mRNA_H-canaliculatus_F_contig10675.646.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10675.646.1
Unique NamemRNA_H-canaliculatus_F_contig10675.646.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10675.646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10675contigH-canaliculatus_F_contig10675:1486..2468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size985
Cds size978
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928727.949021-UTR-H-canaliculatus_F_contig10675:1485..14901622928727.949021-UTR-H-canaliculatus_F_contig10675:1485..1490Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10675 1486..1490 +
1696845540.713015-UTR-H-canaliculatus_F_contig10675:1485..14901696845540.713015-UTR-H-canaliculatus_F_contig10675:1485..1490Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10675 1486..1490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928727.9639537-CDS-H-canaliculatus_F_contig10675:1490..24681622928727.9639537-CDS-H-canaliculatus_F_contig10675:1490..2468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10675 1491..2468 +
1696845540.7239883-CDS-H-canaliculatus_F_contig10675:1490..24681696845540.7239883-CDS-H-canaliculatus_F_contig10675:1490..2468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10675 1491..2468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10675.646.1prot_H-canaliculatus_F_contig10675.646.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10675 1491..2468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10675.646.1

>prot_H-canaliculatus_F_contig10675.646.1 ID=prot_H-canaliculatus_F_contig10675.646.1|Name=mRNA_H-canaliculatus_F_contig10675.646.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=326bp
MQPLQPEKVEAAPAVVFDGAALQPVQAEKAEAAPTAVSNGPAALGNGAGR
VPSLAEALFGDDDDDDDDDDNEHEDEAAANPTAVGVDARREAMVEARPAR
PEVDGGGGGSSSSSGSGERSNPQAAPAGLRPAATTAASSASSAASAAAVI
APVSPAVIIAGRNQVAPSWPPACPPKESARKERRGGGASGKAAVGEKVAA
TRAKEAEVAATLAGLAGAGHNSRDDADVDATEIERRRDRDGGSGGAKKRP
RSPPPSRGEEQGTAGVGNGRAAGAVRVRLGPSPPARATPPPANIGTATTA
NAAITTATTAATADATSTTALPVPLA
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mRNA from alignment at H-canaliculatus_F_contig10675:1486..2468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10675.646.1 ID=mRNA_H-canaliculatus_F_contig10675.646.1|Name=mRNA_H-canaliculatus_F_contig10675.646.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=983bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10675:1486..2468+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCGATGCAGCCGTTGCAGCCTGAGAAGGTCGAAGCCGCTCCCGCGGTC
GTCTTCGACGGCGCGGCGTTGCAGCCGGTGCAGGCTGAGAAAGCCGAAGC
CGCTCCCACGGCCGTCTCGAACGGCCCGGCGGCTCTAGGAAACGGCGCGG
GTCGGGTGCCGTCCTTGGCGGAAGCTCTTTTTGGTGATGATGATGACGAC
GACGATGACGACGACAACGAGCACGAAGACGAAGCAGCCGCAAACCCGAC
GGCGGTAGGAGTGGATGCACGACGAGAAGCGATGGTCGAGGCCCGGCCCG
CTCGGCCGGAGGTAGATGGCGGCGGTGGCGGCAGCAGCAGCAGCAGCGGC
AGCGGAGAGAGGTCCAATCCACAAGCTGCTCCTGCTGGCCTTCGCCCTGC
TGCTACTACCGCTGCTTCTTCGGCCTCTTCTGCTGCTTCCGCCGCTGCTG
TCATCGCGCCGGTTTCGCCCGCTGTCATCATCGCCGGAAGGAACCAAGTG
GCGCCCTCTTGGCCGCCTGCTTGCCCGCCAAAAGAATCGGCGCGAAAAGA
AAGGCGCGGCGGAGGTGCGTCAGGGAAGGCGGCGGTGGGCGAGAAGGTGG
CGGCCACCAGGGCAAAGGAAGCCGAGGTCGCGGCAACGCTAGCAGGGCTA
GCTGGAGCAGGCCACAACAGCAGAGACGATGCCGACGTCGATGCGACCGA
GATCGAGCGAAGAAGAGACCGCGATGGCGGCAGCGGTGGGGCGAAGAAGA
GACCGCGTTCTCCTCCTCCGTCCCGAGGAGAGGAGCAGGGAACAGCGGGC
GTGGGAAACGGCCGCGCCGCCGGTGCCGTCCGGGTCCGGTTGGGCCCGTC
GCCCCCGGCGCGGGCGACGCCACCACCGGCGAACATCGGCACCGCTACCA
CCGCCAACGCCGCCATCACCACCGCCACCACTGCCGCCACTGCTGACGCC
ACCAGCACGACGGCCCTGCCAGTACCTCTCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10675:1486..2468+

>mRNA_H-canaliculatus_F_contig10675.646.1 ID=mRNA_H-canaliculatus_F_contig10675.646.1|Name=mRNA_H-canaliculatus_F_contig10675.646.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1956bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10675:1486..2468+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCCGTTGCAGCCTGAGAAGGTCGAAGCCGCTCCCGCGGTCGTCTT
CGACGGCGCGGCGTTGCAGCCGGTGCAGGCTGAGAAAGCCGAAGCCGCTC
CCACGGCCGTCTCGAACGGCCCGGCGGCTCTAGGAAACGGCGCGGGTCGG
GTGCCGTCCTTGGCGGAAGCTCTTTTTGGTGATGATGATGACGACGACGA
TGACGACGACAACGAGCACGAAGACGAAGCAGCCGCAAACCCGACGGCGG
TAGGAGTGGATGCACGACGAGAAGCGATGGTCGAGGCCCGGCCCGCTCGG
CCGGAGGTAGATGGCGGCGGTGGCGGCAGCAGCAGCAGCAGCGGCAGCGG
AGAGAGGTCCAATCCACAAGCTGCTCCTGCTGGCCTTCGCCCTGCTGCTA
CTACCGCTGCTTCTTCGGCCTCTTCTGCTGCTTCCGCCGCTGCTGTCATC
GCGCCGGTTTCGCCCGCTGTCATCATCGCCGGAAGGAACCAAGTGGCGCC
CTCTTGGCCGCCTGCTTGCCCGCCAAAAGAATCGGCGCGAAAAGAAAGGC
GCGGCGGAGGTGCGTCAGGGAAGGCGGCGGTGGGCGAGAAGGTGGCGGCC
ACCAGGGCAAAGGAAGCCGAGGTCGCGGCAACGCTAGCAGGGCTAGCTGG
AGCAGGCCACAACAGCAGAGACGATGCCGACGTCGATGCGACCGAGATCG
AGCGAAGAAGAGACCGCGATGGCGGCAGCGGTGGGGCGAAGAAGAGACCG
CGTTCTCCTCCTCCGTCCCGAGGAGAGGAGCAGGGAACAGCGGGCGTGGG
AAACGGCCGCGCCGCCGGTGCCGTCCGGGTCCGGTTGGGCCCGTCGCCCC
CGGCGCGGGCGACGCCACCACCGGCGAACATCGGCACCGCTACCACCGCC
AACGCCGCCATCACCACCGCCACCACTGCCGCCACTGCTGACGCCACCAG
CACGACGGCCCTGCCAGTACCTCTCGCGATGCAGCCGTTGCAGCCTGAGA
AGGTCGAAGCCGCTCCCGCGGTCGTCTTCGACGGCGCGGCGTTGCAGCCG
GTGCAGGCTGAGAAAGCCGAAGCCGCTCCCACGGCCGTCTCGAACGGCCC
GGCGGCTCTAGGAAACGGCGCGGGTCGGGTGCCGTCCTTGGCGGAAGCTC
TTTTTGGTGATGATGATGACGACGACGATGACGACGACAACGAGCACGAA
GACGAAGCAGCCGCAAACCCGACGGCGGTAGGAGTGGATGCACGACGAGA
AGCGATGGTCGAGGCCCGGCCCGCTCGGCCGGAGGTAGATGGCGGCGGTG
GCGGCAGCAGCAGCAGCAGCGGCAGCGGAGAGAGGTCCAATCCACAAGCT
GCTCCTGCTGGCCTTCGCCCTGCTGCTACTACCGCTGCTTCTTCGGCCTC
TTCTGCTGCTTCCGCCGCTGCTGTCATCGCGCCGGTTTCGCCCGCTGTCA
TCATCGCCGGAAGGAACCAAGTGGCGCCCTCTTGGCCGCCTGCTTGCCCG
CCAAAAGAATCGGCGCGAAAAGAAAGGCGCGGCGGAGGTGCGTCAGGGAA
GGCGGCGGTGGGCGAGAAGGTGGCGGCCACCAGGGCAAAGGAAGCCGAGG
TCGCGGCAACGCTAGCAGGGCTAGCTGGAGCAGGCCACAACAGCAGAGAC
GATGCCGACGTCGATGCGACCGAGATCGAGCGAAGAAGAGACCGCGATGG
CGGCAGCGGTGGGGCGAAGAAGAGACCGCGTTCTCCTCCTCCGTCCCGAG
GAGAGGAGCAGGGAACAGCGGGCGTGGGAAACGGCCGCGCCGCCGGTGCC
GTCCGGGTCCGGTTGGGCCCGTCGCCCCCGGCGCGGGCGACGCCACCACC
GGCGAACATCGGCACCGCTACCACCGCCAACGCCGCCATCACCACCGCCA
CCACTGCCGCCACTGCTGACGCCACCAGCACGACGGCCCTGCCAGTACCT
CTCGCG
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