mRNA_H-canaliculatus_F_contig1064.623.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 356 bits (914), Expect = 9.980e-119 Identity = 180/220 (81.82%), Postives = 194/220 (88.18%), Query Frame = 1 Query: 70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 MV +Q+FLG+AATLIASS AFVAPMAVRS AP SSSS SAGS YV TLPGAPFGDGKIFDPL LSDGA P DIKKWREAEIKHGRV+MLASLGVLVAEQ+HPLFMGP+YIGPAVDHFQEI+A+YPEFWVFSLLGMA IEY +I TAF P AVTGEGGLKEDY PGDLGFDPL +KP+ EA L+ M+TKELNNGRLAMIGIAGMLVQEL+NP ILG Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 350 bits (898), Expect = 2.720e-116 Identity = 174/220 (79.09%), Postives = 194/220 (88.18%), Query Frame = 1 Query: 70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 + S MFLGTAATLIASS AFVAPMAVRS AP SS+S SAGS YV TLPGAPFGDGKIFDPL LSDGA PG+IK WREAEIKHGRV+MLA++GV+VAEQ+HPLFMGP+YIGPAVDHFQEI+A++PEFW FSLLGMA IEY +I+ A+AEP VTGEGGL+++YSPGDLGFDPL +KPK +A LEKMQTKELNNGRLAMIGIAGMLVQELVNP ILG Sbjct: 2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 334 bits (857), Expect = 4.730e-110 Identity = 170/219 (77.63%), Postives = 187/219 (85.39%), Query Frame = 1 Query: 70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSIL 726 MV SQMFLGTAA LIASS AFVAP+AVRS AP S++S SAGS YV TLPGAPF DGKIFDPL LSDGAAPGDIKKWREAEIKHGRV+MLASLG+LVAE++HPLFMG ++IGPA+ HFQEI+A++PEFW FSLLGMA IEY +I TAF P AVTGEGGLKEDY PGDLGFDPL +KP EA L+ M+TKELNNGRLAMIGIAGML QELVN IL Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 317 bits (812), Expect = 2.380e-103 Identity = 162/217 (74.65%), Postives = 183/217 (84.33%), Query Frame = 1 Query: 79 SQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 S MFLGTAATLIASSAAFV PMAVRS AP SS+S SAG+ Y+ TLPGA +GKIFD L L+DGA PG+IK WREAEIKHGRV+MLA++GV+VAEQ+HP FMGP+YIGPAVDHFQEITAK+P+FW +SLLGMA IEY +I A+AEP VTGEGGL+++YSPGDLGFDP IKPK +A LEKMQ KELNNGRLAMIGI GMLVQELVN ILG Sbjct: 5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 280 bits (717), Expect = 1.990e-89 Identity = 155/220 (70.45%), Postives = 162/220 (73.64%), Query Frame = 1 Query: 70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 MV SQMF+GTAATLIASS AFVAPMAVRSV SS SAGS YV TLPGAPF DGKIFDPLGLSDGAAPGDIKKWREAEIKHGRV+MLASLGV+VAE FW FSLLGMA IEY +I TAF P AVTGEGGLKEDY PGDLGFDPL +KP EA L+ M+TKELNNGRLAMIGIAGML QELVNP ILG Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 277 bits (708), Expect = 5.140e-88 Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 1 Query: 247 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 +IFDPLGLSDGAAPGDIKKWREAEIKHGRV+MLASLGV+VAEQ+HP FMGP+YIGPAVDHFQEI+A++PEFW FSLLGMA +EY +I TAF P AVTGEGGLKEDY PGDLGFDPL +KP EA L+ M+TKELNNGRLAMIGIAGML QELVNP ILG Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 278 bits (710), Expect = 1.490e-85 Identity = 132/161 (81.99%), Postives = 144/161 (89.44%), Query Frame = 1 Query: 247 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 +IFDPLGLSDGAAPGDIKKWREAEIKHGRV+MLASLGV+VAEQ+HP FMGP+YIGPAVDHFQEI+A++PEFW FSLLGMA IEY +I TAF P AVTGEGGLKEDY PGDLGFDPL +KP EA L+ M+TKELNNGRLAMIGIAGML QELVNP ILG Sbjct: 232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 270 bits (689), Expect = 4.530e-84 Identity = 134/213 (62.91%), Postives = 167/213 (78.40%), Query Frame = 1 Query: 91 LGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729 +G A+ AS AF+ P A +S++ +M SAGS YV TLPGAPF DGK++DP+GLS A P DIKKWREAEIKHGRV+MLAS+GVLVAE FHPLF+GP+YIGPA+ HF+EITA++P+FW +LL +A +EY+ I+ FAE D VTGEGG++ DY PGDLGFDPLG+ P+ E +L M+TKELN+GRLAMIGI GM+VQELV P+ I G Sbjct: 60 VGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 263 bits (673), Expect = 5.040e-83 Identity = 124/160 (77.50%), Postives = 142/160 (88.75%), Query Frame = 1 Query: 247 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSIL 726 KIFDPLGL+DGA GDIK WREAEIKHGRV+MLASLGVLVAE++HP FMGP+YIGPAVDHFQEI+A++PEFW FSLL +ALIEY +I+ A+AEP VTGEGGL+++YSPGDLGFDPL +KP + LE MQTKELNNGRLAMIGIAG LVQELVNP +IL Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 247 bits (630), Expect = 8.280e-76 Identity = 134/224 (59.82%), Postives = 164/224 (73.21%), Query Frame = 1 Query: 70 MVGSQMFLGTAATLIASSAAFVAPMAV--RSVAPVSSSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSIL 726 MV SQ+FLGTAATLIASSAAFVAP+A S+A V++SS +AGS Y +LPGAPFG +GK FDP GL+ P IKKWREAE+KHGRVSMLA++G+LV+E FHPLFMGP YIGPAV+H Q+I YP FWV SL +A IE ++I A+ VTG G LK +Y PGDLGFDPLG+ PK D +Q++EL+ GR AMIG+ GM+VQE+V+ IL Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1064.623.1 >prot_H-canaliculatus_F_contig1064.623.1 ID=prot_H-canaliculatus_F_contig1064.623.1|Name=mRNA_H-canaliculatus_F_contig1064.623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=221bp MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETback to top mRNA from alignment at H-canaliculatus_F_contig1064:3793..6685- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1064.623.1 ID=mRNA_H-canaliculatus_F_contig1064.623.1|Name=mRNA_H-canaliculatus_F_contig1064.623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2893bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1064:3793..6685- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1064:3793..6685- >mRNA_H-canaliculatus_F_contig1064.623.1 ID=mRNA_H-canaliculatus_F_contig1064.623.1|Name=mRNA_H-canaliculatus_F_contig1064.623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1064:3793..6685- (Hapterophycus canaliculatus Oshoro5f female)back to top |