mRNA_H-canaliculatus_F_contig10672.644.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10672.644.1
Unique NamemRNA_H-canaliculatus_F_contig10672.644.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10672.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10672contigH-canaliculatus_F_contig10672:2482..2861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size301
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10672.644.1prot_H-canaliculatus_F_contig10672.644.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10672 2620..2861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928726.05042-UTR-H-canaliculatus_F_contig10672:2481..25451622928726.05042-UTR-H-canaliculatus_F_contig10672:2481..2545Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10672 2482..2545 -
1696845540.6468387-UTR-H-canaliculatus_F_contig10672:2481..25451696845540.6468387-UTR-H-canaliculatus_F_contig10672:2481..2545Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10672 2482..2545 -
1622928726.0618525-UTR-H-canaliculatus_F_contig10672:2609..26191622928726.0618525-UTR-H-canaliculatus_F_contig10672:2609..2619Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10672 2610..2619 -
1696845540.660032-UTR-H-canaliculatus_F_contig10672:2609..26191696845540.660032-UTR-H-canaliculatus_F_contig10672:2609..2619Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10672 2610..2619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928726.0717921-CDS-H-canaliculatus_F_contig10672:2619..26471622928726.0717921-CDS-H-canaliculatus_F_contig10672:2619..2647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10672 2620..2647 -
1696845540.6756382-CDS-H-canaliculatus_F_contig10672:2619..26471696845540.6756382-CDS-H-canaliculatus_F_contig10672:2619..2647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10672 2620..2647 -
1622928726.0841343-CDS-H-canaliculatus_F_contig10672:2664..28611622928726.0841343-CDS-H-canaliculatus_F_contig10672:2664..2861Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10672 2665..2861 -
1696845540.688716-CDS-H-canaliculatus_F_contig10672:2664..28611696845540.688716-CDS-H-canaliculatus_F_contig10672:2664..2861Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10672 2665..2861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10672.644.1

>prot_H-canaliculatus_F_contig10672.644.1 ID=prot_H-canaliculatus_F_contig10672.644.1|Name=mRNA_H-canaliculatus_F_contig10672.644.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
KYPSSSFATRLLHQGAARDLTTIFSKGRLVKHQPRSGFVNERVSCTTTAF
PFPTSPSSKTINGPDLLVCLCVCV*
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mRNA from alignment at H-canaliculatus_F_contig10672:2482..2861-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10672.644.1 ID=mRNA_H-canaliculatus_F_contig10672.644.1|Name=mRNA_H-canaliculatus_F_contig10672.644.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=380bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10672:2482..2861- (Hapterophycus canaliculatus Oshoro5f female)
AAATATCCTTCCTCCTCCTTTGCAACACGCCTTCTTCACCAGGGTGCAGC
ACGCGATCTTACAACCATATTTTCCAAGGGTAGACTAGTGAAGCACCAGC
CCCGTAGTGGCTTTGTCAATGAAAGGGTGAGCTGCACAACAACAGCGTTT
CCCTTCCCTACCTCCCCTTCATCAAAGACAATCAACGGACCAGACTTGTC
AGTCAACGGACCAGACTTGTGTGTTTGTGCGTGTGTGTGTAGACGTAGTG
AAGCAGTCCCAACCCCCCCCCCCCCCCCCCGCCCCACGGAGCAACACTGC
TTCACTTCGAGTGAAGACACACAAAAACACACGCGTTCGGTCCATTCATT
ATCATCACATCATTCTCCATCGCTGAAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10672:2482..2861-

>mRNA_H-canaliculatus_F_contig10672.644.1 ID=mRNA_H-canaliculatus_F_contig10672.644.1|Name=mRNA_H-canaliculatus_F_contig10672.644.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10672:2482..2861- (Hapterophycus canaliculatus Oshoro5f female)
AAATATCCTTCCTCCTCCTTTGCAACACGCCTTCTTCACCAGGGTGCAGC
ACGCGATCTTACAACCATATTTTCCAAGGGTAGACTAGTGAAGCACCAGC
CCCGTAGTGGCTTTGTCAATGAAAGGGTGAGCTGCACAACAACAGCGTTT
CCCTTCCCTACCTCCCCTTCATCAAAGACAATCAACGGACCAGACTTAAA
TATCCTTCCTCCTCCTTTGCAACACGCCTTCTTCACCAGGGTGCAGCACG
CGATCTTACAACCATATTTTCCAAGGGTAGACTAGTGAAGCACCAGCCCC
GTAGTGGCTTTGTCAATGAAAGGGTGAGCTGCACAACAACAGCGTTTCCC
TTCCCTACCTCCCCTTCATCAAAGACAATCAACGGACCAGACTTACTTGT
GTGTTTGTGCGTGTGTGTGTAGACTTGTGTGTTTGTGCGTGTGTGTGTAG
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