mRNA_H-canaliculatus_F_contig10645.628.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10645.628.1
Unique NamemRNA_H-canaliculatus_F_contig10645.628.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: D8LLX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX7_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.530e-56
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERVASGTALGAKRERGEEGHVEDPVDWEEDFGQQAAKAAGRGIPQEDR 294
            LK RKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMT+EARQELDLETHWE VASGTALG+KR++GEEGHVEDPVDWEEDFGQ+AAKAAGRGI  E+R
Sbjct:  147 LKQRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALGSKRKKGEEGHVEDPVDWEEDFGQEAAKAAGRGIIDENR 244          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A836CM28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM28_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.890e-14
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERV 159
            LK RKL +A GITGAEG DCDDWM+VDC NLIVH   ++ R+EL+LE  WE +
Sbjct:  158 LKRRKLSHAPGITGAEGYDCDDWMIVDCWNLIVHVFEAKYRKELNLEARWENI 210          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A7S2R5J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5J7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.220e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERVASGTALGAKRERGEEGHVEDPVD 228
            LK RK + A G +GAEG DCDDWM+VD  N+IVH M  +AR+ LDLE HW+   +    G    +  E H+E+ ++
Sbjct:  150 LKKRK-IKAPGASGAEGYDCDDWMIVDAGNIIVHLMNEKARRLLDLEAHWKNPEATLPQGGTESQ-REAHIEELIE 223          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A0P1A703_PLAHL (Iojap-like ribosome-associated protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A703_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 2.560e-9
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERV 159
            LK R++V+     G EG DCDDWM+ DC+N++VHFM ++ R+ L LE HWE +
Sbjct:  212 LKAREIVDDFDY-GVEGRDCDDWMIADCNNIVVHFMRADTRRILALEDHWENM 263          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A485K631_9STRA (Aste57867_1361 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K631_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERV 159
            +K R++ +  G    EG DCDDWM+ D +N+IVHFMT+E R  L LE HWE +
Sbjct:  257 MKAREMQDNFGYV-VEGRDCDDWMIADVNNIIVHFMTAETRHMLQLEDHWENM 308          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A3F2RH48_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RH48_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-8
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERVAS 165
            +K R++V+     G EG DCDDWM+ DC+N++VH M ++ R+ L LE HWE + +
Sbjct:  131 MKAREIVDEFDY-GVEGRDCDDWMIADCNNIVVHLMHADTRRILALEDHWENMVN 184          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A5D6Y9S2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9S2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.000e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWE 153
            ++ RKLV+       EG DCDDWM+ DC+N++VHFM ++ R+ L LE HWE
Sbjct:  294 MRARKLVDEFEYA-VEGRDCDDWMIADCNNIVVHFMNADTRRILALEEHWE 343          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: K3X3T5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3T5_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 2.490e-8
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   46 EGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERV 159
            EG DCDDWM+ DC+N++VHFM  + R+ L+LE HWE +
Sbjct:  172 EGRDCDDWMIADCNNIVVHFMREDTRRILNLEDHWENM 209          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A3R7GIQ2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GIQ2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.590e-8
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERVAS 165
            +K R++V+     G EG DCDDWM+ DC+N++VH M ++ R+ L LE HWE + +
Sbjct:  247 MKAREIVDEFDY-GVEGRDCDDWMIADCNNIVVHLMHADTRRILALEDHWENMVN 300          
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Match: A0A3R6VHZ6_9STRA (AP2/ERF domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VHZ6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.720e-8
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 LKHRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERVAS 165
            +K R + +  G    EG DCDDWM+ D +N++VHFMT+E R+ L LE HWE + +
Sbjct:  293 MKARNMDDDFGYV-VEGRDCDDWMIADVNNIVVHFMTAETRKMLALEDHWENMVN 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10645.628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLX7_ECTSI1.530e-5689.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM28_9STRA3.890e-1464.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5J7_9STRA2.220e-1246.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0P1A703_PLAHL2.560e-950.94Iojap-like ribosome-associated protein n=1 Tax=Pla... [more]
A0A485K631_9STRA1.390e-850.94Aste57867_1361 protein n=1 Tax=Aphanomyces stellat... [more]
A0A3F2RH48_9STRA1.450e-845.45Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A5D6Y9S2_9STRA2.000e-850.98Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X3T5_GLOUD2.490e-857.89Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7GIQ2_9STRA2.590e-845.45Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3R6VHZ6_9STRA3.720e-847.27AP2/ERF domain-containing protein n=2 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10645contigH-canaliculatus_F_contig10645:134..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.6e-41
Seed eggNOG ortholog2880.D8LLX7
EggNOG free text desc.Ribosomal silencing factor during starvation
EggNOG OGs2E900@1,2SFE9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein Iojap/ribosomal silencing factor RsfS
Ec32 orthologEc-14_002040.1
Exons1
Model size297
Cds size270
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.786898-UTR-H-canaliculatus_F_contig10645:133..1601622928721.786898-UTR-H-canaliculatus_F_contig10645:133..160Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10645 134..160 +
1696845539.1854584-UTR-H-canaliculatus_F_contig10645:133..1601696845539.1854584-UTR-H-canaliculatus_F_contig10645:133..160Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10645 134..160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.8028114-CDS-H-canaliculatus_F_contig10645:160..4301622928721.8028114-CDS-H-canaliculatus_F_contig10645:160..430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10645 161..430 +
1696845539.204997-CDS-H-canaliculatus_F_contig10645:160..4301696845539.204997-CDS-H-canaliculatus_F_contig10645:160..430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10645 161..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10645.628.1prot_H-canaliculatus_F_contig10645.628.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10645 161..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10645.628.1

>prot_H-canaliculatus_F_contig10645.628.1 ID=prot_H-canaliculatus_F_contig10645.628.1|Name=mRNA_H-canaliculatus_F_contig10645.628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MGITGAEGIDCDDWMLVDCDNLIVHFMTSEARQELDLETHWERVASGTAL
GAKRERGEEGHVEDPVDWEEDFGQQAAKAAGRGIPQEDR*
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mRNA from alignment at H-canaliculatus_F_contig10645:134..430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10645.628.1 ID=mRNA_H-canaliculatus_F_contig10645.628.1|Name=mRNA_H-canaliculatus_F_contig10645.628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10645:134..430+ (Hapterophycus canaliculatus Oshoro5f female)
CTCAAGCATCGGAAGCTGGTGAACGCTATGGGCATCACCGGGGCCGAGGG CATAGACTGCGACGACTGGATGCTCGTCGACTGCGACAACTTGATAGTGC ACTTCATGACGAGCGAAGCGCGGCAGGAGCTGGACCTCGAAACCCATTGG GAGAGGGTTGCGAGTGGCACAGCCCTGGGCGCGAAGCGGGAGAGGGGCGA AGAGGGGCACGTCGAGGACCCGGTTGACTGGGAAGAGGACTTCGGGCAGC AGGCGGCGAAGGCGGCCGGGCGAGGAATCCCCCAAGAAGATCGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10645:134..430+

>mRNA_H-canaliculatus_F_contig10645.628.1 ID=mRNA_H-canaliculatus_F_contig10645.628.1|Name=mRNA_H-canaliculatus_F_contig10645.628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10645:134..430+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCATCACCGGGGCCGAGGGCATAGACTGCGACGACTGGATGCTCGT
CGACTGCGACAACTTGATAGTGCACTTCATGACGAGCGAAGCGCGGCAGG
AGCTGGACCTCGAAACCCATTGGGAGAGGGTTGCGAGTGGCACAGCCCTG
GGCGCGAAGCGGGAGAGGGGCGAAGAGGGGCACGTCGAGGACCCGGTTGA
CTGGGAAGAGGACTTCGGGCAGCAGGCGGCGAAGGCGGCCGGGCGAGGAA
TCCCCCAAGAAGATCGATGAATGGGCATCACCGGGGCCGAGGGCATAGAC
TGCGACGACTGGATGCTCGTCGACTGCGACAACTTGATAGTGCACTTCAT
GACGAGCGAAGCGCGGCAGGAGCTGGACCTCGAAACCCATTGGGAGAGGG
TTGCGAGTGGCACAGCCCTGGGCGCGAAGCGGGAGAGGGGCGAAGAGGGG
CACGTCGAGGACCCGGTTGACTGGGAAGAGGACTTCGGGCAGCAGGCGGC
GAAGGCGGCCGGGCGAGGAATCCCCCAAGAAGATCGATGA
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