mRNA_H-canaliculatus_F_contig1063.615.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1063.615.1
Unique NamemRNA_H-canaliculatus_F_contig1063.615.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A6H5L2F9_9PHAE (DUF3395 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2F9_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 8.110e-98
Identity = 188/295 (63.73%), Postives = 207/295 (70.17%), Query Frame = 2
Query:  905 SLQRGAMVFELPVLLSSLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQEAESGGMVILSARYGAELPRDCGREWWANAVPHSS-GASAAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPP------SSWVEGSAGFLGGGEGAPHRQARDDWGF-----WGDDRPPAPAKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSGVR 1753
            SLQRGAMVFELPVLLSSL T W LTCGG+LPAL DAGVGWL+SS WQRRAER R E EP  RRRLA+ W DAA+Q RLM HMADK+R +E E GG+VIL ARYGA+L RDCG  WWA A  +++ G   A  P        A+PLS +V SEGPE AAA+ELVSQPNVDVTVPLQFFV+DSTLTLP  SKSHLLGFFTPA CR P      S + EG+             Q RD WG      WG   P A A  QL +RY FAGRTFEETF D QEV LPSP+STY GDS VR
Sbjct:  257 SLQRGAMVFELPVLLSSLLTGWTLTCGGLLPALVDAGVGWLLSSAWQRRAERLRSEGEPLRRRRLARDWGDAASQVRLMVHMADKRRHEEMEKGGLVILLARYGADLSRDCGERWWAQAPQNAAAGGGTAGTP--------AMPLSGLVESEGPEGAAAVELVSQPNVDVTVPLQFFVKDSTLTLPFGSKSHLLGFFTPAPCRLPRREPRYSDYREGA-----------RSQERDGWGGEGTGGWGSPLPAAAA--QLRIRYLFAGRTFEETFRDCQEVVLPSPTSTYLGDSSVR 530          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: D7G304_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G304_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 9.830e-96
Identity = 190/294 (64.63%), Postives = 208/294 (70.75%), Query Frame = 2
Query:  908 LQRGAMVFELPVLLSSLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQEAESGGMVILSARYGAELPRDCGREWWANAVPHSS-GASAAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACR-----PPSSWVEGSAGFLGGGEGAPHRQARDDWGF-----WGDDRPPAPAKA-QLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSGVR 1753
            ++RGAMVFELPVLLSSL T W LTCGG+LPAL DAGVGWL+SS WQRRAER R E EP  RRRLA+ W DAA+Q RLM HMADK+R +E E GGMVIL ARYGA+L RDCG  WWA A  +++ G   A  P        A+PLS +V SEGPE AAA+ELVSQPNVDVTVPLQFFV+DSTLTLP  SKSHLLGFFTPA CR     PPSS            EGA H Q R  WG      WG   PP PA A QL +RY FAGRTFEETF D QEV LPSP+S Y GDS VR
Sbjct:  360 VERGAMVFELPVLLSSLLTGWTLTCGGLLPALVDAGVGWLLSSAWQRRAERLRSEGEPLRRRRLARDWGDAASQVRLMVHMADKRRHEEKEKGGMVILLARYGADLSRDCGERWWAQAPQNAAAGGGTAGTP--------AMPLSGLVESEGPEGAAAVELVSQPNVDVTVPLQFFVKDSTLTLPFGSKSHLLGFFTPAPCRLPRREPPSSDYR---------EGA-HSQERYGWGGEGTAGWG---PPLPAAAAQLRIRYLFAGRTFEETFRDCQEVVLPSPTSAYLGDSDVR 632          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: K3W6H1_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6H1_GLOUD)

HSP 1 Score: 98.2 bits (243), Expect = 2.780e-17
Identity = 96/294 (32.65%), Postives = 132/294 (44.90%), Query Frame = 2
Query:  914 RGAMVFELPVLLS--SLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKK---RKQEAESGGMVILSARYGAEL----PRDCGREWWANAVPHSSGAS-------AAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSG 1747
            RG++ F +P+ LS  S  T+++  C    P L  A V  L+    +++  R+         + L  A   A  Q +LM   A KK    KQ+A+  G+VIL ARYG       PR+   +   + V +S G +       A    G DG                 +  AA EL+ Q  VDVTVPLQFFV+DS+L+L   SK+ LLGF+ P                        H Q+  D      D   A  K +LYVRY + G+ FE TF+DDQ V LPS  +   G +G
Sbjct:  383 RGSVRFVMPIFLSPFSAQTAFSTFCAATSPFLVSAVVTQLLKPAQEKKRRRELEHRREIRVQYLTTARQCAIAQQKLMMQCAQKKMEKEKQKADKKGLVILVARYGKNPTSPDPRERQGDTADSDVLYSGGGAESDSEDEARRGEGADG-----------------DQEAAAELLEQKWVDVTVPLQFFVKDSSLSLHGTSKAGLLGFYNPCI---------------------DHDQSVQDT----QDLSFAADKPKLYVRYAYDGKVFEATFEDDQVVDLPSRYAQVMGSAG 634          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A8K1FHR5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHR5_PYTOL)

HSP 1 Score: 89.4 bits (220), Expect = 1.570e-14
Identity = 92/286 (32.17%), Postives = 125/286 (43.71%), Query Frame = 2
Query:  914 RGAMVFELPVLLS--SLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQE-----AESGGMVILSARYGAELPRDCGREWWANAVPHSSGASAAAAPGNDGGSGGAVPL-SAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSG 1747
            RG++ F +P+ LS  S  T+++       P +  A V  L+    +R+  R         R  L+ A   A +Q +LM   AD+KR+ E      +  G+VI+ ARYG +           N  P  + A+     G+D  S    P  S    S   EA  A EL  Q  VDVT+P+QFFVQDS++TLP  SK+ LLGF+ P A                                 GDD      + QLYVRY +    FE TF D Q V LPS  +   G +G
Sbjct:  375 RGSVRFVMPIFLSPFSAQTAFSTFIAATTPFVISAVVTQLVQPAQERKRRRALEHRHEMRRHYLSSARRSALSQQQLMVRCADEKRQAEHQRTQRDGKGLVIILARYGKDPT---------NPDPMDATAATRVPQGSD--SDDETPTESEPTRSVDDEADEATELARQ-WVDVTIPMQFFVQDSSVTLPASSKASLLGFYNPCA---------------------------------GDDSAQTE-EPQLYVRYAYDSLVFEATFRDAQAVQLPSRYARVMGAAG 614          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A5D6XK84_9STRA (J domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK84_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.760e-14
Identity = 94/287 (32.75%), Postives = 126/287 (43.90%), Query Frame = 2
Query:  914 RGAMVFELPVLLS--SLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQE---AESGGMVILSARYGAEL----PRDCGREWWANAVPHSSGASAAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSG 1747
            RG++ F +P+ LS  S  T++A  C    P +  A V  L+    +     +         + LA A   A  Q RLM   A +K ++E   A+  G+V+L ARYG       PR+  R      +P  +  S                          EAAAA  ++ Q  +DVT+PLQFFVQDSTL+L   SK+ LLGF+ P      S  VE +A        A   Q  D+             K +LYVRY + GR FE TFDD Q V LPS  +   G  G
Sbjct:  332 RGSVRFVMPIFLSPFSAQTAFATFCAATSPFVVAAVVTQLLKPAEEXXXXXELERRRDVRVQYLAAARESAVAQQRLMVRCAQEKLEKETRKADKKGLVVLVARYGKNPTSADPREPRRGDVLETLPVFAAGSXXXXXXXX------XXXXXXXXXXXSEAAAA--ILEQRWIDVTIPLQFFVQDSTLSLHGRSKAGLLGFYNPCIANDQS--VEDTAS-------AQEPQDPDE-------------KPKLYVRYAYDGRVFEATFDDSQVVELPSRFAQVMGPVG 588          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A662Y3Z1_9STRA (J domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3Z1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-10
Identity = 91/315 (28.89%), Postives = 127/315 (40.32%), Query Frame = 2
Query:  914 RGAMVFELPVLLS--SLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRK--QEAESG-GMVILSARYGAELPRDCGREWWANAVPHSSGASAAAAP--GNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFV-------------------------QDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQ-----LYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSG 1747
            RG++ F +P+ LS  S  T+++  C    P +  A V  L+    +R+  R+      A  + LA A   A  Q +LM   A +K +  Q+ E G G+++L ARYG        RE    +    +   A      G + G  G       ++ +  +AA    L+ Q  VDVTVPLQFFV                         QD  L+L   SK+ LLGF+ P                                   G+D+  A A+A      LYVRY + G  FE TFDDDQ V LPS  +   G  G
Sbjct:  388 RGSVRFVMPIFLSPFSAQTAFSTFCAATSPFVVAAVVTQLVKPAQERKRRRELEHRHDARVQYLATARQGALEQQKLMRRSAKEKMELEQQREDGKGLLVLLARYGKNPTSSDSRELRGGSDELDAALQAMREQDMGREDGEDGETGSGDSISQQEADAA----LLEQKWVDVTVPLQFFVNVRGSASYRTATVLWLSCFDCDVLLQDGALSLSSASKAGLLGFYNPCI---------------------------------GEDQTIADARASTVKPLLYVRYAYDGHVFEATFDDDQVVNLPSRYAQVMGPLG 665          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A024TUS9_9STRA (DUF3395 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUS9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.200e-9
Identity = 73/282 (25.89%), Postives = 103/282 (36.52%), Query Frame = 2
Query:  914 RGAMVFELPVLLSSLFTS--WALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQEAESGGMVILSARYGAE--LPRDCGREWWANAVPHSSGASAAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSG 1747
            RG + F +PV+++ L T+  W        P L  A VG ++    +R+ +  R          L +A   A +Q  LM   A K     A  GG+ +L ARYG       DC    + +                                               NVDVT+P+QFF+Q+  L LP  SK+ LLGF+ P                                G +       PA+  LY+RY F G  +E TF D Q+V LPS  + + G  G
Sbjct:  251 RGNVRFVVPVVVAPLSTANAWNTLVAATAPFLVAAVVGQVVKPARKRKEQAARQSAHARRVSYLMEARRCALSQQTLMGKQAAK---NTALDGGVNVLVARYGQNPSTAHDCDESSFEHV----------------------------------------------NVDVTIPVQFFLQNGRLYLPSTSKAGLLGFYNPML------------------------------GLYDPADASHPAQPHLYIRYAFDGHVYEATFGDLQQVVLPSAHAQHMGQVG 453          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A024TSG4_9STRA (J domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSG4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.440e-9
Identity = 73/282 (25.89%), Postives = 103/282 (36.52%), Query Frame = 2
Query:  914 RGAMVFELPVLLSSLFTS--WALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQEAESGGMVILSARYGAE--LPRDCGREWWANAVPHSSGASAAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSG 1747
            RG + F +PV+++ L T+  W        P L  A VG ++    +R+ +  R          L +A   A +Q  LM   A K     A  GG+ +L ARYG       DC    + +                                               NVDVT+P+QFF+Q+  L LP  SK+ LLGF+ P                                G +       PA+  LY+RY F G  +E TF D Q+V LPS  + + G  G
Sbjct:  371 RGNVRFVVPVVVAPLSTANAWNTLVAATAPFLVAAVVGQVVKPARKRKEQAARQSAHARRVSYLMEARRCALSQQTLMGKQAAK---NTALDGGVNVLVARYGQNPSTAHDCDESSFEHV----------------------------------------------NVDVTIPVQFFLQNGRLYLPSTSKAGLLGFYNPML------------------------------GLYDPADASHPAQPHLYIRYAFDGHVYEATFGDLQQVVLPSAHAQHMGQVG 573          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A1V9Y9C0_9STRA (J domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9C0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.420e-8
Identity = 79/271 (29.15%), Postives = 108/271 (39.85%), Query Frame = 2
Query:  914 RGAMVFELPVLLSSLFTS--WALTCGGVLPALADAGVGWLMSSVWQRRAERQRVEEEPASRRRLAKAWADAANQTRLMAHMADKKRKQEAESGGMVILSARYGAELPRDCGREWWANAVPHSSGASAAAAPGNDGGSGGAVPLSAVVASEGPEAAAAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKA-QLYVRYEFAGRTFEETFDDDQEVFLPS 1717
            RG + F +P+ ++ L  +  W       LP +  A V  ++    +R+ +RQ   +       L +A   A  Q +LM   A+K    E  + G+ IL ARYG                 H S A        DG           +AS           +   N+DVT+PL+FF+QD  L L   SK+ LLGF+ P                                   G   P APA+A QLYVRY   GR +E TF+D QEV LPS
Sbjct:  371 RGNVRFAVPIAIAPLSAANAWNTFFAATLPFVVSALVRQVLRPAQKRKQQRQLQSDHARRVSYLMEARRCALAQQKLMERTANKPGDAEV-ADGITILVARYGK----------------HPSTA-------QDG-----------LASS----------IEDLNIDVTIPLRFFLQDGRLHLQATSKAGLLGFYNPCV---------------------------------GLYDPDAPAEAPQLYVRYAQNGRVYEATFEDAQEVVLPS 563          
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Match: A0A2D4CHI6_PYTIN (J domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHI6_PYTIN)

HSP 1 Score: 66.6 bits (161), Expect = 1.960e-7
Identity = 52/129 (40.31%), Postives = 58/129 (44.96%), Query Frame = 2
Query: 1403 VDVTVPLQFFVQDSTLTLPPE-SKSHLLGFFTPAACRPPSSWVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAP----AKAQLYVRYEFAGRTFEETFDDDQEVFLPSPSSTYQGDSGVR*GEGRVH 1774
            +DVTVPLQF VQDSTLTLP   SK+ LLGF+ P      S                              D  P P    A+ QLYVRY + G  FE TFDD Q V LPS  +   G        GRVH
Sbjct:  569 LDVTVPLQFLVQDSTLTLPAATSKASLLGFYNPCVVMTESE----------------------------TDAEPQPDESAARPQLYVRYAYDGVVFEATFDDLQAVQLPSRYAMAMG------AVGRVH 663          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1063.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L2F9_9PHAE8.110e-9863.73DUF3395 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G304_ECTSI9.830e-9664.63Heat shock protein 40 like protein/ DnaJ domain co... [more]
K3W6H1_GLOUD2.780e-1732.65J domain-containing protein n=1 Tax=Globisporangiu... [more]
A0A8K1FHR5_PYTOL1.570e-1432.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XK84_9STRA7.760e-1432.75J domain-containing protein n=1 Tax=Pythium brassi... [more]
A0A662Y3Z1_9STRA2.710e-1028.89J domain-containing protein n=2 Tax=Nothophytophth... [more]
A0A024TUS9_9STRA6.200e-925.89DUF3395 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024TSG4_9STRA8.440e-925.89J domain-containing protein n=2 Tax=Aphanomyces in... [more]
A0A1V9Y9C0_9STRA4.420e-829.15J domain-containing protein n=1 Tax=Achlya hypogyn... [more]
A0A2D4CHI6_PYTIN1.960e-740.31J domain-containing protein n=2 Tax=Pythium insidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1063contigH-canaliculatus_F_contig1063:24594..29994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.0
Seed ortholog evalue2.7e-85
Seed eggNOG ortholog2880.D7G304
KEGG koko:K09531
EggNOG free text desc.response to very low light intensity stimulus
EggNOG OGsCOG0484@1,KOG0718@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-09_004200.1
Exons5
Model size3043
Cds size834
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928720.1334589-UTR-H-canaliculatus_F_contig1063:24593..258801622928720.1334589-UTR-H-canaliculatus_F_contig1063:24593..25880Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1063 24594..25880 -
1696845538.3228745-UTR-H-canaliculatus_F_contig1063:24593..258801696845538.3228745-UTR-H-canaliculatus_F_contig1063:24593..25880Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1063 24594..25880 -
1622928720.2441983-UTR-H-canaliculatus_F_contig1063:29072..299941622928720.2441983-UTR-H-canaliculatus_F_contig1063:29072..29994Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1063 29073..29994 -
1696845538.3947504-UTR-H-canaliculatus_F_contig1063:29072..299941696845538.3947504-UTR-H-canaliculatus_F_contig1063:29072..29994Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1063 29073..29994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928720.1528225-CDS-H-canaliculatus_F_contig1063:25880..259951622928720.1528225-CDS-H-canaliculatus_F_contig1063:25880..25995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 25881..25995 -
1696845538.3368669-CDS-H-canaliculatus_F_contig1063:25880..259951696845538.3368669-CDS-H-canaliculatus_F_contig1063:25880..25995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 25881..25995 -
1622928720.171512-CDS-H-canaliculatus_F_contig1063:26197..264001622928720.171512-CDS-H-canaliculatus_F_contig1063:26197..26400Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 26198..26400 -
1696845538.3469107-CDS-H-canaliculatus_F_contig1063:26197..264001696845538.3469107-CDS-H-canaliculatus_F_contig1063:26197..26400Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 26198..26400 -
1622928720.1956916-CDS-H-canaliculatus_F_contig1063:26867..271181622928720.1956916-CDS-H-canaliculatus_F_contig1063:26867..27118Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 26868..27118 -
1696845538.3598914-CDS-H-canaliculatus_F_contig1063:26867..271181696845538.3598914-CDS-H-canaliculatus_F_contig1063:26867..27118Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 26868..27118 -
1622928720.2143364-CDS-H-canaliculatus_F_contig1063:27941..280691622928720.2143364-CDS-H-canaliculatus_F_contig1063:27941..28069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 27942..28069 -
1696845538.3703969-CDS-H-canaliculatus_F_contig1063:27941..280691696845538.3703969-CDS-H-canaliculatus_F_contig1063:27941..28069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 27942..28069 -
1622928720.2260609-CDS-H-canaliculatus_F_contig1063:28935..290721622928720.2260609-CDS-H-canaliculatus_F_contig1063:28935..29072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 28936..29072 -
1696845538.3819134-CDS-H-canaliculatus_F_contig1063:28935..290721696845538.3819134-CDS-H-canaliculatus_F_contig1063:28935..29072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 28936..29072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1063.615.1prot_H-canaliculatus_F_contig1063.615.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1063 25881..29072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1063.615.1

>prot_H-canaliculatus_F_contig1063.615.1 ID=prot_H-canaliculatus_F_contig1063.615.1|Name=mRNA_H-canaliculatus_F_contig1063.615.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=278bp
MVFELPVLLSSLFTSWALTCGGVLPALADAGVGWLMSSVWQRRAERQRVE
EEPASRRRLAKAWADAANQTRLMAHMADKKRKQEAESGGMVILSARYGAE
LPRDCGREWWANAVPHSSGASAAAAPGNDGGSGGAVPLSAVVASEGPEAA
AAMELVSQPNVDVTVPLQFFVQDSTLTLPPESKSHLLGFFTPAACRPPSS
WVEGSAGFLGGGEGAPHRQARDDWGFWGDDRPPAPAKAQLYVRYEFAGRT
FEETFDDDQEVFLPSPSSTYQGDSGVR*
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mRNA from alignment at H-canaliculatus_F_contig1063:24594..29994-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1063.615.1 ID=mRNA_H-canaliculatus_F_contig1063.615.1|Name=mRNA_H-canaliculatus_F_contig1063.615.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5401bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1063:24594..29994- (Hapterophycus canaliculatus Oshoro5f female)
GTCCACAAGCAGCAGAAGAAAAAGGCGCAAATCAAGTTGCGGCTCTAGAA AAAGCCGTGCAACGCTCTCCGCGGACGCCAATGAGATTCGCCTTGTGCCG CTTGAGTTTCACCAGCGCAAGAGCGGATGTTCCGTTTCGCGAGGGAGACG GGAAAAAGAGCGCTGCAAAAATCCCGTGCACTTTGTTTTTGGAACATGGA CAAGCCACGAGTGTCGGAAGCTTTTGCGGTGGCGTCAGAACTGTCTCGAT TCTTCCCACTCGAAGCTCTGCGCCGTGGAGCCGAGGCTGTCGAGGACGAG CCGGTCGAAACAGCTATTCGGAACTTACCGCGGTGGCTCCATGACGGAAC AGGCAAATCAAGATGCGGCTAAAAGTAGCAGCGATGTAGCCCCCCGGCGT GTTGCCTACAAGTCGAAGCTCTCGGAAGCCGGGTTTCATTTTTGAGGACT TGTTGTCGGCAGACTGCGCAGGAGAACGTCGAAAGATTTGGCATCCCGAG AGCGGCACGATGTGTGAGCTTCTTGTCTTTACCTCCTTTTCGAGCCTGCC TCTTCGCAGAGGAAGTGCGAAGCTCTTCGCAAACAACCACCGGAAATTGT CCGCAGGCGGGCCGGCGAAGTGTTTCGGATGCAAATCGCTGCACATCTCG TAGCTTCAATGTGCAATGATTTGGGAGCGGGAACAAGAGAAAACGAACGG CCTGTACACGGTAGCTAGAAGCTAGAAGCGATCCGTACCCTCTCCCTCTC CCATGTCCCTTGTCTCTTGGGCCCTTGTCTACTGGTGTAGCGAAGACTTG TCCTGACGGCAGACAGGCGGCAATAGTGACGCGTCTCCGATCGGTGGAAT CACTTACAGAACCAACGCCGAACCAACGCGAAATCGATCCGAACCGAAAC AAGCAGCCTCCAGCGCGGAGCGATGGTCTTCGAGCTACCGGTCCTCCTTT CATCTCTCTTCACGAGCTGGGCGCTGACCTGCGGAGGGGTGCTTCCCGCG CTCGCGGACGCTGGGGTTGGGTGGCTGATGTCGTCCGTATGGCAGAGGAG GGCCGAGAGGTACGGAGGGAGAAATCTAGGTGTAGGCGCTTTCCCTTCGA TGAGGCAGAGCCGTCTGCGGAAAGAGAAGCGGCAAGTGGATTTAGATTGC GAAAGGGAGACAGGCCGTCCGAAAAGGGACGTCCGTAGATGGATGCTGCT GCTTTCCTTGCAGCGGAGACTTGGTGGGATGGATCGGGACGGCATTGTTG GAAAGGGTAGACGGCCGTTCAGGACCCTTCTCGCAGGATGCCTCGTCAAG GGTCGGACGAGCGGCAGCTTTCCGGAGATGGGCGTTTCGTTTCCTTGCTG TGGTATGCAGGAGAACGAAGCGGTAAGCAGTTTCCTTCAAATTGGTACTG TGTTTGGTTCCGAAAACAAGATTGTGCGGTGGTCCGCTTGTTTTTGCACG CGCGATTATTCGCTCGGCAGGCTCGGCGCAGCTACGCGAGCCTTGCGGTA CTTGGAACCACCAGGCTCGCCGCCACCACGTTACTCATCGGTAGATATTG TTGGCATCGTTTCGTTTGCCATCCGACAGCAGTTGCAGAGGGTGGTTCTC AAAAGCACGCCTGCGTTCATGACTGATAGTCACCTGATGAGGCATAGCTT TTACGCTGTCTCGGCAAAAACTGTTGTTTCGTCGCTAAACTTGTTTCTAA TCTTAGACCTCGTCACGGTAGAATATTTTTTGTTTGCACGTGATGGCCAG CACGCGTGTTGTCCGAGCAGGGACAGCGACAGGATTTCTAGCATGTGTGT GGTCTGTATCTCGACGGCCGGAACGTCTTCACCAACCCCACCGTCACCAA CGAAGATGTGTACTAGAACGCCTCCACCGTTACCCCCCCACCCCCCCAAC ATCAACACAATACACCAACATACAGGCAGAGAGTAGAGGAAGAGCCGGCG AGTCGGAGGCGGCTAGCGAAGGCCTGGGCAGACGCGGCGAACCAAACCCG CCTCATGGCGCACATGGCGGACAAGAAGCGGAAGCAAGAGGCAGAGAGCG GAGGTAGGTGCCGTGATTCGCGATTTACCTCGCTCTCGCGATCGCGAGTT GCTTCTGACCGCGTTGGTGTGGCCCGAGCGACGCACCGGACGGCAGACAG AGGCGAGAGGGCCCTCCTCGTCGTTGATGTCGTCTTCGCTTCCTGCCGCT TGCCACCGTTCGCTTCCGCCCGATGTCACGCGCTCATTTGGTTGGGTGCG TCGTGCCACGGGACGCTTGCCCGTGTGTCTCGACTGCGAGGGAAACACGG CTGCCTGTCTATCACCCGAGGGCGTACCAGGTGTTTTGTTTTCTGTGCAG CCTTGACCACGCGCTTTCCGTTTGCGTTGTGCTCCTCGCTTTTCCCCACT TAGTTGCCGCGTCCTGGGGTGATCGGTTGACCTGATTGTTGGTGCAGGCA ACTAGTGCTCGGCCGTCGGAGGGGACGCGCAGTGGCGATGAGGAGCCCTC TTGCCACTGCTTCTGATTTTGGAGGGTTGCTCGCTCACAGAGAAGCCCAC GCGAATGCGTACTCCTGCTGCCTTTGATGTAAACGTACTCGAGCCCGTTG AAACGAAAAGGTTCACCAAGGGGTCACTTAGCACTTAGCACTCAGTGCAT CGGGGTGAAATCACACCGAACAGATCGATCGAAGCCAAACCCAACCGAGC GGAGTCGAAGCGACCTGACCCGACCCGAACCGAAATACTCGACCGGGCCC GAATCGGGCCGCATGGGCCCGAACCGGTACGACTCAGACCGTGCCGAAGT GATCCAAGCCGAAGTGATCCAAGCCGACCCGACCCGACCCGGCTCGCACA AATCCGCATGGAACCGGATCGAACAGGGATGGTAATCTTGTCGGCGAGGT ACGGCGCGGAGCTGCCCCGAGACTGCGGGCGGGAGTGGTGGGCCAACGCC GTGCCTCACTCGTCAGGAGCTTCGGCGGCGGCAGCACCAGGGAACGACGG GGGCTCCGGCGGCGCGGTGCCCCTGAGCGCCGTGGTGGCCTCGGAAGGGC CGGAAGCGGCGGCGGCGATGGAGCTCGTCTCTCAGCCGAACGTCGACGTC ACGGTGCCGCTGCAGTTTTTCGTCCAGGTGTGAGCGGCGCGATCCGGCCG ACGCCCTCTCTGGTGCCTCGTGCAACCCGCCTTCGTTCGCGCCTGCCCTT GCCCGCCGGACGAGGCTTCGTGGCCCACACGTGCCCGAAAACGCACCATC TTTGGCCGACTCTCTGCTGCTTTGTTTTGATCACCGGGAATCTAAGCTTC GCCTCGGGGACAAAGTCTGGGCCTTCCTCCCCCTGCTCTTTTTGTCCCCG TTCCCCCGACGATGCAGCTTTCCGATATCTTCCGGTGCACACCCCCCGGA GTTTCCCCACCCTGTACGTGGCTCGTTCATCGGTGCTCTTACCCGTCACA ACAAAAAGAGCACGGGTGGAAGCCCGCCCGTCATGTACCTTCCGGCGTCG ACACATGCCCCGATCCGCTTTCTGGAAACGCCTCTGATTACTAACGGCGA CCGCCCATCCGGATGCCGACGGCGTTATTGAATCTAAATGCCAGGACTCA ACGCTGACCCTGCCTCCGGAGAGCAAGTCTCACCTACTGGGCTTCTTCAC CCCTGCCGCCTGCCGACCACCATCATCTTGGGTGGAGGGTTCTGCGGGAT TTCTCGGGGGTGGGGAGGGGGCCCCGCACCGCCAAGCGCGAGATGACTGG GGGTTCTGGGGGGACGACAGACCTCCCGCCCCCGCCAAGGCGCAGCTGTG AGTTCTTTTTCCGTCGCGTGGATTTGTCGCCCATGGTGTTTTGGGGCCTC GGCAATTTGTCCGCTGACTTTGTGGGTGGTTGTTGTTGTGGCTGCTGCCG CGGCTGCCGGCACTACCGCTGTTGACGAGGAAGCCGGACTGGTTGTGACC GGTTGCTGCATCCCCCGATGTTGGCTGCGCGGACTGCTCTTGTCGCCAGG TACGTGCGATACGAGTTCGCCGGACGGACCTTCGAGGAGACCTTCGACGA CGACCAGGAGGTCTTCCTCCCATCGCCGAGCTCCACCTACCAGGGGGACT CAGGGGTTCGATGAGGGGAAGGCAGAGTGCACCAGCCAGCGGACCACCAG CACGCGACATCCGTGGGACCGCGAGCAGACCAAGCCTGTGCAGCGAACAT TTTGTAGCGAATGCTATTTCATTTCCCTGTGATGAATGAGCACAAGTGTT TTTGCCACGGAGGCGACCTCTCTTGTCCCTGCGAGACGCGTATTAAGACG CGCCTTAGGGGCAGGCGCGCGCGACGTGTGATGTAGATGTCTCGTTCGTT AGGGTCGGGGGTGGAATGCTCTCGTTGTCAGCGCCGAGAGCTGAGAGATG GCGGTCGCGACAGGAAAATGTGTCGAGAGTACCGTCGTCCTCACCTACGG CTCGAAGCTGGGAGGGGCGGAGTCGAGCACGAAACAAGGGACGGGCAGGA ATCTCGCCGGACCAGCGGCTCTTAACGACGAGGACGCTACGATCGCTGTG GCGGGATGCTTTCGTTCTGCTGAAATGCAAGTTGCTCACTTGCTATGTGC AGCCTTGATCAAAGCTACGCCCAATAGGGGTATACAGGAGAGCGAACACC GCCACGGTCTTGAGGGCTGCACCGTTGCAGTGCTGGCCTGGCAAAAGGAG GAATCGAAGAAGCTTGTGATCCACGAGCCGTACCTGGCAACGACGGCGGT CTTGAAACAGAAGACGGCTTTGACCGGGGATTTGTCGTCTTCTGAGATGA TCTGTACAGGCGCAGGAGGAGCAGGTGTCGAAATACATCTACTTCGTATT GTTTTTCGTTTATGGTCGAGATTACAAGATCATGCCTCCTTCCGGGGCAC ACGTGAATCTTCCACGAAGATGGTGCGTAGTCTTGGTTCTCCACGGCGAG CTTTTGTAACCCAAGGGCGGGGCAGGATTAAAGCTTCGGTCTTGCCCATG TCGACAAGTCTGCGGTGAGGCGCTAGGTATACTCCAGGTTCAGGTTGGTT TGTTTCGTATGGTGCAGTGCAGTTGCTGGGAGCCGTGCGTGATGCTCCCC GGAGAGATGAAAAAACAGGTACCATCACCTTGCATGTTCGCCAACTCGGC ATGTACCGCCCGAAGTTTCGGTCGTCGTCGTCGCTTGGGTCGACATACCC GATTTGTTTCTGCGTGTAGATGCCATCGATCTGCTGATACTTCCGAGGCT GCTGTCCTCCTGTCGAGCGTGGTACGTCCACGGGGTTGCCTTGTTCTTGT CCGGGTTGCTAATTGTGTGGCATCGGGGGAATGGCAAATTTTTTACCAGG AATTGGTTCAGCAGCCGAGAGGAGCCTGCTCGGTTTTTTGTCAGCCGAGG A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1063:24594..29994-

>mRNA_H-canaliculatus_F_contig1063.615.1 ID=mRNA_H-canaliculatus_F_contig1063.615.1|Name=mRNA_H-canaliculatus_F_contig1063.615.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1063:24594..29994- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCTTCGAGCTACCGGTCCTCCTTTCATCTCTCTTCACGAGCTGGGC
GCTGACCTGCGGAGGGGTGCTTCCCGCGCTCGCGGACGCTGGGGTTGGGT
GGCTGATGTCGTCCGTATGGCAGAGGAGGGCCGAGAGATGGTCTTCGAGC
TACCGGTCCTCCTTTCATCTCTCTTCACGAGCTGGGCGCTGACCTGCGGA
GGGGTGCTTCCCGCGCTCGCGGACGCTGGGGTTGGGTGGCTGATGTCGTC
CGTATGGCAGAGGAGGGCCGAGAGGCAGAGAGTAGAGGAAGAGCCGGCGA
GTCGGAGGCGGCTAGCGAAGGCCTGGGCAGACGCGGCGAACCAAACCCGC
CTCATGGCGCACATGGCGGACAAGAAGCGGAAGCAAGAGGCAGAGAGCGG
AGGCAGAGAGTAGAGGAAGAGCCGGCGAGTCGGAGGCGGCTAGCGAAGGC
CTGGGCAGACGCGGCGAACCAAACCCGCCTCATGGCGCACATGGCGGACA
AGAAGCGGAAGCAAGAGGCAGAGAGCGGAGGGATGGTAATCTTGTCGGCG
AGGTACGGCGCGGAGCTGCCCCGAGACTGCGGGCGGGAGTGGTGGGCCAA
CGCCGTGCCTCACTCGTCAGGAGCTTCGGCGGCGGCAGCACCAGGGAACG
ACGGGGGCTCCGGCGGCGCGGTGCCCCTGAGCGCCGTGGTGGCCTCGGAA
GGGCCGGAAGCGGCGGCGGCGATGGAGCTCGTCTCTCAGCCGAACGTCGA
CGTCACGGTGCCGCTGCAGTTTTTCGTCCAGGGATGGTAATCTTGTCGGC
GAGGTACGGCGCGGAGCTGCCCCGAGACTGCGGGCGGGAGTGGTGGGCCA
ACGCCGTGCCTCACTCGTCAGGAGCTTCGGCGGCGGCAGCACCAGGGAAC
GACGGGGGCTCCGGCGGCGCGGTGCCCCTGAGCGCCGTGGTGGCCTCGGA
AGGGCCGGAAGCGGCGGCGGCGATGGAGCTCGTCTCTCAGCCGAACGTCG
ACGTCACGGTGCCGCTGCAGTTTTTCGTCCAGGACTCAACGCTGACCCTG
CCTCCGGAGAGCAAGTCTCACCTACTGGGCTTCTTCACCCCTGCCGCCTG
CCGACCACCATCATCTTGGGTGGAGGGTTCTGCGGGATTTCTCGGGGGTG
GGGAGGGGGCCCCGCACCGCCAAGCGCGAGATGACTGGGGGTTCTGGGGG
GACGACAGACCTCCCGCCCCCGCCAAGGCGCAGCTGACTCAACGCTGACC
CTGCCTCCGGAGAGCAAGTCTCACCTACTGGGCTTCTTCACCCCTGCCGC
CTGCCGACCACCATCATCTTGGGTGGAGGGTTCTGCGGGATTTCTCGGGG
GTGGGGAGGGGGCCCCGCACCGCCAAGCGCGAGATGACTGGGGGTTCTGG
GGGGACGACAGACCTCCCGCCCCCGCCAAGGCGCAGCTGTACGTGCGATA
CGAGTTCGCCGGACGGACCTTCGAGGAGACCTTCGACGACGACCAGGAGG
TCTTCCTCCCATCGCCGAGCTCCACCTACCAGGGGGACTCAGGGGTTCGA
TGAGTACGTGCGATACGAGTTCGCCGGACGGACCTTCGAGGAGACCTTCG
ACGACGACCAGGAGGTCTTCCTCCCATCGCCGAGCTCCACCTACCAGGGG
GACTCAGGGGTTCGATGA
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