mRNA_H-canaliculatus_F_contig106.577.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig106.577.1
Unique NamemRNA_H-canaliculatus_F_contig106.577.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig106.577.1 vs. uniprot
Match: D7FMC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMC0_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.840e-86
Identity = 151/271 (55.72%), Postives = 197/271 (72.69%), Query Frame = 2 
Query:  764 EKNCGLTTRRWHQIIAVGVGLLEVAFSVYNALAEDSFKMLDPTDFVFSASAAMESVGLAVTLFAALCREISREEGQGGRGPVLETLGSPLAILVNGVRQKERSLAKVGHFGAMCQTAVVSVVGMVLLQRIDKRIFVILFYVIFLLLAGFCLAAHSRCCENWIKDVLIVSRSDSTLEPEDAAAGIMYALVMLPLGVEVAEVVLLVFGGGSWNATILALLDFAVASALLFPHGYKHFMRSCPEAAQRLTRDSWPNCP-FPVFCHVDNLVRIFF 1573
            EK+CGLT+RRWHQ+ A+G+GLLE AFS+ NA+AED+FK+ D   FVFSASA  ESVGLAV L  +LCR        G +  V+E  GSPLAILVNGVRQ +RSL K GHFGAMCQ AVV+V G+VLLQ++D R FVILFY + +L  GFCL  ++  C  + +++++VSR DS L+P++ A G+ YAL+ LPLGV+VAE++ L  GG SWNATILALLD  V + ++FP GYK FM + PEAA+RL  DS   C  +   C+++ L+ + F
Sbjct:   87 EKSCGLTSRRWHQLFALGIGLLEAAFSLNNAIAEDAFKIEDAASFVFSASAVQESVGLAVMLLLSLCRA-----RVGEQDAVMEEFGSPLAILVNGVRQTDRSLTKTGHFGAMCQAAVVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLVTNTVFCAGYFRNLVVVSRLDSALDPDNPAVGLTYALIALPLGVDVAEILFLFLGGQSWNATILALLDVGVTAMVVFPFGYKRFMTAFPEAARRLGLDSGRACDHYYCCCNLETLLYVVF 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig106.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMC0_ECTSI1.840e-8655.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig106contigH-canaliculatus_F_contig106:4163..7083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003540.1
Exons1
Model size2921
Cds size1242
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig106.577.1prot_H-canaliculatus_F_contig106.577.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig106 4500..5741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.0583696-UTR-H-canaliculatus_F_contig106:4162..44991622928714.0583696-UTR-H-canaliculatus_F_contig106:4162..4499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig106 4163..4499 +
1696845535.4086978-UTR-H-canaliculatus_F_contig106:4162..44991696845535.4086978-UTR-H-canaliculatus_F_contig106:4162..4499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig106 4163..4499 +
1622928714.1011512-UTR-H-canaliculatus_F_contig106:5741..70831622928714.1011512-UTR-H-canaliculatus_F_contig106:5741..7083Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig106 5742..7083 +
1696845535.4381833-UTR-H-canaliculatus_F_contig106:5741..70831696845535.4381833-UTR-H-canaliculatus_F_contig106:5741..7083Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig106 5742..7083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.084049-CDS-H-canaliculatus_F_contig106:4499..57411622928714.084049-CDS-H-canaliculatus_F_contig106:4499..5741Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 4500..5741 +
1696845535.4222045-CDS-H-canaliculatus_F_contig106:4499..57411696845535.4222045-CDS-H-canaliculatus_F_contig106:4499..5741Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 4500..5741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig106.577.1

>prot_H-canaliculatus_F_contig106.577.1 ID=prot_H-canaliculatus_F_contig106.577.1|Name=mRNA_H-canaliculatus_F_contig106.577.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=414bp
MPCAELATEFQARSVIPSSTLAAREPGASDQHRDGSHSWNWTRTGAAHVA
EVPDLEGGARGAPPIQTEVIVGHRSAVGPIAAVADEPVERGSHRDDSHPD
RGVPFIVEVQDLEGGASTPPIEIEAPGGRRAITATTLETTAAEKNCGLTT
RRWHQIIAVGVGLLEVAFSVYNALAEDSFKMLDPTDFVFSASAAMESVGL
AVTLFAALCREISREEGQGGRGPVLETLGSPLAILVNGVRQKERSLAKVG
HFGAMCQTAVVSVVGMVLLQRIDKRIFVILFYVIFLLLAGFCLAAHSRCC
ENWIKDVLIVSRSDSTLEPEDAAAGIMYALVMLPLGVEVAEVVLLVFGGG
SWNATILALLDFAVASALLFPHGYKHFMRSCPEAAQRLTRDSWPNCPFPV
FCHVDNLVRIFFP*
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mRNA from alignment at H-canaliculatus_F_contig106:4163..7083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig106.577.1 ID=mRNA_H-canaliculatus_F_contig106.577.1|Name=mRNA_H-canaliculatus_F_contig106.577.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2921bp|location=Sequence derived from alignment at H-canaliculatus_F_contig106:4163..7083+ (Hapterophycus canaliculatus Oshoro5f female)
ATTCCTTGTTGCTTATCTCGCCTGGAGGCTTACAGCAGAAGAACAGGGGA
AAAACATCGTCGCCACTGGACGGACATTTCGTACCATATCATTCGAGTTG
CCGTGAATGCACACATGCGTGTTCCGGACGGTGCGGGGAGCGGGGATCTG
AGATCTGAGGATCTAATGGGTGTTTATGTTCCGGTTCACGACCTGTTCGG
GTCTCTCCGCAACCGCAACGGGAACTGGGCAACTGACCGCGGCTACAGTA
GTAAATGTAGAACCAATTTTTTCGTGCCCGTCATCTCCCCGGTGCTGCTG
CAACACCGCTTCCCCACGGATCCACACATCATGAACGATGCCTTGTGCAG
AGTTGGCGACCGAATTTCAAGCCCGTTCTGTGATACCTTCAAGCACGTTA
GCCGCGAGGGAACCGGGAGCAAGCGACCAGCATAGAGATGGCAGTCACTC
CTGGAACTGGACCAGAACAGGTGCTGCTCACGTGGCAGAAGTTCCAGACC
TTGAGGGAGGAGCAAGAGGAGCACCGCCCATTCAAACGGAGGTAATTGTT
GGGCACCGGTCAGCAGTAGGTCCGATTGCAGCAGTCGCCGATGAGCCGGT
AGAACGTGGCAGCCACAGGGATGACAGCCACCCCGACCGAGGCGTTCCTT
TCATTGTTGAAGTTCAAGACCTGGAGGGAGGAGCTTCAACACCTCCCATC
GAGATAGAGGCACCTGGAGGGCGGCGGGCAATAACAGCCACGACACTTGA
AACTACAGCTGCTGAAAAGAACTGTGGCCTGACAACGCGTCGCTGGCACC
AAATCATTGCGGTTGGTGTCGGCCTGCTAGAGGTAGCTTTCAGCGTCTAC
AACGCGTTGGCGGAGGACTCCTTCAAGATGTTGGACCCCACCGACTTCGT
ATTTTCTGCATCGGCTGCGATGGAGTCTGTTGGCTTGGCTGTCACGCTTT
TTGCCGCGCTGTGTAGAGAAATTAGCAGGGAGGAAGGACAGGGTGGGCGC
GGCCCTGTGCTTGAAACGCTCGGGTCACCGCTCGCGATTCTGGTCAACGG
CGTGCGCCAGAAGGAGCGATCGCTGGCAAAGGTCGGGCACTTCGGCGCAA
TGTGCCAGACGGCGGTCGTGAGCGTCGTAGGCATGGTGCTGCTGCAGAGG
ATTGACAAAAGGATCTTCGTGATCCTCTTCTACGTTATTTTTTTGTTGCT
TGCCGGGTTTTGCCTCGCTGCGCACAGCCGTTGCTGCGAGAATTGGATCA
AAGACGTGCTCATCGTCTCCAGGTCGGATTCCACTCTTGAACCGGAAGAC
GCCGCAGCAGGTATCATGTACGCCTTGGTGATGTTGCCCCTTGGGGTCGA
GGTCGCTGAGGTCGTGCTCTTGGTCTTTGGAGGGGGGTCTTGGAACGCGA
CAATTCTAGCGCTCTTGGATTTCGCGGTGGCGAGTGCTCTCCTATTTCCT
CACGGATACAAGCATTTCATGAGGAGTTGTCCAGAGGCAGCTCAACGTCT
AACAAGAGATTCATGGCCTAATTGCCCGTTTCCTGTTTTCTGCCATGTGG
ATAATCTGGTGCGTATTTTTTTCCCATGACGAGAAAGAAACGCATCCTTT
TTGTCTCAGTGTTTTTGCCGTTGTGGAGACGAAGAGACGAAGTAGATTTT
TGGTGTCTCTTCCTGAGAGCAAGTGCCCTAAGACGTTTTGTCATGGGCGT
GTGTGGTTCTTTCGATCCTCGAGAGGTTGTAATTAGAACGCTTTCCCTTT
TGAGCTCCTGCCATATTTGTTTGGGGCAAGGATCGTCTTTCACCCGTTTT
GCTTGTTCTTGGGGTGCAGTCAGAAAAGCTGCCAATCTTATTGAGTTTTT
AAGCGTCTTGCTGTGATTGGCGTTGCGGCACTACTAGAACGTAGTGGAGA
GTGATTGTCAATCCCGGAGCTGTATGAAGTTCAGCAAGGTTGGCGGCAGT
TGAGGTACTGCTTGTTTTGATGCCCTTTCTTAGATGTGTGTTTGCAGTAT
TGCCGTTCGATCACCAGGTCCCCTGGAAGTCCGTCGATAGTGCGGGTGTG
TGTTTGCCCGATAAACCCGCACTAATTATAATAGCGGGCACCTGCACGAT
AAGTGTTTGTGCCTGAATAGTGTGTAAAGGCGCATGACTGCGGGTATCAG
GAACCGTGAGAAGAGCGCCTTCTTGCGCGATCTTGTTTTCAGGTTGTAAG
TTGAATTTGAGCATGGTCACACCTGAAGCGAGTGCAGTGAAGGTGGAATA
GACGTGCTTCAAGGGATCCTTTGGGGCTAGGAGTTGCTTGCGGGGGAGCC
GGGCGCGGTATGTGACGACTGATGTTCGGAGGTGAACAAAGCGCTGTGAC
CAAAGCACATCCTGCAACATACCCTATACGTAACACACTCCGGTGAGAAC
GTATTGGAATTGAAAAAAATTCAACGATTGATCGTGTTATTCTGTTGGGG
CTGGGCTATCTTATGTATAGCCCGGGTGATAACGTGCAGGTCGCAGGCTC
CATGAATGGGGTGTGACCCATGAATGGGGTGTGATAAATCAGGGTATGTG
GTAAGAAATGTGTGGTAACGTGTGCTTGCAAAGAGTTACATCTGCCGCAC
ACATGCAGGTGTGTGGCAGCAAGAGGGGTAGAAGAAGGTTGCTCACGTTG
AAAGAACGATGTGATCGGTGGAGCCTGCACTTCTGCGGTCGAAGCAGCTG
TCGAAAGAGCTGAGGAAGCTTCGGCGGAATTCCGTTGTCCATGATATTAG
AGGTCTCCATATCGGGTGGTTGCCCACACACAAGGGTGTGCTGAGTGGGA
TCATAGGACAAATATAGATGCTGTAACACCCGGGTGATCATTTGTAGCGG
GGGAAATGCGGCGCCGCCTCAGGGTGTGTGTGGTACATCATGTAACCCCG
TTGTTAATTTGTCTTACTGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig106:4163..7083+

>mRNA_H-canaliculatus_F_contig106.577.1 ID=mRNA_H-canaliculatus_F_contig106.577.1|Name=mRNA_H-canaliculatus_F_contig106.577.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2484bp|location=Sequence derived from alignment at H-canaliculatus_F_contig106:4163..7083+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTGTGCAGAGTTGGCGACCGAATTTCAAGCCCGTTCTGTGATACC
TTCAAGCACGTTAGCCGCGAGGGAACCGGGAGCAAGCGACCAGCATAGAG
ATGGCAGTCACTCCTGGAACTGGACCAGAACAGGTGCTGCTCACGTGGCA
GAAGTTCCAGACCTTGAGGGAGGAGCAAGAGGAGCACCGCCCATTCAAAC
GGAGGTAATTGTTGGGCACCGGTCAGCAGTAGGTCCGATTGCAGCAGTCG
CCGATGAGCCGGTAGAACGTGGCAGCCACAGGGATGACAGCCACCCCGAC
CGAGGCGTTCCTTTCATTGTTGAAGTTCAAGACCTGGAGGGAGGAGCTTC
AACACCTCCCATCGAGATAGAGGCACCTGGAGGGCGGCGGGCAATAACAG
CCACGACACTTGAAACTACAGCTGCTGAAAAGAACTGTGGCCTGACAACG
CGTCGCTGGCACCAAATCATTGCGGTTGGTGTCGGCCTGCTAGAGGTAGC
TTTCAGCGTCTACAACGCGTTGGCGGAGGACTCCTTCAAGATGTTGGACC
CCACCGACTTCGTATTTTCTGCATCGGCTGCGATGGAGTCTGTTGGCTTG
GCTGTCACGCTTTTTGCCGCGCTGTGTAGAGAAATTAGCAGGGAGGAAGG
ACAGGGTGGGCGCGGCCCTGTGCTTGAAACGCTCGGGTCACCGCTCGCGA
TTCTGGTCAACGGCGTGCGCCAGAAGGAGCGATCGCTGGCAAAGGTCGGG
CACTTCGGCGCAATGTGCCAGACGGCGGTCGTGAGCGTCGTAGGCATGGT
GCTGCTGCAGAGGATTGACAAAAGGATCTTCGTGATCCTCTTCTACGTTA
TTTTTTTGTTGCTTGCCGGGTTTTGCCTCGCTGCGCACAGCCGTTGCTGC
GAGAATTGGATCAAAGACGTGCTCATCGTCTCCAGGTCGGATTCCACTCT
TGAACCGGAAGACGCCGCAGCAGGTATCATGTACGCCTTGGTGATGTTGC
CCCTTGGGGTCGAGGTCGCTGAGGTCGTGCTCTTGGTCTTTGGAGGGGGG
TCTTGGAACGCGACAATTCTAGCGCTCTTGGATTTCGCGGTGGCGAGTGC
TCTCCTATTTCCTCACGGATACAAGCATTTCATGAGGAGTTGTCCAGAGG
CAGCTCAACGTCTAACAAGAGATTCATGGCCTAATTGCCCGTTTCCTGTT
TTCTGCCATGTGGATAATCTGGTGCGTATTTTTTTCCCATGAATGCCTTG
TGCAGAGTTGGCGACCGAATTTCAAGCCCGTTCTGTGATACCTTCAAGCA
CGTTAGCCGCGAGGGAACCGGGAGCAAGCGACCAGCATAGAGATGGCAGT
CACTCCTGGAACTGGACCAGAACAGGTGCTGCTCACGTGGCAGAAGTTCC
AGACCTTGAGGGAGGAGCAAGAGGAGCACCGCCCATTCAAACGGAGGTAA
TTGTTGGGCACCGGTCAGCAGTAGGTCCGATTGCAGCAGTCGCCGATGAG
CCGGTAGAACGTGGCAGCCACAGGGATGACAGCCACCCCGACCGAGGCGT
TCCTTTCATTGTTGAAGTTCAAGACCTGGAGGGAGGAGCTTCAACACCTC
CCATCGAGATAGAGGCACCTGGAGGGCGGCGGGCAATAACAGCCACGACA
CTTGAAACTACAGCTGCTGAAAAGAACTGTGGCCTGACAACGCGTCGCTG
GCACCAAATCATTGCGGTTGGTGTCGGCCTGCTAGAGGTAGCTTTCAGCG
TCTACAACGCGTTGGCGGAGGACTCCTTCAAGATGTTGGACCCCACCGAC
TTCGTATTTTCTGCATCGGCTGCGATGGAGTCTGTTGGCTTGGCTGTCAC
GCTTTTTGCCGCGCTGTGTAGAGAAATTAGCAGGGAGGAAGGACAGGGTG
GGCGCGGCCCTGTGCTTGAAACGCTCGGGTCACCGCTCGCGATTCTGGTC
AACGGCGTGCGCCAGAAGGAGCGATCGCTGGCAAAGGTCGGGCACTTCGG
CGCAATGTGCCAGACGGCGGTCGTGAGCGTCGTAGGCATGGTGCTGCTGC
AGAGGATTGACAAAAGGATCTTCGTGATCCTCTTCTACGTTATTTTTTTG
TTGCTTGCCGGGTTTTGCCTCGCTGCGCACAGCCGTTGCTGCGAGAATTG
GATCAAAGACGTGCTCATCGTCTCCAGGTCGGATTCCACTCTTGAACCGG
AAGACGCCGCAGCAGGTATCATGTACGCCTTGGTGATGTTGCCCCTTGGG
GTCGAGGTCGCTGAGGTCGTGCTCTTGGTCTTTGGAGGGGGGTCTTGGAA
CGCGACAATTCTAGCGCTCTTGGATTTCGCGGTGGCGAGTGCTCTCCTAT
TTCCTCACGGATACAAGCATTTCATGAGGAGTTGTCCAGAGGCAGCTCAA
CGTCTAACAAGAGATTCATGGCCTAATTGCCCGTTTCCTGTTTTCTGCCA
TGTGGATAATCTGGTGCGTATTTTTTTCCCATGA
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