mRNA_H-canaliculatus_F_contig10639.622.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10639.622.1
Unique NamemRNA_H-canaliculatus_F_contig10639.622.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: D8LEC5_ECTSI (Tup_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC5_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 9.050e-129
Identity = 366/510 (71.76%), Postives = 383/510 (75.10%), Query Frame = 1 
Query:    1 QHQEEREEYEKKFRQQLVEMDRIQHSLKQLQDTHMLMKQQYEDEIVRLRRQLDA-HPLKGDPDGRGGG-GSSTQGVSGGMSMGSTGPGQSHSSIASPQKGLGGMPT---HGLASPRKQQGQPEPGAASLRGPMLTAPPGSHMMGGXXXXXXXXXXGSGVVLPGMAMRGRGGPGEDDYGG-RGLGPNGQTMEPLSKRPRLAGLHGPPGPLPPHGSVLHPPHGFSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPREARPSAAEIGGSAGGGSGMVDIPDAIPAELSYQVRFEVGEDGNRGSASARDGLEVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEADPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEGGQQGATTLSGHE 1512
            QH EEREEYEKKFRQQL EMDRIQHSLKQLQ+ HM+MKQQYEDEIVRLR QL++ HPLK DPD RGGG GSS QGVSGGMSMGSTGP QSH     P KGLGGMP    HGL SPRKQ GQ EPGAASLRGPMLTAP G+ ++GG   XXXXXXX                     YGG RG GPNGQT+EPLSKRPRLA L GPPGPLPPH  VLHPPHGFSQ        XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     MV+IPDAIPAELSYQVR+E  E     +A+A+DGL VELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVN+FKQLYVCRK V   Q    +A   DPYVRAVCFSPDGLSIVAGME NSAKVL+L EEGG+QGA TLSGHE
Sbjct:   96 QHLEEREEYEKKFRQQLAEMDRIQHSLKQLQEAHMVMKQQYEDEIVRLRHQLESSHPLKSDPDSRGGGAGSSVQGVSGGMSMGSTGPSQSHXXXX-PHKGLGGMPVGGPHGLGSPRKQPGQLEPGAASLRGPMLTAP-GAQLVGGGGMXXXXXXXXXXXXXXXXXXX------XXXYGGGRGQGPNGQTLEPLSKRPRLADLQGPPGPLPPH--VLHPPHGFSQSQHQQHPQXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGGPEGQYRWPGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------MVEIPDAIPAELSYQVRYEAEEGEGGRAAAAKDGLAVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNSFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHE 585
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A6H5J9G6_9PHAE (Tup_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G6_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 3.330e-86
Identity = 173/224 (77.23%), Postives = 180/224 (80.36%), Query Frame = 1 
Query:    1 QHQEEREEYEKKFRQQLVEMDRIQHSLKQLQDTHMLMKQQYEDEIVRLRRQLDA-HPLKGDPDGRGGG-GSSTQGVSGGMSMGSTGPGQSHSSIASPQKGLGGMPT---HGLASPRKQQGQPEPGAASLRGPMLTAPPGSHMMGGXXXXXXXXXXGSGVVLPGMAMRGRGGPGEDDYGG-RGLGPNGQTMEPLSKRPRLAGLHGPPGPLPPHGSVLHPPHGFSQ 654
            QHQEEREEYEKKFRQQL EMDRIQHSLKQLQ+ HM+MKQQYEDEIVRLR QL++ HPLK DPD R GG GSS QGVSGGMSMGSTGP QSHSS   P KGLGGMP    HG+ SPRKQ GQ EPGAASLRGPMLTAP G+ MMGG          GSGVVLPGMAMRGR   GEDDYGG RG  PNGQT+EPLSKRPRLA L GPPGPLPPH  VLHPP GFSQ
Sbjct:   44 QHQEEREEYEKKFRQQLAEMDRIQHSLKQLQEAHMVMKQQYEDEIVRLRHQLESSHPLKSDPDSRVGGVGSSVQGVSGGMSMGSTGPSQSHSS-GPPHKGLGGMPAGGPHGVGSPRKQPGQLEPGAASLRGPMLTAP-GAQMMGGGGMGA-----GSGVVLPGMAMRGRD-HGEDDYGGGRGQRPNGQTLEPLSKRPRLADLQGPPGPLPPH--VLHPPPGFSQ 257
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A835Z1H0_9STRA (TUP1-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.190e-18
Identity = 53/98 (54.08%), Postives = 60/98 (61.22%), Query Frame = 1 
Query: 1183 VELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEADPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEG 1476
            VEL     L SVVCCVRFS DG+++A GSH CVKVFDV T      C    P P          DPYVR+VC SPDG  + A MENNSA+VL L E+G
Sbjct:   10 VELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG-----CSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDG 102
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A6A5ABM5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABM5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.770e-15
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 1 
Query: 1147 NRGSASA-RDGLEVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEA-DPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEGGQQGATTLSGHE 1512
            N+G+  A  +   VE+  + D +SVVCCVRFS DGTK+A+G H   +VFDV T  + +  ++P    ++    A EA D YVRAVCFSPDG  +VAGM  N+ ++    +    + A  L GHE
Sbjct:  209 NKGTGVADTERPHVEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPAI--KEGAAPANEAEDAYVRAVCFSPDGTKLVAGMPQNTIRIW---DMASNEEAPPLIGHE 327
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A024GJE4_9STRA (Tup_N domain-containing protein n=7 Tax=Albugo TaxID=65356 RepID=A0A024GJE4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.140e-15
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 1 
Query: 1186 ELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEA-----DPYVRAVCFSPDGLSIVAGMENNSAKV--LLLREEGGQQGATTLSGHE 1512
            E+ +S D +SVVCCVRFSTDGT +A+G H   +VFDV T  + +   +P P   +  G+ Q +     D YVRAVCFSPD   +VAGM +N+ ++  +   EEG       L+GHE
Sbjct:  325 EMHQSMDHQSVVCCVRFSTDGTMMASGCHKTAQVFDVKTGDRKFSVSRPGPSNGNAGGNTQSSGNDAEDAYVRAVCFSPDCTKLVAGMPHNTIRIWDIATNEEG-----PPLTGHE 435
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A397E6G9_9STRA (Tup_N domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E6G9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.450e-15
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 1 
Query: 1147 NRGSASA-RDGLEVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEA-DPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEGGQQGATTLSGHE 1512
            N+G+  A  +   VE+  + D +SVVCCVRFS DGTK+A+G H   +VFDV T  + +  ++P    ++    A EA D YVRAVCFSPDG  +VAGM  N+ ++    +    + A  L GHE
Sbjct:  406 NKGTGVADTERPHVEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPAI--KEGAAPANEAEDAYVRAVCFSPDGTKLVAGMPQNTIRIW---DMASNEEAPPLIGHE 524
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: W4HAK2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAK2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.570e-15
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 1 
Query: 1147 NRGSASA-RDGLEVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEA-DPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEGGQQGATTLSGHE 1512
            N+G+  A  +   VE+  + D +SVVCCVRFS DGTK+A+G H   +VFDV T  + +  ++P    ++    A EA D YVRAVCFSPDG  +VAGM  N+ ++    +    + A  L GHE
Sbjct:  458 NKGTGVADTERPHVEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPAI--KEGAAQANEAEDAYVRAVCFSPDGTKLVAGMPQNTIRIW---DMASNEEAPPLIGHE 576
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BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A0P1AQC9_PLAHL (WD40 repeat-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQC9_PLAHL)

HSP 1 Score: 89.7 bits (221), Expect = 3.960e-15
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1 
Query: 1186 ELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPV-----PLPQDDKGSAQEADPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEGGQQGATTLSGHE 1512
            E+ +S D +SVVCCVRFS+DGT +A+G H   +VFDV T  + Y+  +P      P  Q +  + +  D YVRAVCFSPD   +VAGM  N+ ++    + G  +    ++GHE
Sbjct:  424 EMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKYLVSRPAGSGHTPTSQANTAANEPDDAYVRAVCFSPDCTKLVAGMPQNTIRIW---DIGSNEEGLAMTGHE 534
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BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A067CVT3_SAPPC (Tup_N domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVT3_SAPPC)

HSP 1 Score: 89.4 bits (220), Expect = 4.300e-15
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1 
Query: 1147 NRGSASARDGLE---VELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQDDKGSAQEADPYVRAVCFSPDGLSIVAGMENNSAKV--LLLREEGGQQGATTLSGHE 1512
            N+GS++     E   VE+  + D +SVVCCVRFS DGTK+A+G H   +VFDV T  + +  ++P     +     +  D YVR+VCFSPDG  +VAGM  N+ ++  +   EEG       L GHE
Sbjct:  415 NKGSSTHFPETERPTVEMHHTLDHQSVVCCVRFSADGTKMASGCHKTAQVFDVATGARTFWVQRPAITNANGAQPNENEDAYVRSVCFSPDGTKLVAGMPQNTIRIWDIASNEEG-----PPLVGHE 536
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BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Match: A0A329SF69_9STRA (General transcriptional corepressor n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SF69_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.590e-15
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 1 
Query: 1186 ELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPV-----PLPQDDKGSAQEADPYVRAVCFSPDGLSIVAGMENNSAKV--LLLREEGGQQGATTLSGHE 1512
            E+ +S D +SVVCCVRFS+DGT +A+G H   +VFDV T  + ++  +P      P  Q +  + +  D YVRAVCFSPD   +VAGM  N+ +V  +   EEG       ++GHE
Sbjct:  156 EMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSGQTPTSQANAAANEPDDAYVRAVCFSPDCTKLVAGMPQNTIRVWDIASNEEG-----PAMTGHE 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10639.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC5_ECTSI9.050e-12971.76Tup_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J9G6_9PHAE3.330e-8677.23Tup_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z1H0_9STRA5.190e-1854.08TUP1-like protein (Fragment) n=1 Tax=Tribonema min... [more]
A0A6A5ABM5_9STRA1.770e-1542.74Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024GJE4_9STRA2.140e-1543.97Tup_N domain-containing protein n=7 Tax=Albugo Tax... [more]
A0A397E6G9_9STRA2.450e-1542.74Tup_N domain-containing protein n=10 Tax=Aphanomyc... [more]
W4HAK2_9STRA2.570e-1542.74Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A0P1AQC9_PLAHL3.960e-1541.23WD40 repeat-containing protein n=1 Tax=Plasmopara ... [more]
A0A067CVT3_SAPPC4.300e-1540.94Tup_N domain-containing protein n=4 Tax=Saprolegni... [more]
A0A329SF69_9STRA5.590e-1542.24General transcriptional corepressor n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10639contigH-canaliculatus_F_contig10639:114..4338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.4
Seed ortholog evalue1.9e-113
Seed eggNOG ortholog2880.D8LEC5
Preferred nameTUP1
KEGG koko:K06666,ko:K14963
KEGG Pathwayko04011,ko04111,ko04934,map04011,map04111,map04934
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_001730.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size1512
Cds size1512
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10639.622.1prot_H-canaliculatus_F_contig10639.622.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10639 114..4338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928720.8681288-CDS-H-canaliculatus_F_contig10639:113..2961622928720.8681288-CDS-H-canaliculatus_F_contig10639:113..296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 114..296 -
1696845538.7390435-CDS-H-canaliculatus_F_contig10639:113..2961696845538.7390435-CDS-H-canaliculatus_F_contig10639:113..296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 114..296 -
1622928720.8799086-CDS-H-canaliculatus_F_contig10639:1009..11261622928720.8799086-CDS-H-canaliculatus_F_contig10639:1009..1126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 1010..1126 -
1696845538.751067-CDS-H-canaliculatus_F_contig10639:1009..11261696845538.751067-CDS-H-canaliculatus_F_contig10639:1009..1126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 1010..1126 -
1622928720.8937168-CDS-H-canaliculatus_F_contig10639:1938..25751622928720.8937168-CDS-H-canaliculatus_F_contig10639:1938..2575Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 1939..2575 -
1696845538.75954-CDS-H-canaliculatus_F_contig10639:1938..25751696845538.75954-CDS-H-canaliculatus_F_contig10639:1938..2575Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 1939..2575 -
1622928720.906361-CDS-H-canaliculatus_F_contig10639:2941..33181622928720.906361-CDS-H-canaliculatus_F_contig10639:2941..3318Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 2942..3318 -
1696845538.7683108-CDS-H-canaliculatus_F_contig10639:2941..33181696845538.7683108-CDS-H-canaliculatus_F_contig10639:2941..3318Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 2942..3318 -
1622928720.918895-CDS-H-canaliculatus_F_contig10639:3593..37431622928720.918895-CDS-H-canaliculatus_F_contig10639:3593..3743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 3594..3743 -
1696845538.7778554-CDS-H-canaliculatus_F_contig10639:3593..37431696845538.7778554-CDS-H-canaliculatus_F_contig10639:3593..3743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 3594..3743 -
1622928720.934749-CDS-H-canaliculatus_F_contig10639:4290..43381622928720.934749-CDS-H-canaliculatus_F_contig10639:4290..4338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 4291..4338 -
1696845538.7865539-CDS-H-canaliculatus_F_contig10639:4290..43381696845538.7865539-CDS-H-canaliculatus_F_contig10639:4290..4338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10639 4291..4338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10639.622.1

>prot_H-canaliculatus_F_contig10639.622.1 ID=prot_H-canaliculatus_F_contig10639.622.1|Name=mRNA_H-canaliculatus_F_contig10639.622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=504bp
QHQEEREEYEKKFRQQLVEMDRIQHSLKQLQDTHMLMKQQYEDEIVRLRR
QLDAHPLKGDPDGRGGGGSSTQGVSGGMSMGSTGPGQSHSSIASPQKGLG
GMPTHGLASPRKQQGQPEPGAASLRGPMLTAPPGSHMMGGGGGGMGGGGA
GSGVVLPGMAMRGRGGPGEDDYGGRGLGPNGQTMEPLSKRPRLAGLHGPP
GPLPPHGSVLHPPHGFSQQQQHHHPPQQHQHQHQQQQQQQQQQHQQQHQP
HHHHHQGPGGGGNFGRAAAPPLGSISGGGSSGSNGGDSSNSGRRQAGGGQ
EGQHRWPGGGHPGPGGGADAPPPTGGSGQQRLGAGGGAPREARPSAAEIG
GSAGGGSGMVDIPDAIPAELSYQVRFEVGEDGNRGSASARDGLEVELAKS
QDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKPVPLPQD
DKGSAQEADPYVRAVCFSPDGLSIVAGMENNSAKVLLLREEGGQQGATTL
SGHE
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mRNA from alignment at H-canaliculatus_F_contig10639:114..4338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10639.622.1 ID=mRNA_H-canaliculatus_F_contig10639.622.1|Name=mRNA_H-canaliculatus_F_contig10639.622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4225bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10639:114..4338- (Hapterophycus canaliculatus Oshoro5f female)
CAACACCAGGAGGAGCGGGAGGAATACGAAAAGAAGTTCCGCCAACAGGT
ACGTGCGTCCGAGAGTCTTCCTTGCGTCCATGGACCGGGTTACTTGCGAA
CACCCATCCTTGCTAACAATAATGGTGGCGCATTTTGCCTCGGATTTTTG
CATCGAGTTGGGGTGGATCGCCTGGGTGACTCTGGAAAGTCAGCGGCGCC
TGCCGGTCCGAGCAGGAGAGCGAAGGCGCTCGGGCCATTCTAGACGGCCT
GTGTGCCCCCTGTTCGTTGAGGTGTGGATAGCGGCGTGTAACTGGTTGTA
CCCTTGGCGACTGGGGTAAGGTTGTGGGTCTTTTCAAGAGACGCGGAAGT
CGCGGATTGGTTAATCCCCGAAGGGGTCCCACGCCTCTCTGCCATGCGGT
GGGAGTCCCGCAACGCCCAGCGACCTCGACGACCCGTGTTGGCCATGCCA
CTCTACGGCCTCTTTCCGTCCGTCCCTTGGTCTCTCCCCGCCTGGCAACC
TCTCTTCCTCTCTGCGTCTCCCCTCACCCTCCTTGCCACCCGCACCTCCG
CGATCGTGACCTTGTCGTCGTTTCACCCGTGTTCTCCGCCCGTAGCTCGT
GGAGATGGACCGGATACAGCACTCCTTGAAACAGCTCCAAGACACTCACA
TGCTGATGAAACAGCAGTACGAAGACGAGATCGTCAGGCTCAGACGCCAG
CTCGACGCTCATCCGCTGAAGGGGGACCCGGACGGCCGTGGGGGGGTGAG
TTGATCAGGCTTAACCAGCAGGACAGCACTCCTCCTTTCTTGGTTATGTC
GCCGTCGCTGTGGTCGTCGACATTGTTGCTACCGCCGCCGCCGCCGCCGC
CGCCGCCGTCGCCGCCCCCTCTGTTTGTGTTGATTGTGTTCTTCCTTGTA
CCGCCGGCTTGAGGGGTTTCAATCCATTACTAAGTGCGGTCACGTTTCTT
TTCACTCGCCATTTCCTTTCGCTCCTTTCGTCACCGTTGCTTGCTCGCCC
TCGCGCCTCGCGCGCCCCAGGGAGGCAGTTCGACCCAGGGAGTGAGCGGC
GGGATGAGCATGGGCTCCACCGGCCCGGGCCAATCACACAGCAGCATCGC
TTCTCCCCAAAAGGGGCTGGGAGGCATGCCGACACACGGGCTAGCATCGC
CCCGCAAGCAACAGGGGCAGCCGGAACCAGGCGCGGCTAGCCTTCGCGGT
CCCATGCTGACGGCTCCCCCCGGGTCTCACATGATGGGAGGAGGAGGAGG
CGGTATGGGCGGCGGGGGAGCGGGGTCCGGCGTTGTGCTGCCCGGGATGG
CGATGCGCGGCAGGGGCGGCCCGGGGGAGGATGACTACGGCGGGAGAGGG
CTAGGACCGAACGGGCAGACGATGGAACCTCTGAGCAAGCGGCCAAGGTG
GGGAGAGCCCCGCGCGGCCGGATGACGTTACGACCGGGCCGTCGCTTTTG
TCGCTGGCGTTGGTGGTGTAGTTGGTGGCGAGTTGATGAGTGACGAGGGC
TGGGGCATGCTGTTTGTTTGCGGCGGGTCGTGTCCCCGTTGGCGCTGCTT
TTGATGCTGACTTTGGCCTTGTTGCTTGTCGCTAGTCTCGTTCTGTCGCA
GCTTACACCCTCTAGACCCACGGGTACGAGGGGGGAGCGCAGCGGCAAAA
ATCATACCGCTGTGAGTCGTTGTCTCAGTTTCCACCGCTGTTCCGGCCAC
GGCATCCCACCGCGCCGCACCGCACCTTACCCTGCTGCACCGACGCCCAA
ACACCCCCACCAGGCTGGCAGGCCTTCACGGACCCCCGGGCCCGTTGCCG
CCCCACGGCAGCGTCCTCCACCCCCCGCACGGCTTCAGCCAACAGCAGCA
GCACCACCACCCACCGCAGCAGCACCAACACCAGCACCAGCAACAACAGC
AACAACAGCAACAACAACATCAGCAGCAGCACCAGCCTCACCACCATCAC
CACCAAGGACCAGGTGGAGGGGGGAACTTCGGGCGTGCCGCCGCCCCACC
TCTAGGAAGCATCAGCGGCGGCGGCAGCAGCGGCAGCAACGGCGGCGACA
GTAGCAACAGCGGCCGCCGTCAGGCCGGAGGAGGTCAGGAGGGCCAGCAT
AGATGGCCCGGGGGCGGGCATCCTGGTCCCGGCGGAGGTGCTGATGCGCC
GCCGCCGACTGGTGGATCGGGACAGCAGAGGCTTGGGGCCGGAGGAGGGG
CGCCGAGAGAGGCCAGGCCTTCGGCGGCGGAGATAGGGGGTAGCGCGGGC
GGGGGGAGCGGGATGGTGGATATCCCGGATGCCATCCCGGCGGAGCTGAG
TTATCAAGTGAGGTTCGAGGTGGGGGAAGATGGGAACAGAGGGTCGGCCT
CGGCGAGGGACGGGCTTGAGGTGGAGCTGGCCAAGTCTCAAGACCTCAGG
GTGAGAAAAAGAGGGCATTGGGGGCGGGGGCGTGGGGGAAGGGGTCCATT
CCGGGATTTTGCACTCGTGGTATTGTACTGCCGAAGTGTTTGCTGTGTGT
CGTGGTTTTGTCTTGCCTCATTTTGTCATGGTGGGCGTTGCTCGGGCGGG
CCCGAGGTGTTGAACACCTTGTGAAAACCACGCATAGATGTATCAGTGTT
GAGGCAGAGGAGAGGGGGCTACATCTTCGTCATCTCCGTCGAGGGGGGTC
CCGTGAGGTGCGTACAGGGCGTACTGGGGGCGGTGCGTGCCACTGCAGAC
GCCGTCATGCGCACAGGGTGTCTGTTGCTTGTTTTCGGTGTCGTTCTGCG
GGGTGTTGACTCACCGCATGGTCGGGAGTGCGGTTCTCCTGCCATCCGCC
ACGTGTCGTTTCTGCCTGTGGCCTGAAAGCGTTTTGGACTTGTTCTTTCT
TGGACAGATAAGCTTTCGGCTCCGCATTTTTTCGTCCCGTGCGCTACGGT
TCGGGATTTGGTCCTCTTCCTCACTGTGCGGTCCGTGAGCCTAGTCGATT
CCTTTTGTACGTGTATGCGTGCGTGCGTGTTGTTTGTCAGCGCCGGCCAC
TGCAAACCCGTCAACCAAGTGCAAGCATCACGCTACATGTAAGCGTGTCT
GTGTGCGTTCCTCAAGAGTACCCAGAGTTTGTCTTTATCCCAAGGCAAGC
GCGCACTGCACGTCGGGCAGCCACCCACCTCACCGCTCCCGCGCGCCTTT
CGTCCCTCCGCGTTTCGTCGGCGGCGTAACCCGCGCCGCTTGGCTTCCCC
CCGCCGCACCAGAGCGTGGTGTGCTGCGTGCGGTTCAGCACAGACGGAAC
GAAGATCGCCGCGGGTAGCCACTCTTGCGTTAAGGTCTTCGACGTCAACA
CCTTTAAGCAGCTTTACGTCTGCCGCAAGGTAACGATCTGAGAGAGGAGA
GGGGAGATGTGGCAGCTTCGCCCGTCGTCGCGGTCACTTGTTTGTTCTTT
GGCGCGGAACGTGGCGCATGTTTCCGAGCGGGCCGTGAGAACGAGGTTCT
CCGGTGGTGCGCACGCAGCCGAGAAGGGTGGCCGGTATCCTGTCGACAGC
CGTTTCCTGAAGTTTGACGTCAAGCGCCGGCTCATTAGTTGAGACACGCC
GTCCCACGCCCGTCACAGTGGTCGGGCGTGAAGAACTTTGCCTATCGCGC
GCAAGCAGCGCCTATTTAAGCGAGGGCTACGGAGGGATCCCCGGAGCGCG
AGTGGGGGGTAGGTTACCTCAAAGTAGGCTTCGTCCGCTGAGTCGGCTCT
GCTGCTGCACCCCTGCGGTGCAGGCAGCCGCTTTCCCGCTTGCCTTGCCC
TGTATCTGCCGATGAGCGCCTGCCTCGTCGCGAGTGTCAGGGGACGGATG
AAAGGTTCGAGGTGGACCCCCATTTCTTTCCGAAGGGAAAAGTGAGGAAG
TTCATCCTTGCCCGACGTGGGGCACCAGCCGTGCGGGGCTCTCGGCGCGG
AGGCGCTCCGTCACCTCCATCACCCGCATCACTCCCGTCGTAGCCTCACT
TCTTTCCGCTGCGCGTCTGCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGC
TGCGATTTTGCCGGGGTCGATTCGTGCTCTCCCGCTCCCCAGCCGGTGCC
GTTGCCGCAGGACGACAAAGGCTCCGCCCAAGAGGCAGATCCCTACGTCC
GCGCGGTGTGCTTCAGCCCGGACGGGCTGTCCATCGTGGCGGGGATGGAG
AACAACAGCGCGAAGGTGTTGCTGCTCAGGGAGGAGGGGGGCCAGCAAGG
GGCAACCACGCTGTCGGGGCACGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10639:114..4338-

>mRNA_H-canaliculatus_F_contig10639.622.1 ID=mRNA_H-canaliculatus_F_contig10639.622.1|Name=mRNA_H-canaliculatus_F_contig10639.622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3024bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10639:114..4338- (Hapterophycus canaliculatus Oshoro5f female)
CAACACCAGGAGGAGCGGGAGGAATACGAAAAGAAGTTCCGCCAACAGCA
ACACCAGGAGGAGCGGGAGGAATACGAAAAGAAGTTCCGCCAACAGCTCG
TGGAGATGGACCGGATACAGCACTCCTTGAAACAGCTCCAAGACACTCAC
ATGCTGATGAAACAGCAGTACGAAGACGAGATCGTCAGGCTCAGACGCCA
GCTCGACGCTCATCCGCTGAAGGGGGACCCGGACGGCCGTGGGGGGCTCG
TGGAGATGGACCGGATACAGCACTCCTTGAAACAGCTCCAAGACACTCAC
ATGCTGATGAAACAGCAGTACGAAGACGAGATCGTCAGGCTCAGACGCCA
GCTCGACGCTCATCCGCTGAAGGGGGACCCGGACGGCCGTGGGGGGGGAG
GCAGTTCGACCCAGGGAGTGAGCGGCGGGATGAGCATGGGCTCCACCGGC
CCGGGCCAATCACACAGCAGCATCGCTTCTCCCCAAAAGGGGCTGGGAGG
CATGCCGACACACGGGCTAGCATCGCCCCGCAAGCAACAGGGGCAGCCGG
AACCAGGCGCGGCTAGCCTTCGCGGTCCCATGCTGACGGCTCCCCCCGGG
TCTCACATGATGGGAGGAGGAGGAGGCGGTATGGGCGGCGGGGGAGCGGG
GTCCGGCGTTGTGCTGCCCGGGATGGCGATGCGCGGCAGGGGCGGCCCGG
GGGAGGATGACTACGGCGGGAGAGGGCTAGGACCGAACGGGCAGACGATG
GAACCTCTGAGCAAGCGGCCAAGGGAGGCAGTTCGACCCAGGGAGTGAGC
GGCGGGATGAGCATGGGCTCCACCGGCCCGGGCCAATCACACAGCAGCAT
CGCTTCTCCCCAAAAGGGGCTGGGAGGCATGCCGACACACGGGCTAGCAT
CGCCCCGCAAGCAACAGGGGCAGCCGGAACCAGGCGCGGCTAGCCTTCGC
GGTCCCATGCTGACGGCTCCCCCCGGGTCTCACATGATGGGAGGAGGAGG
AGGCGGTATGGGCGGCGGGGGAGCGGGGTCCGGCGTTGTGCTGCCCGGGA
TGGCGATGCGCGGCAGGGGCGGCCCGGGGGAGGATGACTACGGCGGGAGA
GGGCTAGGACCGAACGGGCAGACGATGGAACCTCTGAGCAAGCGGCCAAG
GCTGGCAGGCCTTCACGGACCCCCGGGCCCGTTGCCGCCCCACGGCAGCG
TCCTCCACCCCCCGCACGGCTTCAGCCAACAGCAGCAGCACCACCACCCA
CCGCAGCAGCACCAACACCAGCACCAGCAACAACAGCAACAACAGCAACA
ACAACATCAGCAGCAGCACCAGCCTCACCACCATCACCACCAAGGACCAG
GTGGAGGGGGGAACTTCGGGCGTGCCGCCGCCCCACCTCTAGGAAGCATC
AGCGGCGGCGGCAGCAGCGGCAGCAACGGCGGCGACAGTAGCAACAGCGG
CCGCCGTCAGGCCGGAGGAGGTCAGGAGGGCCAGCATAGATGGCCCGGGG
GCGGGCATCCTGGTCCCGGCGGAGGTGCTGATGCGCCGCCGCCGACTGGT
GGATCGGGACAGCAGAGGCTTGGGGCCGGAGGAGGGGCGCCGAGAGAGGC
CAGGCCTTCGGCGGCGGAGATAGGGGGTAGCGCGGGCGGGGGGAGCGGGA
TGGTGGATATCCCGGATGCCATCCCGGCGGAGCTGAGTTATCAAGTGAGG
TTCGAGGTGGGGGAAGATGGGAACAGAGGGTCGGCCTCGGCGAGGGACGG
GCTTGAGGTGGAGCTGGCCAAGTCTCAAGACCTCAGGGCTGGCAGGCCTT
CACGGACCCCCGGGCCCGTTGCCGCCCCACGGCAGCGTCCTCCACCCCCC
GCACGGCTTCAGCCAACAGCAGCAGCACCACCACCCACCGCAGCAGCACC
AACACCAGCACCAGCAACAACAGCAACAACAGCAACAACAACATCAGCAG
CAGCACCAGCCTCACCACCATCACCACCAAGGACCAGGTGGAGGGGGGAA
CTTCGGGCGTGCCGCCGCCCCACCTCTAGGAAGCATCAGCGGCGGCGGCA
GCAGCGGCAGCAACGGCGGCGACAGTAGCAACAGCGGCCGCCGTCAGGCC
GGAGGAGGTCAGGAGGGCCAGCATAGATGGCCCGGGGGCGGGCATCCTGG
TCCCGGCGGAGGTGCTGATGCGCCGCCGCCGACTGGTGGATCGGGACAGC
AGAGGCTTGGGGCCGGAGGAGGGGCGCCGAGAGAGGCCAGGCCTTCGGCG
GCGGAGATAGGGGGTAGCGCGGGCGGGGGGAGCGGGATGGTGGATATCCC
GGATGCCATCCCGGCGGAGCTGAGTTATCAAGTGAGGTTCGAGGTGGGGG
AAGATGGGAACAGAGGGTCGGCCTCGGCGAGGGACGGGCTTGAGGTGGAG
CTGGCCAAGTCTCAAGACCTCAGGAGCGTGGTGTGCTGCGTGCGGTTCAG
CACAGACGGAACGAAGATCGCCGCGGGTAGCCACTCTTGCGTTAAGGTCT
TCGACGTCAACACCTTTAAGCAGCTTTACGTCTGCCGCAAGAGCGTGGTG
TGCTGCGTGCGGTTCAGCACAGACGGAACGAAGATCGCCGCGGGTAGCCA
CTCTTGCGTTAAGGTCTTCGACGTCAACACCTTTAAGCAGCTTTACGTCT
GCCGCAAGCCGGTGCCGTTGCCGCAGGACGACAAAGGCTCCGCCCAAGAG
GCAGATCCCTACGTCCGCGCGGTGTGCTTCAGCCCGGACGGGCTGTCCAT
CGTGGCGGGGATGGAGAACAACAGCGCGAAGGTGTTGCTGCTCAGGGAGG
AGGGGGGCCAGCAAGGGGCAACCACGCTGTCGGGGCACGAGCCGGTGCCG
TTGCCGCAGGACGACAAAGGCTCCGCCCAAGAGGCAGATCCCTACGTCCG
CGCGGTGTGCTTCAGCCCGGACGGGCTGTCCATCGTGGCGGGGATGGAGA
ACAACAGCGCGAAGGTGTTGCTGCTCAGGGAGGAGGGGGGCCAGCAAGGG
GCAACCACGCTGTCGGGGCACGAG
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