mRNA_H-canaliculatus_F_contig1065.632.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1065.632.1
Unique NamemRNA_H-canaliculatus_F_contig1065.632.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.990e-30
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEVCSFT 183
            VQ EMI+AEQ+ILGRSTDELTSYAGYGGAK NFQGDKLCYHNMRGIGDYGKAGAAEV S T
Sbjct:   95 VQREMIRAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNMRGIGDYGKAGAAEVVSVT 155
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: D8LMK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.440e-19
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEV 171
            +Q EM+KAEQ+ILGR TD L SY GYGGA  N QGDKL Y+NM GIG YG+AGA E 
Sbjct:    1 MQREMMKAEQAILGRFTDALASYTGYGGAMKNLQGDKLWYNNMLGIGAYGEAGAGET 57
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: A0A7S0ASC4_9STRA (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASC4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.910e-14
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEVCSFT 183
            VQHE + AEQ ILGRS D+LT+ AGY G ++  + D +CYHN RG+GDYG  G AEV + +
Sbjct:   94 VQHEFVVAEQRILGRSEDDLTARAGYAGGRA--KDDLVCYHNARGVGDYGTLGHAEVVALS 152
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: B7FSB8_PHATC (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSB8_PHATC)

HSP 1 Score: 70.1 bits (170), Expect = 9.040e-13
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEV 171
            VQHE+++AE++ILGRS +ELT+ AGY G     +  K+CYHN   I DYGK G AEV
Sbjct:   82 VQHELVEAEKTILGRSDNELTARAGYAGGTKGAKDGKVCYHNAAQIADYGKLGHAEV 138
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: A0A6H5JNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.930e-13
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   73 GYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEVCSFT 183
            GYGGAK +F GDKLCYHNMRG+GDYGKA A EV S T
Sbjct:    2 GYGGAKRSFLGDKLCYHNMRGMGDYGKADAGEVVSVT 38
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: A0A7S1YNI6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YNI6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.110e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEV 171
            VQHE+++AE+S+LGRS ++LTS AGY G K+     K+CYHN   + DYGK G AEV
Sbjct:   98 VQHELVEAERSMLGRSDEQLTSRAGYAGGKA--PDGKVCYHNALNVADYGKLGHAEV 152
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: A0A8J5XES5_DIALT (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XES5_DIALT)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGAAEV 171
            VQHE ++ E+S+L R+  EL+S  GY       +  K+CYHN+RG+ DYGK G AE 
Sbjct:   75 VQHEFVQLERSLLKRADLELSSRCGYAAGSLLGENGKVCYHNLRGVADYGKLGHAEA 131
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: A0A7S3TUB4_9SPIT (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TUB4_9SPIT)

HSP 1 Score: 55.5 bits (132), Expect = 2.010e-7
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGA-------KSNFQGDKLCYHNMRGIGDYGKAGAAEV 171
            VQH+++ AEQS+LGR+   +T+  GY G         +   G K+CYHN  GI DYG  G AE 
Sbjct:   70 VQHQLVLAEQSLLGRAGGTITARTGYAGGTRVASGPSAGPAGAKVCYHNPLGIADYGVLGHAEA 133
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BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Match: A0A6V2UXD6_EMIHU (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2UXD6_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 6.710e-6
Identity = 23/59 (38.98%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:    1 VQHEMIKAEQSILGRSTDELTSYAGYGGAK--SNFQGDKLCYHNMRGIGDYGKAGAAEV 171
            VQHE +  E + L R  + +T+  GY G       +  K+CYHN +G+ DYG  G AE 
Sbjct:   65 VQHEFVGEEVAALQRGPESITARTGYAGGTLGGGLKDGKVCYHNFKGVADYGSLGHAEA 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1065.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LMK2_ECTSI2.990e-3090.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMK3_ECTSI2.440e-1968.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0ASC4_9STRA5.910e-1455.74Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
B7FSB8_PHATC9.040e-1356.14Peptide-methionine (S)-S-oxide reductase n=2 Tax=P... [more]
A0A6H5JNI2_9PHAE9.930e-1378.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YNI6_9STRA5.110e-1256.14Peptide-methionine (S)-S-oxide reductase n=1 Tax=G... [more]
A0A8J5XES5_DIALT2.180e-947.37Peptide-methionine (S)-S-oxide reductase n=1 Tax=D... [more]
A0A7S3TUB4_9SPIT2.010e-743.75Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
A0A6V2UXD6_EMIHU6.710e-638.98Peptide-methionine (S)-S-oxide reductase n=3 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1065contigH-canaliculatus_F_contig1065:29245..30202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.7e-22
Seed eggNOG ortholog2880.D8LMK2
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs2DF2K@1,2RZE5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003060.1
Exons2
Model size195
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1065.632.1prot_H-canaliculatus_F_contig1065.632.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1065 29257..30202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928722.5464165-UTR-H-canaliculatus_F_contig1065:29244..292561622928722.5464165-UTR-H-canaliculatus_F_contig1065:29244..29256Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1065 29245..29256 +
1696845539.6180263-UTR-H-canaliculatus_F_contig1065:29244..292561696845539.6180263-UTR-H-canaliculatus_F_contig1065:29244..29256Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1065 29245..29256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928722.5634136-CDS-H-canaliculatus_F_contig1065:29256..292881622928722.5634136-CDS-H-canaliculatus_F_contig1065:29256..29288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1065 29257..29288 +
1696845539.630941-CDS-H-canaliculatus_F_contig1065:29256..292881696845539.630941-CDS-H-canaliculatus_F_contig1065:29256..29288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1065 29257..29288 +
1622928722.5803604-CDS-H-canaliculatus_F_contig1065:30051..302021622928722.5803604-CDS-H-canaliculatus_F_contig1065:30051..30202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1065 30052..30202 +
1696845539.644562-CDS-H-canaliculatus_F_contig1065:30051..302021696845539.644562-CDS-H-canaliculatus_F_contig1065:30051..30202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1065 30052..30202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1065.632.1

>prot_H-canaliculatus_F_contig1065.632.1 ID=prot_H-canaliculatus_F_contig1065.632.1|Name=mRNA_H-canaliculatus_F_contig1065.632.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
MIKAEQSILGRSTDELTSYAGYGGAKSNFQGDKLCYHNMRGIGDYGKAGA
AEVCSFTPMC*
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mRNA from alignment at H-canaliculatus_F_contig1065:29245..30202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1065.632.1 ID=mRNA_H-canaliculatus_F_contig1065.632.1|Name=mRNA_H-canaliculatus_F_contig1065.632.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=958bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1065:29245..30202+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCAGCATGAAATGATCAAGGCGGAGCAGAGCATCCTTGGCAGGTTCGA
AATCATGAACTTTGTGGTATGGCGTGAGAAGTCCGTTTAAAAAAAAGTTA
ACAACACTAAAGGAATACCGTCTGAGGCATACACTGTCCCAGAGGGCTTC
TGTCAATTCCTTTGAGTGAGGGTTCCGTACAATTGACAACACACCAGCCT
TTCTATTAGTCGAAAGGTAGGATAGATACGCAAAGAACGTGAGTGGGAGG
GGCAAAAACCAAGTGGCTTGTGTTGCGATGAACAACGAAGTGGACAACAG
GTGGTTTGAAGTACGTGGATGTGACGGTGAACCATGAAGCGAGAGCAATG
CATGACCCATACTTCCTGTGATGAGTCGCCGTGAGGTGGGATTCCCTGTC
CGACGGCCTGATGATCCATCGTTCGAACACCTGAGTTGCTTCACAGATGA
TTTATAGTTTTCATTGTCGTACATGGGACGAAAACACTCGAATCTGCACA
CACCTGAGTTTGTTTTGTCCCTGTTCTGTACTCGTGTTGACGCCTATATG
AGCTCATTCCTACGGATGGTGCTGGTATGTTTCCAAACGTCAAATAGGCC
GGTTTTGACTTGAACGGTTTGTGTCGAACCTGCGCATTTTTTTTGTGAAA
GCAGCAGCAGAAACAGGTGATGGTAGCAGCAGGAGCCTTTGTTTCGCGGG
CGCAGCACACACCCGGTACACGTTTTTCATCTACAAAACGAAGGACGGAC
CTTTGCTGTCTTTGCCGTCTCTGCTAACGGCCGTTGACACTTGTGTATCA
CGCTCAGATCGACGGACGAGCTGACTTCCTACGCCGGTTACGGCGGTGCG
AAGAGTAATTTCCAGGGGGACAAGCTTTGCTACCACAATATGCGAGGAAT
CGGCGACTACGGCAAGGCTGGGGCCGCCGAGGTGTGTTCATTTACCCCCA
TGTGTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1065:29245..30202+

>mRNA_H-canaliculatus_F_contig1065.632.1 ID=mRNA_H-canaliculatus_F_contig1065.632.1|Name=mRNA_H-canaliculatus_F_contig1065.632.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1065:29245..30202+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCAAGGCGGAGCAGAGCATCCTTGGCAGATGATCAAGGCGGAGCAG
AGCATCCTTGGCAGATCGACGGACGAGCTGACTTCCTACGCCGGTTACGG
CGGTGCGAAGAGTAATTTCCAGGGGGACAAGCTTTGCTACCACAATATGC
GAGGAATCGGCGACTACGGCAAGGCTGGGGCCGCCGAGGTGTGTTCATTT
ACCCCCATGTGTTAGATCGACGGACGAGCTGACTTCCTACGCCGGTTACG
GCGGTGCGAAGAGTAATTTCCAGGGGGACAAGCTTTGCTACCACAATATG
CGAGGAATCGGCGACTACGGCAAGGCTGGGGCCGCCGAGGTGTGTTCATT
TACCCCCATGTGTTAG
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