCCGGGGCTGCTGCTGACTGCTTC
CGCTGTGCTGATCGTATCGGTGAGCGGCCGGGACACGTCGGATTTGGCGT
GCGTGAACGAGTCGATCGATGTCTCTGAGCCTGCTTGGGGGTAGTCGGTG
AAATACGACTTGGAGAGCGCTTTCCGTGTGGCTGCCCGCCGGTGCGACAG
CAGGCCATCGTGCCTATCAGCGGCAGAGATGCTCCAGGCATGGGGTGTGA
GCAGTCCGATTTGTGTGTTGATGTGTGCCTGAAATGGTCGGTGAAGCCTG
CATGACGAGCTTTACTCGTGTGACTGCCGCTGGGACAGGCGTTGGTGTCG
GTGAATGGCAAGAAGAGTTTACGCACGGTCTGTGAAAAAGTAGATCGACA
AGCGTGTTCTGCGTGTCCTCGGGGGATGCGGCGAAGGCCTAGGATGGAGT
TGGATTTTGCATGCGTGCGGCTAATCGGTGCTGCTTTGAAACGGAGGTAG
AGCAGTACCACACAGCCTAAGTATACTTTTCGCTCACATGATTCAAAATC
CTGTCTACGCCGATCGGCGGTAGCCGTCCGCCCACCGTGCGGTTGCCCCC
GGCAAGAGCAAGGCAGCTGTGGCAGATTTAGACACGGGGGATCTGTCTGC
CATGTTGTGCACACTTCGGTCCTCGGCAAACCCCGAAGATTCTCGAAAAG
CATTCGCACGGAACATTGGTGCGCAAACTCTCCCCTACTTCGTCCTCCCC
TTCTTCGTCCGCCGTGCTCCGCACAATGTCGACTTCCGCGAATTCCAAGG
GGGAGGAAGATTTGGTGGCCGTGGAACAAGGACTGAAGGGCCGGTTCCAG
CTGCTAGCGACGAGATGCTTTGGATCGACGAGAATGAGGGAGGTTGTCGT
GCTTTCGAAAGCGGCGCTAGGCGGGGCGGAGCGGAGCGGTTGGTGGTCGT
GGTGATGCTGGTCGCGGAAACGGTGGCCATTGTGGTCCGGCGGGTGCGAA
CGTCGTCGGATGGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10679:1609..2625-

>mRNA_H-canaliculatus_F_contig10679.649.1 ID=mRNA_H-canaliculatus_F_contig10679.649.1|Name=mRNA_H-canaliculatus_F_contig10679.649.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10679:1609..2625- (Hapterophycus canaliculatus Oshoro5f female)
GCGACGTCACTGCACCCGTGGCGGTGTCCGGGGCTGCTGCTGACTGCTTC
CGCTGTGCTGATCGTATCGGTGAGCGACGTCACTGCACCCGTGGCGGTGT
CCGGGGCTGCTGCTGACTGCTTCCGCTGTGCTGATCGTATCGGTGAGGGG
AGGAAGATTTGGTGGCCGTGGAACAAGGACTGAAGGGCCGGTTCCAGCTG
CTAGCGACGAGATGCTTTGGATCGACGAGAATGAGGGAGGTTGTCGTGCT
TTCGAAAGCGGCGCTAGGCGGGGCGGAGCGGAGCGGTTGGTGGTCGTGGT
GATGCTGGTCGCGGAAACGGTGGCCATTGTGGTCCGGCGGGTGCGAACGT
CGTCGGATGGCTAGGGGGAGGAAGATTTGGTGGCCGTGGAACAAGGACTG
AAGGGCCGGTTCCAGCTGCTAGCGACGAGATGCTTTGGATCGACGAGAAT
GAGGGAGGTTGTCGTGCTTTCGAAAGCGGCGCTAGGCGGGGCGGAGCGGA
GCGGTTGGTGGTCGTGGTGATGCTGGTCGCGGAAACGGTGGCCATTGTGG
TCCGGCGGGTGCGAACGTCGTCGGATGGCTAG
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