mRNA_H-canaliculatus_F_contig10632.617.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10632.617.1
Unique NamemRNA_H-canaliculatus_F_contig10632.617.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Match: A0A2U1P858_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P858_ARTAN)

HSP 1 Score: 53.5 bits (127), Expect = 2.900e-5
Identity = 36/117 (30.77%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:   25 TSMIAGVDHVLAPLLEGEDWIADSGCTFHTTGDPRLMFNFQRVPFEQSRLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHAGQRKQEIVLDNDAVHIFDR 375
            T +  G+D      LE ++W+ DSGCT H TG+ +L  ++         +   + +  N++GKG+I       T   LT+ +V  V+N+ FNLLS++        + DND   IF +
Sbjct:  579 TRICLGID------LEPDEWVKDSGCTNHMTGNRKLFSSYNAS--SGGNVTFGSKLKGNIIGKGTI-------THNSLTISNVEHVDNLGFNLLSINQ-------ICDNDCKVIFSK 673
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BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Match: A0A7H4LG88_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LG88_WHEAT)

HSP 1 Score: 53.1 bits (126), Expect = 3.750e-5
Identity = 40/137 (29.20%), Postives = 63/137 (45.99%), Query Frame = 1 
Query:   70 EGEDWIADSGCTFHTTGDPRLMFNFQRVPFEQSRLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHAGQRKQEIVLDNDAVHIFD--RCLTFPRASSGSHLRAHRVPEPSL-DYHALPALA 471
            +  +WI DSGCT H TGD  L  +    P ++S +  A+     VLG G + +      D       V+LVE++ FNL+S+        ++ D + + IF   RCL    +        +R  +  + D+ A P LA
Sbjct:  429 KASEWIMDSGCTNHMTGDRSLHMDSTLRPSDKSHITFADTGKSKVLGLGRVAISKDQHMD------KVMLVESLGFNLMSV-------SMLCDLNMIVIFGKYRCLVLMESDKSLVFEGYRKDDLYMVDFSARPQLA 552
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BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Match: A0A7H4LI56_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LI56_WHEAT)

HSP 1 Score: 52.0 bits (123), Expect = 9.790e-5
Identity = 39/133 (29.32%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:   79 DWIADSGCTFHTTGDPRLMFNFQRVPFEQSRLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHAGQRKQEIVLDNDAVHIFD--RCLTFPRASSGSHLRAHRVPEPSL-DYHALPAL 468
            +WI DSGCT H TGD  L+ +    P ++S +  AN     VLG G   +      D       V+LVE++ FNL+ +        ++ D + + IF   RCL    +        +R  +  + D+ A P L
Sbjct:  403 EWIMDSGCTNHMTGDRNLLMDSTLCPSDKSHITFANTGKSKVLGLGRFAISKDQHMD------KVMLVESLGFNLMPV-------SMLCDLNMIVIFGKYRCLVLMESDKSLVFEGYRKDDLYMVDFSAGPQL 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2U1P858_ARTAN2.900e-530.77Uncharacterized protein n=1 Tax=Artemisia annua Ta... [more]
A0A7H4LG88_WHEAT3.750e-529.20Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]
A0A7H4LI56_WHEAT9.790e-529.32Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10632contigH-canaliculatus_F_contig10632:4280..4759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size462
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928720.346598-UTR-H-canaliculatus_F_contig10632:4279..42971622928720.346598-UTR-H-canaliculatus_F_contig10632:4279..4297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10632 4280..4297 +
1696845538.4788947-UTR-H-canaliculatus_F_contig10632:4279..42971696845538.4788947-UTR-H-canaliculatus_F_contig10632:4279..4297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10632 4280..4297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928720.3588872-CDS-H-canaliculatus_F_contig10632:4297..47591622928720.3588872-CDS-H-canaliculatus_F_contig10632:4297..4759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10632 4298..4759 +
1696845538.4924397-CDS-H-canaliculatus_F_contig10632:4297..47591696845538.4924397-CDS-H-canaliculatus_F_contig10632:4297..4759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10632 4298..4759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10632.617.1prot_H-canaliculatus_F_contig10632.617.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10632 4298..4759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10632.617.1

>prot_H-canaliculatus_F_contig10632.617.1 ID=prot_H-canaliculatus_F_contig10632.617.1|Name=mRNA_H-canaliculatus_F_contig10632.617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
MPTSMIAGVDHVLAPLLEGEDWIADSGCTFHTTGDPRLMFNFQRVPFEQS
RLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHA
GQRKQEIVLDNDAVHIFDRCLTFPRASSGSHLRAHRVPEPSLDYHALPAL
APPP
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mRNA from alignment at H-canaliculatus_F_contig10632:4280..4759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10632.617.1 ID=mRNA_H-canaliculatus_F_contig10632.617.1|Name=mRNA_H-canaliculatus_F_contig10632.617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10632:4280..4759+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGATTTTACGTCGGCCATGCCAACGTCGATGATTGCAGGAGTTGACCA
TGTTCTTGCTCCCCTCCTCGAGGGAGAGGATTGGATTGCCGATAGTGGTT
GCACGTTCCACACGACAGGGGACCCGCGTCTCATGTTCAACTTCCAGCGC
GTTCCGTTTGAACAGAGTAGGCTGGCGATAGCGAACGGAATTGCTCTGAA
CGTCTTGGGGAAGGGAAGCATCCATCTCATAATGCACGCTCAAACAGATT
TCCCGCTGACGCTGCACGATGTGCTTTTGGTGGAAAACATGAGGTTCAAC
CTCCTTTCGCTGCATGCCGGGCAGCGCAAACAGGAGATTGTCTTGGATAA
CGATGCTGTTCATATTTTCGACCGCTGTCTGACTTTCCCCCGGGCATCCA
GTGGTTCGCACTTGCGTGCTCACCGGGTGCCCGAGCCTTCTTTGGACTAC
CACGCTTTGCCTGCCCTTGCCCCGCCGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10632:4280..4759+

>mRNA_H-canaliculatus_F_contig10632.617.1 ID=mRNA_H-canaliculatus_F_contig10632.617.1|Name=mRNA_H-canaliculatus_F_contig10632.617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10632:4280..4759+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAACGTCGATGATTGCAGGAGTTGACCATGTTCTTGCTCCCCTCCT
CGAGGGAGAGGATTGGATTGCCGATAGTGGTTGCACGTTCCACACGACAG
GGGACCCGCGTCTCATGTTCAACTTCCAGCGCGTTCCGTTTGAACAGAGT
AGGCTGGCGATAGCGAACGGAATTGCTCTGAACGTCTTGGGGAAGGGAAG
CATCCATCTCATAATGCACGCTCAAACAGATTTCCCGCTGACGCTGCACG
ATGTGCTTTTGGTGGAAAACATGAGGTTCAACCTCCTTTCGCTGCATGCC
GGGCAGCGCAAACAGGAGATTGTCTTGGATAACGATGCTGTTCATATTTT
CGACCGCTGTCTGACTTTCCCCCGGGCATCCAGTGGTTCGCACTTGCGTG
CTCACCGGGTGCCCGAGCCTTCTTTGGACTACCACGCTTTGCCTGCCCTT
GCCCCGCCGCCTATGCCAACGTCGATGATTGCAGGAGTTGACCATGTTCT
TGCTCCCCTCCTCGAGGGAGAGGATTGGATTGCCGATAGTGGTTGCACGT
TCCACACGACAGGGGACCCGCGTCTCATGTTCAACTTCCAGCGCGTTCCG
TTTGAACAGAGTAGGCTGGCGATAGCGAACGGAATTGCTCTGAACGTCTT
GGGGAAGGGAAGCATCCATCTCATAATGCACGCTCAAACAGATTTCCCGC
TGACGCTGCACGATGTGCTTTTGGTGGAAAACATGAGGTTCAACCTCCTT
TCGCTGCATGCCGGGCAGCGCAAACAGGAGATTGTCTTGGATAACGATGC
TGTTCATATTTTCGACCGCTGTCTGACTTTCCCCCGGGCATCCAGTGGTT
CGCACTTGCGTGCTCACCGGGTGCCCGAGCCTTCTTTGGACTACCACGCT
TTGCCTGCCCTTGCCCCGCCGCCT
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