mRNA_H-canaliculatus_F_contig10404.421.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10404.421.1
Unique NamemRNA_H-canaliculatus_F_contig10404.421.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10404.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10404contigH-canaliculatus_F_contig10404:1317..3481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size663
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10404.421.1prot_H-canaliculatus_F_contig10404.421.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10404 1317..3167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928683.7450588-CDS-H-canaliculatus_F_contig10404:1316..14381622928683.7450588-CDS-H-canaliculatus_F_contig10404:1316..1438Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10404 1317..1438 +
1696845525.2404268-CDS-H-canaliculatus_F_contig10404:1316..14381696845525.2404268-CDS-H-canaliculatus_F_contig10404:1316..1438Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10404 1317..1438 +
1622928683.7610235-CDS-H-canaliculatus_F_contig10404:2941..31671622928683.7610235-CDS-H-canaliculatus_F_contig10404:2941..3167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10404 2942..3167 +
1696845525.249555-CDS-H-canaliculatus_F_contig10404:2941..31671696845525.249555-CDS-H-canaliculatus_F_contig10404:2941..3167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10404 2942..3167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928683.7730255-UTR-H-canaliculatus_F_contig10404:3167..34811622928683.7730255-UTR-H-canaliculatus_F_contig10404:3167..3481Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10404 3168..3481 +
1696845525.2575572-UTR-H-canaliculatus_F_contig10404:3167..34811696845525.2575572-UTR-H-canaliculatus_F_contig10404:3167..3481Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10404 3168..3481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10404.421.1

>prot_H-canaliculatus_F_contig10404.421.1 ID=prot_H-canaliculatus_F_contig10404.421.1|Name=mRNA_H-canaliculatus_F_contig10404.421.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
VVCANFFKAVFLFKAVFEVSNNVIDAAKKTHGARVFSDVGRYIQQGTSLK
LQRETNSHELRLFTVLRQGAVRTMAGVRAILQSGSRVPSQFKEQYTITTR
DVGDGPREPPAFRGY*
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mRNA from alignment at H-canaliculatus_F_contig10404:1317..3481+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10404.421.1 ID=mRNA_H-canaliculatus_F_contig10404.421.1|Name=mRNA_H-canaliculatus_F_contig10404.421.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10404:1317..3481+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGTGTGCGAACTTCTTCAAGGCCGTCTTCCTCTTCAAGGCCGTCTT
CGAGGTGTCGAACAACGTCATAGACGCTGCAAAGAAGACACACGGAGCGA
GGGTGTTCTCCGACGTGGGCAGGTATGTCAATTCTCTTCTGGCGTGGATA
TGTCTTTTGGCTTCAGTAGGTGCAGTAAGGATGTTACCAACGGAAGCGCG
CATTTTTGCCACTAGATTCCCCTGTAGATGGACATGTATGAATGTATGTC
CTGTGTTTCCAATCCTACTGCTGTATGTCGCCCACAACCCAAACCCACCT
TTCTCCTTGGTGAAATGGTAGCCGGAGCCTTGGGTGCTTCAGCACCTGCA
AAGGTACGGCGTTTAATTGGGGATCTGGATCTCTATCTCCCGACCTTTTA
AAACCCCATGGCTAATTTCCGTTTTTTTTCTTTTGGTGCGGAGGGAAAAA
GTCGAGCGGGGGAAGGTATGCACGAGGAGGGAGCAGGAGGTCGACCGCCT
GATTGATGGAGGGGTGTGGCTCTCTAGAATTGCTATTTGGACGCGGCAAA
TAAACTCGGCAGGCGGGCCTGAGTGTTATGCTGCCCCCTGGGTGCCATAT
ATCTACACGTGGAGTAAGGAGACTTGGCTTCTGTCGCAACATTTCCCAAA
TGTAACAACAACTGCTGAGTGGGCGGCGTGAGCGCGCAAATTTCAAATTT
TCAAAGTTGCCCTCTTCGCTTCGTCCAGGGACAGACAATCGGGTACCGGG
TAGACTTCCGCGACGCGGCAAGCGCACAATGGCTTTCTCGCATTCGTGGA
TTGGTGTGTAGCTTGCTGTTTGGACAGCCAATACCCCTTAAGCCTTGTTT
TATTATGTAAACCTACACGAGAAAATGTCAGTTGTCCTTACTTCGCAATC
GCACCTGAACGAACGATCCTACAGCAGTATACTGCTTGTATGTAGGTGCA
TTTAGAGTCCAGGACTTTGTGCGGCGGGAAGGCGTCATCGCACACCATCG
CAGAAGCACGGATTATGCATGTATTCTTCTACATACTAAGGGTGTGGTGT
TTGTGGTACTCATATCTTCCCATTTCTAGAAAAGAAATGAGTCAAAAGCA
CCACACAGGAGGAATACTCGGACCCTGGGCGGAAACGAAATGATACCGAC
CCGGGGGGAATTTTGAAGGATGGACGAGAAATTTTATGCGTATAATGATG
GCGGGCGACGCATATATTGTATGAAGTATACCGCGCAATTTGATACTTCG
TGCGAGGAGGCGCCGAGTGAGCATTTATTGTCCCGGTCGTCGGTCCACTC
GTCTCTCAAGCTCAATTGTTTTGTTGTTGTAGTCTGACAGAAGCTAAAGT
TGGTAATCCGCTCTCACTCCCAATTAATTTCTTGTTTGCACTGCTTCGAA
GCATTTGCGCGGCTTCTTTATCCTGCAGCCTTCTATTCCTGTCTCTCTGC
ACCAACCGCTTTCGTCTTCTGCACGCCTCCAGAACCTTTGCAAGAATAGT
CCAGCTGGTGACAATGCGTAGATATAAATATGCCCTTCTCGCCGTTTGGA
TAGCGTAGTAGCAAGTGCTCTTCGAAGTAGCATCGTTCAATGCTCGTACC
TAACCCGAGGCTCGACCACTGCCAGGTACATACAGCAGGGAACTTCTCTG
AAACTTCAACGTGAAACAAATTCGCATGAACTCCGTCTCTTCACCGTGTT
GCGTCAAGGAGCTGTACGAACGATGGCGGGAGTACGAGCGATTCTTCAAT
CAGGCAGCCGGGTTCCTTCACAATTCAAGGAGCAGTACACCATCACAACA
CGCGACGTCGGGGACGGCCCTAGAGAGCCACCGGCGTTCCGCGGTTATTG
AAGCACAAGACACAGTAATTGCACCTCTTGTTGACGGAGCACGACAGAGC
TTTGCTGGTTTTTGTTTTGAAGTTTGTTAGGCAGCTTTGCGATTAGTTTC
GAGATGTGTTTGGATATATCAGAAGTCAGCTTAGCGGGAGGTACTTGTAA
AGATAGGCGAACGCCCGGACTAACACAGCCCAGGCTGCCGGGTTGTTGGA
TGAAGATGCGGGACCCTCACTGGTCCAGGTTGACGCTACGGGTACATGTA
TCGACTCGCAAACCTGGTCCAAATCGCATCTGCCCGTATAACTCCTTGCT
TTCGTGCCGGCGGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10404:1317..3481+

>mRNA_H-canaliculatus_F_contig10404.421.1 ID=mRNA_H-canaliculatus_F_contig10404.421.1|Name=mRNA_H-canaliculatus_F_contig10404.421.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10404:1317..3481+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGTGTGCGAACTTCTTCAAGGCCGTCTTCCTCTTCAAGGCCGTCTT
CGAGGTGTCGAACAACGTCATAGACGCTGCAAAGAAGACACACGGAGCGA
GGGTGTTCTCCGACGTGGGCAGGTGGTGTGTGCGAACTTCTTCAAGGCCG
TCTTCCTCTTCAAGGCCGTCTTCGAGGTGTCGAACAACGTCATAGACGCT
GCAAAGAAGACACACGGAGCGAGGGTGTTCTCCGACGTGGGCAGGTACAT
ACAGCAGGGAACTTCTCTGAAACTTCAACGTGAAACAAATTCGCATGAAC
TCCGTCTCTTCACCGTGTTGCGTCAAGGAGCTGTACGAACGATGGCGGGA
GTACGAGCGATTCTTCAATCAGGCAGCCGGGTTCCTTCACAATTCAAGGA
GCAGTACACCATCACAACACGCGACGTCGGGGACGGCCCTAGAGAGCCAC
CGGCGTTCCGCGGTTATTGAGTACATACAGCAGGGAACTTCTCTGAAACT
TCAACGTGAAACAAATTCGCATGAACTCCGTCTCTTCACCGTGTTGCGTC
AAGGAGCTGTACGAACGATGGCGGGAGTACGAGCGATTCTTCAATCAGGC
AGCCGGGTTCCTTCACAATTCAAGGAGCAGTACACCATCACAACACGCGA
CGTCGGGGACGGCCCTAGAGAGCCACCGGCGTTCCGCGGTTATTGA
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