mRNA_H-canaliculatus_F_contig10580.564.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10580.564.1
Unique NamemRNA_H-canaliculatus_F_contig10580.564.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: D7FUK2_ECTSI (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK2_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 6.730e-64
Identity = 114/175 (65.14%), Postives = 134/175 (76.57%), Query Frame = 2 
Query:  179 QQQSPHAQRASCKPPPFVGFRGPSDRFVEDSHPQFEEVVRKCYSGFRVQGADTFDAKVHDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPWTATSTRPSEEERDRGEAGEEAXXXXXXXXXXGDILPSALRRIRVLNDQLKERSRRLL 703
            Q Q  H  R S KPP F+GFRGPSDRFVE+SHPQF+E+V KC++GF V+ A+ FDAKVH+EAR+AFDGLE+GGVFRADVTQPFGLGTKCA+TYVTRTL G+PGTTYKYLGLRMFSHPWT T+    E + D G                G  +PSALRR+ +LN++LKERS RLL
Sbjct:   40 QTQQHHPARISVKPPSFLGFRGPSDRFVEESHPQFQEIVSKCFAGFHVEAAEAFDAKVHEEARQAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLAGDPGTTYKYLGLRMFSHPWTTTA---KEADSDGGH---------------GSGVPSALRRVGLLNNKLKERSLRLL 196
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A1E7EVX5_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVX5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.130e-23
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 2 
Query:  251 DRFVEDSHP---QFEEVVRKCYSGFRVQGADTFDAKV-------HDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPWTATST 547
            D F++D  P    F E +   Y GF    A T  ++         D  + + + + +GG+FR DVTQPFGLGTKCA TYVTR LVG PGTTYKYLGLRMF+HPWT TST
Sbjct:   61 DNFLKDESPYRKSFREALTTSYEGFVFDDAATLMSQPTAINNVKEDVVQNSLESMSRGGIFRTDVTQPFGLGTKCAKTYVTRCLVGSPGTTYKYLGLRMFAHPWT-TST 168
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A448Z616_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z616_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.920e-21
Identity = 59/122 (48.36%), Postives = 71/122 (58.20%), Query Frame = 2 
Query:  245 PSDRFVEDSHP---QFEEVVRKCYSGFRVQGADTF-------DAKVHDE-ARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPWTATSTRPSEEERDRG 577
            P   F+ D  P    F E +   Y GF V  A          +  +H+E    + + +E  G+FR DVTQPFGLGTKCA TYVTR LVGE GTTYKYLGLRMF+HPWT  S   ++   DRG
Sbjct:   58 PRGSFLRDEAPYRDSFGEALSGPYEGFAVDDAKELSLPCEGDNTGIHEEIVLSSLETMEGEGIFRTDVTQPFGLGTKCAKTYVTRCLVGERGTTYKYLGLRMFAHPWTDGSEEAAD---DRG 176
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A7S3Q6H3_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6H3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.610e-20
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 2 
Query:  254 RFVEDSHPQFEEVVRKCYSGFRVQGADTFDAK-----------VHDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPW 532
            R +E     F   +   Y GF V      + K            H + ++A   ++Q G+FR DVTQPFGLGTKCA TYVTR L+GE GTTYKYLGLRMF+HPW
Sbjct:   89 RNIEPYKESFRTAIDTSYEGFAVDQPGGLEKKGRKKCESPSYFQHHDVQKALLKMDQHGLFRTDVTQPFGLGTKCAKTYVTRCLLGEEGTTYKYLGLRMFAHPW 192
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A7S4EG83_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG83_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.030e-19
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 2 
Query:  245 PSDRFVEDSHP---QFEEVVRKCYSGFRVQGA---DTFDAKVHDEA-------RRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPWTA 538
            P   F+ D  P    F+E +   Y GF    A   ++F +    +        + + + + +GG FR DVTQPFGLGTKCA TYVTR LVG  GTTYKYLGLRMF+HPWTA
Sbjct:   77 PKGYFLRDEPPYRDSFKEALLGPYEGFAADDAAALNSFSSPTEGDGGIKERTIQSSLESMMRGGHFRTDVTQPFGLGTKCAKTYVTRCLVGAKGTTYKYLGLRMFAHPWTA 187
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A7S1VUV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUV2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.710e-19
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 2 
Query:  293 VRKCYSGFRVQGA-DTFDA-KVHDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPW 532
            +   Y GF V    D F + + H     A + +++ G FR DVTQP G GTKCA TYVTR L+G+ GTTYKYLGLRMF+HPW
Sbjct:    3 LETAYRGFVVDSPNDLFSSERNHASVENALENMQRAGFFRTDVTQPKGFGTKCAKTYVTRCLLGDEGTTYKYLGLRMFAHPW 84
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A7S2XRF9_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRF9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.580e-19
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  353 HDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPWTATSTRPSEEERDRG 577
            H + R A   ++  G FR DVTQPFGLGTKCA TYVTR L+GE GTTYKYLGLRMF+HPW  ++ + S  ++  G
Sbjct:  125 HAKIRNALCSMQDAGFFRTDVTQPFGLGTKCAKTYVTRCLLGEAGTTYKYLGLRMFAHPWDGSAEKESINDKHSG 199
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A7R9U8A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8A5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.920e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2 
Query:  257 FVEDSHPQFEEVVRKCYSGFRVQGADTFDAKVHDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPW 532
            F+ +    FE+  +  Y  F V+ A      +H+  RRAF  L + G+FR DV Q    G   + T+V RTLVGEPG TYKYLGLR+F+HPW
Sbjct:   10 FLSEEDDGFEDARQGAYRDFVVESAAALPESLHEGYRRAFRQLRKDGLFRHDVVQAG--GKVLSKTFVRRTLVGEPGITYKYLGLRIFAHPW 99
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: B8BV54_THAPS (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV54_THAPS)

HSP 1 Score: 85.9 bits (211), Expect = 3.400e-15
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 2 
Query:  281 FEEVVRKCYSGFRVQGADTFDAKVHDEARRAFDGLEQGGVFRADVTQPFGLGTK-CALTYVTRTLVGEPGTTYKYLGLRMFSHPWT 535
            F+  ++  Y+GFR        + +H E   +FDG++ G +F  D  QP   G K    T VTRTLVG+PG+TYKYLGLR+FSHPWT
Sbjct:   89 FDSCLKTSYTGFRYDSPSALPSTLHGEFESSFDGMDAGDLFLYDTVQP---GKKRLTRTSVTRTLVGDPGSTYKYLGLRLFSHPWT 171
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Match: A0A813FB39_POLGL (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FB39_POLGL)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-15
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:  314 FRVQGADTFDAKVHDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYVTRTLVGEPGTTYKYLGLRMFSHPWTATSTRPS 556
            F  + AD      H+E RR   GL + G+F+ D+ QP G GT    T VTR L+GEPG TYKYLGLRMF+HPW    T  S
Sbjct:    6 FVREPADASSESFHEEFRRCLHGLYEQGIFQYDLIQPVGPGTPVVSTRVTRCLIGEPGITYKYLGLRMFAHPWKGEKTSES 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10580.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUK2_ECTSI6.730e-6465.14Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
A0A1E7EVX5_9STRA1.130e-2352.29Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A448Z616_9STRA4.920e-2148.36Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7S3Q6H3_9STRA7.610e-2048.08Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
A0A7S4EG83_9STRA1.030e-1947.75Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7S1VUV2_9STRA5.710e-1953.66Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2XRF9_9STRA7.580e-1958.67Alpha-ketoglutarate-dependent dioxygenase FTO (Fra... [more]
A0A7R9U8A5_9STRA8.920e-1645.65Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
B8BV54_THAPS3.400e-1547.67Alpha-ketoglutarate-dependent dioxygenase FTO (Fra... [more]
A0A813FB39_POLGL4.010e-1550.62Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10580contigH-canaliculatus_F_contig10580:636..3723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue1.4e-57
Seed eggNOG ortholog2880.D7FUK2
Preferred nameFTO
KEGG koko:K19469
GOsGO:0001659,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009451,GO:0009888,GO:0009987,GO:0010883,GO:0016070,GO:0016491,GO:0016604,GO:0016607,GO:0016705,GO:0016706,GO:0031974,GO:0031981,GO:0032451,GO:0032501,GO:0032502,GO:0032879,GO:0033554,GO:0034641,GO:0035510,GO:0035511,GO:0035513,GO:0035514,GO:0035515,GO:0035516,GO:0035552,GO:0035553,GO:0040008,GO:0040014,GO:0042127,GO:0042245,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043576,GO:0043734,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0045595,GO:0045598,GO:0046483,GO:0046872,GO:0046914,GO:0048513,GO:0048638,GO:0048731,GO:0048856,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051213,GO:0051239,GO:0051716,GO:0055114,GO:0060612,GO:0061448,GO:0065007,GO:0065008,GO:0070013,GO:0070344,GO:0070350,GO:0070988,GO:0070989,GO:0071704,GO:0080111,GO:0090304,GO:0090335,GO:0140097,GO:0140098,GO:1901360,GO:1905952,GO:1990931
EggNOG free text desc.RNA N6-methyladenosine dioxygenase activity
EggNOG OGs28IRR@1,2QR31@2759
EC1.14.11.53
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size844
Cds size834
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10580.564.1prot_H-canaliculatus_F_contig10580.564.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10580 646..3723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.4304495-UTR-H-canaliculatus_F_contig10580:635..6451622928712.4304495-UTR-H-canaliculatus_F_contig10580:635..645Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10580 636..645 +
1696845534.6250718-UTR-H-canaliculatus_F_contig10580:635..6451696845534.6250718-UTR-H-canaliculatus_F_contig10580:635..645Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10580 636..645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.4398868-CDS-H-canaliculatus_F_contig10580:645..9841622928712.4398868-CDS-H-canaliculatus_F_contig10580:645..984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10580 646..984 +
1696845534.6459136-CDS-H-canaliculatus_F_contig10580:645..9841696845534.6459136-CDS-H-canaliculatus_F_contig10580:645..984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10580 646..984 +
1622928712.5465422-CDS-H-canaliculatus_F_contig10580:2591..27551622928712.5465422-CDS-H-canaliculatus_F_contig10580:2591..2755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10580 2592..2755 +
1696845534.656048-CDS-H-canaliculatus_F_contig10580:2591..27551696845534.656048-CDS-H-canaliculatus_F_contig10580:2591..2755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10580 2592..2755 +
1622928712.558795-CDS-H-canaliculatus_F_contig10580:3392..37231622928712.558795-CDS-H-canaliculatus_F_contig10580:3392..3723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10580 3393..3723 +
1696845534.664656-CDS-H-canaliculatus_F_contig10580:3392..37231696845534.664656-CDS-H-canaliculatus_F_contig10580:3392..3723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10580 3393..3723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10580.564.1

>prot_H-canaliculatus_F_contig10580.564.1 ID=prot_H-canaliculatus_F_contig10580.564.1|Name=mRNA_H-canaliculatus_F_contig10580.564.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=278bp
MGKANRGRGRGGGAKRGRGVSTNTRGGRGGGRGSSQQLLRGLGGPANENK
QQNQPRQQQSPHAQRASCKPPPFVGFRGPSDRFVEDSHPQFEEVVRKCYS
GFRVQGADTFDAKVHDEARRAFDGLEQGGVFRADVTQPFGLGTKCALTYV
TRTLVGEPGTTYKYLGLRMFSHPWTATSTRPSEEERDRGEAGEEASGGGG
GGGGSGDILPSALRRIRVLNDQLKERSRRLLVESSSSSSPTPPNGDGGSG
LSDGRGGGSSGGGSAQKKRNRDKDQRRG
back to top

mRNA from alignment at H-canaliculatus_F_contig10580:636..3723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10580.564.1 ID=mRNA_H-canaliculatus_F_contig10580.564.1|Name=mRNA_H-canaliculatus_F_contig10580.564.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3088bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10580:636..3723+ (Hapterophycus canaliculatus Oshoro5f female)
CTTTAGCGTCATGGGGAAGGCGAACCGTGGGAGAGGGCGGGGCGGCGGGG
CGAAGCGGGGCCGCGGTGTGTCTACCAACACGAGGGGTGGGCGGGGCGGA
GGCAGAGGAAGCTCGCAACAGCTGCTGCGGGGCCTCGGTGGTCCGGCGAA
CGAAAACAAGCAGCAGAACCAGCCAAGGCAGCAGCAGTCTCCGCACGCAC
AGCGGGCCAGCTGCAAGCCCCCGCCCTTTGTGGGTTTCCGTGGGCCGTCG
GATCGCTTCGTGGAGGACTCGCACCCGCAGTTCGAGGAGGTGGTGCGCAA
GTGCTATTCCGGCTTTCGCGTGCAGGGGGCGGACACATTTGATGCGAAGG
TAATATGGGCTTCTACAGCAGTCACTGCTGGAGTTTTTCGATCGTTAGAC
GCTAGATAGCACCCCCTTTCGGGCCTTCAAGCCAGCCTCTCCAGCAGGTT
GACCTTTCGACAGCCTCCTTCTGAACGGGGGGAACGAGGGAGGAAGTGCG
CTGCACACTGGCCCAAAGATTGTCAACAACGATTTGGCCGGTGAAAACTC
TTGAGCATTCAGGGCTTACCAGAGCTCGGCCCCAATCCACGGCATCTCGT
GTCCCCAGTTTTTGAAATCGACGTTTCCTCAATCGAAGATCGTTCCTCAG
GGTATATAGGGGTTGACGGTTGAGGGGTGAGGTTCTCTCGTCACCGGCGA
CAGGTCGACGCACCAGCCCCAAAGAGTTGCCGCACGGCATCCAGGCAAGG
AGAAAGGACGATGCACAGGTTCGTCCCTCTCTCGCTCTCTCTATCTCTCC
GGGACTGTCTGTTCCTGGCGATCATCTGGGTGCGAGCGAACTGCCGTCGT
GTTTTGTGCTTTCCCTGCGCTGCTCGCGCGGGTTGTTGGGTGCACACGAG
CCCCAGTATCAAAACAGCCGCTTGTACCGTCGAGGACGCGCGCAACTATG
GGGTCGGGACCGCCGTACCGTAGCTTTATCACTCGCTCCTCGGAAAATAT
GTAGCACGGGTGTTCGCCTATCTGGAATAGTAAACCTCGCTCCCACCGCA
GCAGCAGTCAGTGGGCATGCATTCGATGAAAGCTTTCCTAGAGCATGAAC
ACATCAACCTCGGTGGCGTAAAACTCGACAAACCTACGTTGCGTGGGAGT
TTAACGCTGGCAGCGCACCATGTATTCGCGGGGGGGCTGAGCTGCGCCTA
CACAAGCGAGAGTCCCTCCGGAGTTCTCCGAGGAGGATCTACGTGTCCTC
CCGACCTTGTCTTGCTTTTTGTTTTCCGCACCCAGGATTGATTATCGTCA
ACTAGGTCAATAAAGCATAGCAGCGGCCAATCCGCCGTCAGCGGAAAGTC
CTCACCAACGGAGATGTACCCACGTGGGCGGCGGAAGGGGGAGGCGGGGG
GTGATCCGGGTCGTCCCCGGATGCGTCTTTTTCATGGTCCCTTTCATGAG
CGTTGTCGCTGATGTTGTTGGCCGTGTCGTTGCTGTGCTGCTTCGTTGAT
GCGAGTCAAGCTCGGTCGACGTCGGTTTCGAGCCGGCCCTCGGGCTACCA
TGCCTGTAGTTTCAGAGAACGATCCAACGTGAGAAATGGTGGACGCTAGG
AGATGTCTTCATGCCGTTCGCGAATTTACTGAATAACATGAACATGGACG
ACGAGGATTACACAAGAGCCACGGCAGCGCGATAAACTTATACAACGCTC
ACCAGCACCAACAACGTCGTCAACAATGAAGGCGACGAAGACAACGCACC
GAAGACGACGCAGAAAACGCAACACAACGCACAAAACACAAGTAAAACAG
CACAACGTGTAGCCCAGAACACAAAATACTCAAAACACGAGTCACTGCAC
ACAAGCACGCAACGCGGCAAAAACGAAAAGCGTAGGAAAAAAAACGCCAA
AATCGATAGAATCGAAAACCCGCCAAGGGTACACTGAACACCGACCGCCA
CAGCAGGTGCACGACGAAGCGCGCCGGGCTTTCGATGGCCTCGAGCAAGG
AGGCGTGTTCAGAGCGGACGTCACCCAGCCCTTCGGGCTGGGCACGAAGT
GCGCCTTGACGTACGTGACGAGGACGCTCGTTGGCGAGCCCGGCACCACG
TACAAGTACCTCGGATTACGGTGAGTGCCGCCACCGCCGCTCCTGGGTCG
AAATGATCGCACACCGCACACACCAATCGGTCTTGTCGTTCTGTAGTTGT
GTGTGTGTTTTTCTTTTTGGTCGTGCCTGTTGCCAGCCGCCCACGCGGCT
GGCCGAGGACATGTGTCGCACGCACGTTGTGGGGAGGGAGGGAGCGAGAG
ACGGAGGAGCGGGGGGGTGGCCTCTGTTGCACGTCTGTTTGTTTCCGACA
TGCGGCGAGGGCGCGTGATTGCGTTCGTGGTTGTGCAGTCTTGCGGTACA
AGGTAGGCAGAGACGGATCGAACGAGTCATCTCGGCGAAGAAACGGCAAC
TTTTGCATCTTTGTGTGTTATGGCTCGCCGAGTATGAATACTGCAAGACA
CTCTCCCCATCATGAACTCTTTGTGTGTTGCCTCGATTGCCGGTTGCGAT
ATAGATCGTGTTGACCCCCTCCCGCCCCGGCCCAATTTCTACCCCGTCCC
GTCCCGCGATCCTATCCCGCTACACCCCATCATGCCGTCCCGCCGCCATC
CCGCCTCACCCCATACCATCCCATCGCACCCCACATTCCGTCTCCATCTT
CCCTCGCCTCCTCATCGCATCTCGCCAAACCTCAACCACGCACGTGCTCG
CCTCCAGAATGTTCAGCCACCCGTGGACGGCGACAAGCACCAGGCCCAGC
GAGGAGGAGAGAGACCGAGGGGAGGCCGGCGAAGAGGCCTCGGGCGGCGG
CGGCGGCGGTGGCGGCAGTGGAGACATCCTGCCCTCTGCCCTGCGACGGA
TCCGCGTGCTCAACGACCAGCTCAAGGAGCGCTCGCGGCGCCTGCTCGTG
GAATCGTCGTCGTCCTCGTCTCCCACGCCGCCGAATGGCGATGGTGGGTC
TGGCTTATCCGACGGAAGGGGAGGCGGTAGCAGCGGCGGCGGCAGTGCCC
AGAAGAAGAGGAACCGAGACAAGGACCAAAGGAGAGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10580:636..3723+

>mRNA_H-canaliculatus_F_contig10580.564.1 ID=mRNA_H-canaliculatus_F_contig10580.564.1|Name=mRNA_H-canaliculatus_F_contig10580.564.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10580:636..3723+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGAAGGCGAACCGTGGGAGAGGGCGGGGCGGCGGGGCGAAGCGGGG
CCGCGGTGTGTCTACCAACACGAGGGGTGGGCGGGGCGGAGGCAGAGGAA
GCTCGCAACAGCTGCTGCGGGGCCTCGGTGGTCCGGCGAACGAAAACAAG
CAGCAGAACCAGCCAAGGCAGCAGCAGTCTCCGCACGCACAGCGGGCCAG
CTGCAAGCCCCCGCCCTTTGTGGGTTTCCGTGGGCCGTCGGATCGCTTCG
TGGAGGACTCGCACCCGCAGTTCGAGGAGGTGGTGCGCAAGTGCTATTCC
GGCTTTCGCGTGCAGGGGGCGGACACATTTGATGCGAAGATGGGGAAGGC
GAACCGTGGGAGAGGGCGGGGCGGCGGGGCGAAGCGGGGCCGCGGTGTGT
CTACCAACACGAGGGGTGGGCGGGGCGGAGGCAGAGGAAGCTCGCAACAG
CTGCTGCGGGGCCTCGGTGGTCCGGCGAACGAAAACAAGCAGCAGAACCA
GCCAAGGCAGCAGCAGTCTCCGCACGCACAGCGGGCCAGCTGCAAGCCCC
CGCCCTTTGTGGGTTTCCGTGGGCCGTCGGATCGCTTCGTGGAGGACTCG
CACCCGCAGTTCGAGGAGGTGGTGCGCAAGTGCTATTCCGGCTTTCGCGT
GCAGGGGGCGGACACATTTGATGCGAAGGTGCACGACGAAGCGCGCCGGG
CTTTCGATGGCCTCGAGCAAGGAGGCGTGTTCAGAGCGGACGTCACCCAG
CCCTTCGGGCTGGGCACGAAGTGCGCCTTGACGTACGTGACGAGGACGCT
CGTTGGCGAGCCCGGCACCACGTACAAGTACCTCGGATTACGGTGCACGA
CGAAGCGCGCCGGGCTTTCGATGGCCTCGAGCAAGGAGGCGTGTTCAGAG
CGGACGTCACCCAGCCCTTCGGGCTGGGCACGAAGTGCGCCTTGACGTAC
GTGACGAGGACGCTCGTTGGCGAGCCCGGCACCACGTACAAGTACCTCGG
ATTACGAATGTTCAGCCACCCGTGGACGGCGACAAGCACCAGGCCCAGCG
AGGAGGAGAGAGACCGAGGGGAGGCCGGCGAAGAGGCCTCGGGCGGCGGC
GGCGGCGGTGGCGGCAGTGGAGACATCCTGCCCTCTGCCCTGCGACGGAT
CCGCGTGCTCAACGACCAGCTCAAGGAGCGCTCGCGGCGCCTGCTCGTGG
AATCGTCGTCGTCCTCGTCTCCCACGCCGCCGAATGGCGATGGTGGGTCT
GGCTTATCCGACGGAAGGGGAGGCGGTAGCAGCGGCGGCGGCAGTGCCCA
GAAGAAGAGGAACCGAGACAAGGACCAAAGGAGAGGGAATGTTCAGCCAC
CCGTGGACGGCGACAAGCACCAGGCCCAGCGAGGAGGAGAGAGACCGAGG
GGAGGCCGGCGAAGAGGCCTCGGGCGGCGGCGGCGGCGGTGGCGGCAGTG
GAGACATCCTGCCCTCTGCCCTGCGACGGATCCGCGTGCTCAACGACCAG
CTCAAGGAGCGCTCGCGGCGCCTGCTCGTGGAATCGTCGTCGTCCTCGTC
TCCCACGCCGCCGAATGGCGATGGTGGGTCTGGCTTATCCGACGGAAGGG
GAGGCGGTAGCAGCGGCGGCGGCAGTGCCCAGAAGAAGAGGAACCGAGAC
AAGGACCAAAGGAGAGGG
back to top