mRNA_H-canaliculatus_F_contig10418.429.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10418.429.1
Unique NamemRNA_H-canaliculatus_F_contig10418.429.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10418.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10418contigH-canaliculatus_F_contig10418:2499..2935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928684.6361241-UTR-H-canaliculatus_F_contig10418:2498..25481622928684.6361241-UTR-H-canaliculatus_F_contig10418:2498..2548Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10418 2499..2548 +
1696845525.7464304-UTR-H-canaliculatus_F_contig10418:2498..25481696845525.7464304-UTR-H-canaliculatus_F_contig10418:2498..2548Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10418 2499..2548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928684.6471362-CDS-H-canaliculatus_F_contig10418:2548..29351622928684.6471362-CDS-H-canaliculatus_F_contig10418:2548..2935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10418 2549..2935 +
1696845525.7547169-CDS-H-canaliculatus_F_contig10418:2548..29351696845525.7547169-CDS-H-canaliculatus_F_contig10418:2548..2935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10418 2549..2935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10418.429.1prot_H-canaliculatus_F_contig10418.429.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10418 2549..2935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10418.429.1

>prot_H-canaliculatus_F_contig10418.429.1 ID=prot_H-canaliculatus_F_contig10418.429.1|Name=mRNA_H-canaliculatus_F_contig10418.429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MPGIRSPPTTMSAERRKQRRGNIGRSRQQQCEVGQGRRREKGEGWVSTLE
FHRIREIDRDGTRILLGTETWREPTERRQRMTKPTKLMKRNETKRNETEQ
RKRIIARSKTPKISCQSILEITLEPSTRA
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mRNA from alignment at H-canaliculatus_F_contig10418:2499..2935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10418.429.1 ID=mRNA_H-canaliculatus_F_contig10418.429.1|Name=mRNA_H-canaliculatus_F_contig10418.429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=437bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10418:2499..2935+ (Hapterophycus canaliculatus Oshoro5f female)
GGGTGCGTTTCAGCACGTGACTGCCTTGTACAAGGCCAGCAAATGGATGA
ATGCCAGGTATCCGATCGCCGCCGACCACAATGTCTGCAGAGCGTAGAAA
ACAACGCCGCGGCAATATCGGCAGGTCGCGACAGCAGCAGTGTGAGGTAG
GACAGGGTAGGAGGCGAGAAAAAGGGGAAGGTTGGGTATCAACTTTAGAA
TTTCACAGGATCCGCGAAATAGACAGGGACGGGACTAGGATACTGCTAGG
AACAGAAACATGGCGCGAACCGACTGAACGAAGACAACGCATGACAAAAC
CAACGAAACTAATGAAACGAAACGAAACGAAACGAAACGAAACGGAACAG
CGGAAACGAATCATCGCAAGAAGTAAAACACCAAAAATAAGCTGCCAGTC
AATCTTAGAAATTACACTTGAACCATCCACGCGCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10418:2499..2935+

>mRNA_H-canaliculatus_F_contig10418.429.1 ID=mRNA_H-canaliculatus_F_contig10418.429.1|Name=mRNA_H-canaliculatus_F_contig10418.429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10418:2499..2935+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAGGTATCCGATCGCCGCCGACCACAATGTCTGCAGAGCGTAGAAA
ACAACGCCGCGGCAATATCGGCAGGTCGCGACAGCAGCAGTGTGAGGTAG
GACAGGGTAGGAGGCGAGAAAAAGGGGAAGGTTGGGTATCAACTTTAGAA
TTTCACAGGATCCGCGAAATAGACAGGGACGGGACTAGGATACTGCTAGG
AACAGAAACATGGCGCGAACCGACTGAACGAAGACAACGCATGACAAAAC
CAACGAAACTAATGAAACGAAACGAAACGAAACGAAACGAAACGGAACAG
CGGAAACGAATCATCGCAAGAAGTAAAACACCAAAAATAAGCTGCCAGTC
AATCTTAGAAATTACACTTGAACCATCCACGCGCGCCATGCCAGGTATCC
GATCGCCGCCGACCACAATGTCTGCAGAGCGTAGAAAACAACGCCGCGGC
AATATCGGCAGGTCGCGACAGCAGCAGTGTGAGGTAGGACAGGGTAGGAG
GCGAGAAAAAGGGGAAGGTTGGGTATCAACTTTAGAATTTCACAGGATCC
GCGAAATAGACAGGGACGGGACTAGGATACTGCTAGGAACAGAAACATGG
CGCGAACCGACTGAACGAAGACAACGCATGACAAAACCAACGAAACTAAT
GAAACGAAACGAAACGAAACGAAACGAAACGGAACAGCGGAAACGAATCA
TCGCAAGAAGTAAAACACCAAAAATAAGCTGCCAGTCAATCTTAGAAATT
ACACTTGAACCATCCACGCGCGCC
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