mRNA_H-canaliculatus_F_contig10632.617.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Match: A0A2U1P858_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P858_ARTAN) HSP 1 Score: 53.5 bits (127), Expect = 2.900e-5 Identity = 36/117 (30.77%), Postives = 59/117 (50.43%), Query Frame = 1 Query: 25 TSMIAGVDHVLAPLLEGEDWIADSGCTFHTTGDPRLMFNFQRVPFEQSRLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHAGQRKQEIVLDNDAVHIFDR 375
T + G+D LE ++W+ DSGCT H TG+ +L ++ + + + N++GKG+I T LT+ +V V+N+ FNLLS++ + DND IF +
Sbjct: 579 TRICLGID------LEPDEWVKDSGCTNHMTGNRKLFSSYNAS--SGGNVTFGSKLKGNIIGKGTI-------THNSLTISNVEHVDNLGFNLLSINQ-------ICDNDCKVIFSK 673
BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Match: A0A7H4LG88_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LG88_WHEAT) HSP 1 Score: 53.1 bits (126), Expect = 3.750e-5 Identity = 40/137 (29.20%), Postives = 63/137 (45.99%), Query Frame = 1 Query: 70 EGEDWIADSGCTFHTTGDPRLMFNFQRVPFEQSRLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHAGQRKQEIVLDNDAVHIFD--RCLTFPRASSGSHLRAHRVPEPSL-DYHALPALA 471
+ +WI DSGCT H TGD L + P ++S + A+ VLG G + + D V+LVE++ FNL+S+ ++ D + + IF RCL + +R + + D+ A P LA
Sbjct: 429 KASEWIMDSGCTNHMTGDRSLHMDSTLRPSDKSHITFADTGKSKVLGLGRVAISKDQHMD------KVMLVESLGFNLMSV-------SMLCDLNMIVIFGKYRCLVLMESDKSLVFEGYRKDDLYMVDFSARPQLA 552
BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Match: A0A7H4LI56_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LI56_WHEAT) HSP 1 Score: 52.0 bits (123), Expect = 9.790e-5 Identity = 39/133 (29.32%), Postives = 60/133 (45.11%), Query Frame = 1 Query: 79 DWIADSGCTFHTTGDPRLMFNFQRVPFEQSRLAIANGIALNVLGKGSIHLIMHAQTDFPLTLHDVLLVENMRFNLLSLHAGQRKQEIVLDNDAVHIFD--RCLTFPRASSGSHLRAHRVPEPSL-DYHALPAL 468
+WI DSGCT H TGD L+ + P ++S + AN VLG G + D V+LVE++ FNL+ + ++ D + + IF RCL + +R + + D+ A P L
Sbjct: 403 EWIMDSGCTNHMTGDRNLLMDSTLCPSDKSHITFANTGKSKVLGLGRFAISKDQHMD------KVMLVESLGFNLMPV-------SMLCDLNMIVIFGKYRCLVLMESDKSLVFEGYRKDDLYMVDFSAGPQL 522 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10632.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10632.617.1 >prot_H-canaliculatus_F_contig10632.617.1 ID=prot_H-canaliculatus_F_contig10632.617.1|Name=mRNA_H-canaliculatus_F_contig10632.617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp MPTSMIAGVDHVLAPLLEGEDWIADSGCTFHTTGDPRLMFNFQRVPFEQSback to top mRNA from alignment at H-canaliculatus_F_contig10632:4280..4759+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10632.617.1 ID=mRNA_H-canaliculatus_F_contig10632.617.1|Name=mRNA_H-canaliculatus_F_contig10632.617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10632:4280..4759+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10632:4280..4759+ >mRNA_H-canaliculatus_F_contig10632.617.1 ID=mRNA_H-canaliculatus_F_contig10632.617.1|Name=mRNA_H-canaliculatus_F_contig10632.617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10632:4280..4759+ (Hapterophycus canaliculatus Oshoro5f female)back to top |