mRNA_H-canaliculatus_F_contig1064.624.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1064.624.1
Unique NamemRNA_H-canaliculatus_F_contig1064.624.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 3.550e-118
Identity = 185/221 (83.71%), Postives = 198/221 (89.59%), Query Frame = 1 
Query:  151 MVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            MVA+Q+FLG+AA LI SS AFVAPMAVRS APA+SSS+LKM SAGS YV TLPGAPFGDGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVLVAEQ+HP FMGPDYIGPAVDHFQEI+AQ+PEFWVFSLLGMA IEY TI TAF  P AVTGEGGLKEDY PGDLGFDPL +KP+ EA L  M+TKELNNGRLAMIGIAGMLVQEL+NPA+ILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKM-SAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.870e-115
Identity = 179/221 (81.00%), Postives = 197/221 (89.14%), Query Frame = 1 
Query:  151 MVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            + +S MFLGTAA LI SS AFVAPMAVRS APA+S+S+LKM SAGS YV TLPGAPFGDGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQFPEFW FSLLGMA IEY TIT A+AEP  VTGEGGL+++YSPGDLGFDPL +KPK +A L  MQTKELNNGRLAMIGIAGMLVQELVNPA+ILG
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKM-SAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 1.680e-111
Identity = 178/220 (80.91%), Postives = 192/220 (87.27%), Query Frame = 1 
Query:  151 MVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANIL 810
            MVASQMFLGTAAALI SS AFVAP+AVRS APA+++S+LKM SAGS YV TLPGAPF DGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG+LVAE++HP FMG D+IGPA+ HFQEI+AQFPEFW FSLLGMA IEY TI TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVN  +IL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKM-SAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 4.310e-101
Identity = 164/218 (75.23%), Postives = 185/218 (84.86%), Query Frame = 1 
Query:  160 SQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            S MFLGTAA LI SS AFV PMAVRS APA+S+S+LKM SAG+ Y+ TLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAEQ+HPFFMGPDYIGPAVDHFQEITA+FP+FW +SLLGMA IEY TI  A+AEP  VTGEGGL+++YSPGDLGFDP  IKPK +A L  MQ KELNNGRLAMIGI GMLVQELVN  +ILG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKM-SAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 3.290e-90
Identity = 138/161 (85.71%), Postives = 146/161 (90.68%), Query Frame = 1 
Query:  331 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAEQ+HPFFMGPDYIGPAVDHFQEI+AQFPEFW FSLLGMA +EY TI TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 1.130e-89
Identity = 160/221 (72.40%), Postives = 165/221 (74.66%), Query Frame = 1 
Query:  151 MVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            MVASQMF+GTAA LI SS AFVAPMAVRSV    SS  LKM SAGS YV TLPGAPF DGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FW FSLLGMA IEY TI TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKM-SAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 3.350e-89
Identity = 186/392 (47.45%), Postives = 194/392 (49.49%), Query Frame = 1 
Query:  151 MVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            MVASQMF+GTAA LI SS AFVAP+AVRSVA  T SSS  M SAGS YV TLPGAPF DGK                                                                                                                                                                           IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAEQ+HPFFMGPDYIGPAVDHFQEI+AQFPEFW FSLLGMA IEY TI TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 2.080e-85
Identity = 131/160 (81.88%), Postives = 143/160 (89.38%), Query Frame = 1 
Query:  331 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANIL 810
            KIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGVLVAE++HPFFMGPDYIGPAVDHFQEI+A+FPEFW FSLL +ALIEY TIT A+AEP  VTGEGGL+++YSPGDLGFDPL +KP  +  L TMQTKELNNGRLAMIGIAG LVQELVNP NIL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 2.240e-81
Identity = 139/234 (59.40%), Postives = 171/234 (73.08%), Query Frame = 1 
Query:  112 TLSSSALY*PSRKMVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 813
            T +S+A+      + ++   +G A+    S  AF+ P      A  TS+++    SAGS YV TLPGAPF DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE FHP F+GPDYIGPA+ HF+EITA+FP+FW  +LL +A +EYR I   FAE D VTGEGG++ DY PGDLGFDPLG+ P+ E +L  M+TKELN+GRLAMIGI GM+VQELV P  I G
Sbjct:   40 TETSNAILKRCVMVTSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 8.070e-70
Identity = 130/225 (57.78%), Postives = 161/225 (71.56%), Query Frame = 1 
Query:  151 MVASQMFLGTAAALITSSVAFVAPMAV--RSVAPATSSSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANIL 810
            MV SQ+FLGTAA LI SS AFVAP+A    S+A   +SS+ KM +AGS Y  +LPGAPFG   +GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G+LV+E FHP FMGP YIGPAV+H Q+I   +P FWV SL  +A IE +TI  A+     VTG G LK +Y PGDLGFDPLG+ PK   D   +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKM-TAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1064.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI3.550e-11883.71Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.870e-11581.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI1.680e-11180.91Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI4.310e-10175.23Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI3.290e-9085.71Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.130e-8972.40LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JWB4_9PHAE3.350e-8947.45LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI2.080e-8581.88Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI2.240e-8159.40Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI8.070e-7057.78Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1064contigH-canaliculatus_F_contig1064:7218..10320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.5
Seed ortholog evalue4.5e-99
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Exons4
Model size1875
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1064.624.1prot_H-canaliculatus_F_contig1064.624.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1064 7368..9261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.3962321-UTR-H-canaliculatus_F_contig1064:7217..73671622928721.3962321-UTR-H-canaliculatus_F_contig1064:7217..7367Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 7218..7367 +
1696845538.9549577-UTR-H-canaliculatus_F_contig1064:7217..73671696845538.9549577-UTR-H-canaliculatus_F_contig1064:7217..7367Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 7218..7367 +
1622928721.466754-UTR-H-canaliculatus_F_contig1064:9261..103201622928721.466754-UTR-H-canaliculatus_F_contig1064:9261..10320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 9262..10320 +
1696845539.0059612-UTR-H-canaliculatus_F_contig1064:9261..103201696845539.0059612-UTR-H-canaliculatus_F_contig1064:9261..10320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 9262..10320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.413632-CDS-H-canaliculatus_F_contig1064:7367..75501622928721.413632-CDS-H-canaliculatus_F_contig1064:7367..7550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 7368..7550 +
1696845538.965521-CDS-H-canaliculatus_F_contig1064:7367..75501696845538.965521-CDS-H-canaliculatus_F_contig1064:7367..7550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 7368..7550 +
1622928721.4289906-CDS-H-canaliculatus_F_contig1064:7946..80691622928721.4289906-CDS-H-canaliculatus_F_contig1064:7946..8069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 7947..8069 +
1696845538.9742308-CDS-H-canaliculatus_F_contig1064:7946..80691696845538.9742308-CDS-H-canaliculatus_F_contig1064:7946..8069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 7947..8069 +
1622928721.4394279-CDS-H-canaliculatus_F_contig1064:8382..84661622928721.4394279-CDS-H-canaliculatus_F_contig1064:8382..8466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 8383..8466 +
1696845538.9833064-CDS-H-canaliculatus_F_contig1064:8382..84661696845538.9833064-CDS-H-canaliculatus_F_contig1064:8382..8466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 8383..8466 +
1622928721.4513116-CDS-H-canaliculatus_F_contig1064:8985..92611622928721.4513116-CDS-H-canaliculatus_F_contig1064:8985..9261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 8986..9261 +
1696845538.9957771-CDS-H-canaliculatus_F_contig1064:8985..92611696845538.9957771-CDS-H-canaliculatus_F_contig1064:8985..9261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 8986..9261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1064.624.1

>prot_H-canaliculatus_F_contig1064.624.1 ID=prot_H-canaliculatus_F_contig1064.624.1|Name=mRNA_H-canaliculatus_F_contig1064.624.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp
MVASQMFLGTAAALITSSVAFVAPMAVRSVAPATSSSSLKMQSAGSAYVE
TLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLV
AEQFHPFFMGPDYIGPAVDHFQEITAQFPEFWVFSLLGMALIEYRTITTA
FAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRL
AMIGIAGMLVQELVNPANILG*
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mRNA from alignment at H-canaliculatus_F_contig1064:7218..10320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1064.624.1 ID=mRNA_H-canaliculatus_F_contig1064.624.1|Name=mRNA_H-canaliculatus_F_contig1064.624.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3103bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1064:7218..10320+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCGGTCCGCTGCATCATCACGCCGCATGCATGCAGACATGCAGAGGCC
CACTACCCATCACCCGCCAACACATTCTCAACCACAACCAGACCGCAACC
AGCCTCCCACCACCCTCTCTTCCTCAGCCCTTTACTAACCCTCAAGGAAG
ATGGTCGCGTCCCAGATGTTCCTCGGCACCGCCGCTGCTCTCATCACATC
TTCGGTTGCGTTCGTCGCGCCGATGGCAGTGCGATCCGTCGCACCTGCGA
CCTCGTCTTCCAGCCTGAAGATGCAGAGCGCCGGCTCTGCCTATGTCGAG
ACCCTGCCGGGCGCTCCCTTCGGTGATGGCAAGGTGTGTCCTAGTGGTGC
AATGCTCTAGTGAAAGATGTGTTCGTAAGGGTGGAAAAGAAAACGTTGCC
GTTCACCTTTATCGAGTACCGGGGACGGCCAGTGAACCAATAATCTGATG
GAAAAGGCGCGGGGGTAACGAGCCAAACACAATCTCATCAGTGTAATCGC
ATTCGAAATCGAGATGACCAGGAAGTCGCACCAAAGTCTCATCAGTCTCA
TCGTATTCGAAAGCGAGATGACAGGAAAGCCGCACCAAAGTCCGTATGCG
TTGCAACCCAAAAGATCTAGTCTAGTGCTTCGAAAACCGGATGTACACTG
AGATGTCCTCGACTCCAGGATACGCCGACCTCATGACTATCCGCCTGCAA
CTTCAAACCCGGCCGCGCGCGCACATCAGATCTTCGACCCCCTCGGCTTG
TCCGACGGCGCCGCGCCCGGCGACATCAAGAAGTGGCGAGAGGCCGAGAT
CAAGCATGGACGCGTAGCAATGCTTGCATCCCTAGGCGTGCTCGTAGCCG
AGGTAAGAACTAAAAGGCCACTGCTGTAGCACTGCTGACTGTCCCGTGAG
GTGGTTTGAAAGTGTCGGTTCAAAATAGGCAGCAAGGCAGAGAAGCGGTG
ATGTCGACGAGATGTGCAGGGTTTCGAGTAGGACGAATCGAGGCGATGAG
CGAAAAGGGAGTAGCGAAGAGCTCCCTACCAGAAAAGCCAACCGCTGCTG
TATCTCCTGCCCCGTGGGCTTGAGCGTTGAAACTTCCGTAAACCGTTGAC
TCGGCACATTCCCGTCCACTGCTATGTGACCCGTTCGCTTCTCGCGCGCT
GTTTTTTTGCTCCAGCAATTCCACCCCTTCTTCATGGGCCCCGACTACAT
CGGCCCCGCTGTGGACCACTTCCAGGAGATCACCGCCCAGTTCCCCGAGG
TTAGCAACTCACCCTACACATCGTGCAACACATCGTGTGTCGGACGGCAC
TGGTACGAAGTGCCTGTGGATAGTGCCGAAGAAATTTCATGTGTTCACAA
CAGGAGTGTCGCCCTCTCTCTTTCCTCTTGAGAAAACGAAACAAAGGACG
TTCTAGTACGGGCGTACAACACCTTGATGATTTTGTCGTTCGCACCTCAT
GGCGGCGGAAGATGTGTACAGTGATGTGGTTTGCCCCTGAAGCTGCCGAG
TTGATCAGCTGGTTCCAGGAGTAATTGAGCTTTTGGTTCAAAATTGACCC
CATCAGATTGCGCAACAAAGCCGCCTTACACCCACAACATCGTCAAAAGT
GAAACTTGACTGGCCTATACCGACACGAATAACCGCATCTGATCGCTCGA
GGTAAAGATCACCATTTATGGGGGATCAGTCACGCGAAATACTAGACGCA
ACTGATGACATTCGTGCTACCTCGATTGTGACTCTTCCTGATTCTGCGAC
CCAAATCGAATTGAGCAGTTCTGGGTATTCTCCCTCCTGGGCATGGCGCT
CATCGAGTACCGGACCATCACCACCGCCTTCGCCGAGCCTGACGCGGTCA
CCGGCGAGGGCGGCCTTAAGGAGGACTACAGCCCGGGAGACCTCGGCTTC
GACCCCCTCGGCATCAAACCCAAGACCGAGGCCGACCTAGTGACGATGCA
GACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCGGTATCGCCGGCA
TGTTGGTGCAGGAGCTTGTCAACCCGGCCAACATCCTGGGCTGAAAAAAG
TTGCGAACACATTAGATGACATGATTGTTCGATGCCAAAGTGCCGATGTC
CTTGAGAGTTGTAAGCGAAGCAGCGATGTGAGATTGAGACGGTTGGCGAG
AACAAGAGTAGTACTGTAGCGTACGCACTTTTCCTCTGGGGAGGGCTGAG
AGCTGATGGAGCGAGGAGATGGCGTACACTTTATCTTGGCTGAACAAAAA
CTCGAGTGGCTTTTTCCTCGTATCTGGTGACGATATACGGTGGTGTGTGT
GTGCGCTTTGCCGTGATAGCAGCTTGATGATTCTTGTTCAAGCAAAAGTG
ACCAATACCGAATGGAAGCAGAGAGCACTGGCGATTTATGTTCGTGGTGT
TGTCGTTTGTTTCTCAACGTCTGGGGAGCTAGTGAAAAGGGCTTGTCAAG
AGAGCTAGGTCGTTGTGCGGTTGAATACGGGTCGGTGCTGTTACGGAGCT
ATTCTTAGGTGGAACATCGACGCGTGTGTGCCAATTGTGTGGAGTCAGAT
GTAGTGTCTATGGTCATTCTGCATCTGATCGGAAGGGGCAATTGACAAAA
TCGCCGCTGTAGTGAGAATTTTGTGTTGTCGTACACAACTGAAGCACTGG
GATGAAAACAATCATCGCACATCTCTTTTTTGTCTCATGCTGGACATGCA
AGTCCGATGTGAAGCCGCCGTGTTGCCCTATCGAAATTGGCGAGTAACTC
ATTTAAAGGCATGTGAAATCGTTGGTGTTTTTTTTCTTCTTCGATAACAG
GGCTTTTCCCTTCGCACTTTGCACACGTAGTCTAGGGATAGAGTAGTCGC
ACAAGCAAAAGCGAATACCAAGTTTGCACGTGCAGATGAAGGTGCCGGTA
TTTCTAGATGTTCGGATGTTGAAGTGATCCTCCCGCGCCGGGCGATGGAA
GAGCAAATGTTTTTGTACGACATAACACCATGTACTCGTGTCTTGAAGGA
ACTGCTTCGGTGTCACTATCGTCAAAACGAATGTTTCGGTTTTTGCGCGC
CGACGCCTGGCAGTCGCCTTCGCAAGACACTCAAAAACAATGTGTTCCGG
TTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1064:7218..10320+

>mRNA_H-canaliculatus_F_contig1064.624.1 ID=mRNA_H-canaliculatus_F_contig1064.624.1|Name=mRNA_H-canaliculatus_F_contig1064.624.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1064:7218..10320+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCGCGTCCCAGATGTTCCTCGGCACCGCCGCTGCTCTCATCACATC
TTCGGTTGCGTTCGTCGCGCCGATGGCAGTGCGATCCGTCGCACCTGCGA
CCTCGTCTTCCAGCCTGAAGATGCAGAGCGCCGGCTCTGCCTATGTCGAG
ACCCTGCCGGGCGCTCCCTTCGGTGATGGCAAGATGGTCGCGTCCCAGAT
GTTCCTCGGCACCGCCGCTGCTCTCATCACATCTTCGGTTGCGTTCGTCG
CGCCGATGGCAGTGCGATCCGTCGCACCTGCGACCTCGTCTTCCAGCCTG
AAGATGCAGAGCGCCGGCTCTGCCTATGTCGAGACCCTGCCGGGCGCTCC
CTTCGGTGATGGCAAGATCTTCGACCCCCTCGGCTTGTCCGACGGCGCCG
CGCCCGGCGACATCAAGAAGTGGCGAGAGGCCGAGATCAAGCATGGACGC
GTAGCAATGCTTGCATCCCTAGGCGTGCTCGTAGCCGAGATCTTCGACCC
CCTCGGCTTGTCCGACGGCGCCGCGCCCGGCGACATCAAGAAGTGGCGAG
AGGCCGAGATCAAGCATGGACGCGTAGCAATGCTTGCATCCCTAGGCGTG
CTCGTAGCCGAGCAATTCCACCCCTTCTTCATGGGCCCCGACTACATCGG
CCCCGCTGTGGACCACTTCCAGGAGATCACCGCCCAGTTCCCCGAGCAAT
TCCACCCCTTCTTCATGGGCCCCGACTACATCGGCCCCGCTGTGGACCAC
TTCCAGGAGATCACCGCCCAGTTCCCCGAGTTCTGGGTATTCTCCCTCCT
GGGCATGGCGCTCATCGAGTACCGGACCATCACCACCGCCTTCGCCGAGC
CTGACGCGGTCACCGGCGAGGGCGGCCTTAAGGAGGACTACAGCCCGGGA
GACCTCGGCTTCGACCCCCTCGGCATCAAACCCAAGACCGAGGCCGACCT
AGTGACGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCG
GTATCGCCGGCATGTTGGTGCAGGAGCTTGTCAACCCGGCCAACATCCTG
GGCTGATTCTGGGTATTCTCCCTCCTGGGCATGGCGCTCATCGAGTACCG
GACCATCACCACCGCCTTCGCCGAGCCTGACGCGGTCACCGGCGAGGGCG
GCCTTAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCCCCTCGGC
ATCAAACCCAAGACCGAGGCCGACCTAGTGACGATGCAGACCAAGGAGCT
CAACAACGGCCGCCTGGCCATGATCGGTATCGCCGGCATGTTGGTGCAGG
AGCTTGTCAACCCGGCCAACATCCTGGGCTGA
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