mRNA_H-canaliculatus_F_contig10664.637.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10664.637.1
Unique NamemRNA_H-canaliculatus_F_contig10664.637.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10664.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10664contigH-canaliculatus_F_contig10664:1329..2069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10664.637.1prot_H-canaliculatus_F_contig10664.637.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10664 1509..2030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928723.5009325-UTR-H-canaliculatus_F_contig10664:1328..15081622928723.5009325-UTR-H-canaliculatus_F_contig10664:1328..1508Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10664 1329..1508 +
1696845540.1216342-UTR-H-canaliculatus_F_contig10664:1328..15081696845540.1216342-UTR-H-canaliculatus_F_contig10664:1328..1508Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10664 1329..1508 +
1622928723.5434697-UTR-H-canaliculatus_F_contig10664:2030..20691622928723.5434697-UTR-H-canaliculatus_F_contig10664:2030..2069Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10664 2031..2069 +
1696845540.142198-UTR-H-canaliculatus_F_contig10664:2030..20691696845540.142198-UTR-H-canaliculatus_F_contig10664:2030..2069Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10664 2031..2069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928723.5212753-CDS-H-canaliculatus_F_contig10664:1508..20301622928723.5212753-CDS-H-canaliculatus_F_contig10664:1508..2030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10664 1509..2030 +
1696845540.130993-CDS-H-canaliculatus_F_contig10664:1508..20301696845540.130993-CDS-H-canaliculatus_F_contig10664:1508..2030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10664 1509..2030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10664.637.1

>prot_H-canaliculatus_F_contig10664.637.1 ID=prot_H-canaliculatus_F_contig10664.637.1|Name=mRNA_H-canaliculatus_F_contig10664.637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=174bp
MKTCREPFTNSSGVLSPDLGNLGDNERAFQSWQARLRSYRRDSVETAVAT
TTTTAPPTGDSTHKVRPRSGTRPTLDLAPRSQEPRTLRIQVLQQTLLLTS
CGVADLPVVALRSLRRFRHFQRARVVVCKMHVLEAQTRRFRISERQPHLT
PLLPSTQELPLTQILPLLARRQA*
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mRNA from alignment at H-canaliculatus_F_contig10664:1329..2069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10664.637.1 ID=mRNA_H-canaliculatus_F_contig10664.637.1|Name=mRNA_H-canaliculatus_F_contig10664.637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=741bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10664:1329..2069+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCAAAGAGTACCCCTGCTGGCCTTTGGCGCTAGACGATTTTCACGAA
GTCATGCTCATTTCCGATAGCTTTGCCACTCGCCCCTCTTTGGAACTCCC
TCCTCAACGCGTCCTCTCGCAGAGAACTGTTCCGCAAGTATGAAGGTTGC
TGCCTCAACTGCGGAGGTCAGAACTGCAGCATGAAAACTTGCAGGGAACC
TTTCACCAACTCTTCCGGCGTGTTGAGCCCTGATCTTGGCAATTTGGGAG
ACAACGAGCGCGCTTTCCAATCCTGGCAAGCCCGCTTGCGTAGCTATCGC
AGAGACAGCGTAGAGACCGCGGTCGCAACAACAACAACAACCGCCCCTCC
AACAGGCGACAGCACCCACAAGGTACGGCCCAGGTCGGGCACGCGCCCAA
CTCTGGACCTAGCTCCACGCTCACAGGAACCCAGAACGCTCCGGATCCAG
GTACTTCAGCAAACTCTGCTGCTTACCAGCTGCGGCGTAGCTGACCTCCC
AGTAGTGGCGCTCCGCTCGCTGCGCCGCTTCCGACACTTTCAGCGAGCTC
GAGTCGTAGTTTGCAAGATGCACGTTTTGGAAGCTCAGACTCGCCGATTT
CGGATATCGGAACGACAACCCCACCTCACACCGCTCCTGCCCAGCACTCA
AGAACTACCTCTGACCCAGATTTTGCCTCTTCTGGCCAGAAGGCAAGCTT
GAGGTGCGGGTGGGGACGGCAGGGCACGCAATGTCCACCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10664:1329..2069+

>mRNA_H-canaliculatus_F_contig10664.637.1 ID=mRNA_H-canaliculatus_F_contig10664.637.1|Name=mRNA_H-canaliculatus_F_contig10664.637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10664:1329..2069+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAACTTGCAGGGAACCTTTCACCAACTCTTCCGGCGTGTTGAGCCC
TGATCTTGGCAATTTGGGAGACAACGAGCGCGCTTTCCAATCCTGGCAAG
CCCGCTTGCGTAGCTATCGCAGAGACAGCGTAGAGACCGCGGTCGCAACA
ACAACAACAACCGCCCCTCCAACAGGCGACAGCACCCACAAGGTACGGCC
CAGGTCGGGCACGCGCCCAACTCTGGACCTAGCTCCACGCTCACAGGAAC
CCAGAACGCTCCGGATCCAGGTACTTCAGCAAACTCTGCTGCTTACCAGC
TGCGGCGTAGCTGACCTCCCAGTAGTGGCGCTCCGCTCGCTGCGCCGCTT
CCGACACTTTCAGCGAGCTCGAGTCGTAGTTTGCAAGATGCACGTTTTGG
AAGCTCAGACTCGCCGATTTCGGATATCGGAACGACAACCCCACCTCACA
CCGCTCCTGCCCAGCACTCAAGAACTACCTCTGACCCAGATTTTGCCTCT
TCTGGCCAGAAGGCAAGCTTGAATGAAAACTTGCAGGGAACCTTTCACCA
ACTCTTCCGGCGTGTTGAGCCCTGATCTTGGCAATTTGGGAGACAACGAG
CGCGCTTTCCAATCCTGGCAAGCCCGCTTGCGTAGCTATCGCAGAGACAG
CGTAGAGACCGCGGTCGCAACAACAACAACAACCGCCCCTCCAACAGGCG
ACAGCACCCACAAGGTACGGCCCAGGTCGGGCACGCGCCCAACTCTGGAC
CTAGCTCCACGCTCACAGGAACCCAGAACGCTCCGGATCCAGGTACTTCA
GCAAACTCTGCTGCTTACCAGCTGCGGCGTAGCTGACCTCCCAGTAGTGG
CGCTCCGCTCGCTGCGCCGCTTCCGACACTTTCAGCGAGCTCGAGTCGTA
GTTTGCAAGATGCACGTTTTGGAAGCTCAGACTCGCCGATTTCGGATATC
GGAACGACAACCCCACCTCACACCGCTCCTGCCCAGCACTCAAGAACTAC
CTCTGACCCAGATTTTGCCTCTTCTGGCCAGAAGGCAAGCTTGA
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