mRNA_H-canaliculatus_F_contig10401.418.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10401.418.1
Unique NamemRNA_H-canaliculatus_F_contig10401.418.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10401.418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10401contigH-canaliculatus_F_contig10401:126..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size770
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10401.418.1prot_H-canaliculatus_F_contig10401.418.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10401 128..616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928683.4803638-UTR-H-canaliculatus_F_contig10401:125..1271622928683.4803638-UTR-H-canaliculatus_F_contig10401:125..127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10401 126..127 +
1696845525.143064-UTR-H-canaliculatus_F_contig10401:125..1271696845525.143064-UTR-H-canaliculatus_F_contig10401:125..127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10401 126..127 +
1622928683.5081706-UTR-H-canaliculatus_F_contig10401:616..8951622928683.5081706-UTR-H-canaliculatus_F_contig10401:616..895Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10401 617..895 +
1696845525.1700826-UTR-H-canaliculatus_F_contig10401:616..8951696845525.1700826-UTR-H-canaliculatus_F_contig10401:616..895Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10401 617..895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928683.4943175-CDS-H-canaliculatus_F_contig10401:127..6161622928683.4943175-CDS-H-canaliculatus_F_contig10401:127..616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10401 128..616 +
1696845525.1587174-CDS-H-canaliculatus_F_contig10401:127..6161696845525.1587174-CDS-H-canaliculatus_F_contig10401:127..616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10401 128..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10401.418.1

>prot_H-canaliculatus_F_contig10401.418.1 ID=prot_H-canaliculatus_F_contig10401.418.1|Name=mRNA_H-canaliculatus_F_contig10401.418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
MRNPRNPRCTCPMKSLPAIIWQCCEHIQHGALFCDVETRRRAQTTRPWGN
KAGSEDGQVVFRLCFPRLFAALIFSVDAGGGIVTWRCDFWWLAVPLYLPV
MTVVDEVEPTHVVLFSAVMKSDGKRLFFFGGNEAVDPKDGGNALTVMLDS
GRCPVVEGSTFP*
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mRNA from alignment at H-canaliculatus_F_contig10401:126..895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10401.418.1 ID=mRNA_H-canaliculatus_F_contig10401.418.1|Name=mRNA_H-canaliculatus_F_contig10401.418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=770bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10401:126..895+ (Hapterophycus canaliculatus Oshoro5f female)
ATATGCGAAACCCGCGAAATCCCCGCTGTACCTGTCCGATGAAATCTCTG
CCTGCGATAATCTGGCAATGCTGTGAGCATATCCAACACGGTGCACTATT
TTGTGACGTCGAAACGAGACGTCGCGCTCAGACAACAAGGCCGTGGGGAA
ACAAGGCAGGAAGCGAGGATGGCCAAGTTGTATTTCGCTTGTGTTTTCCA
AGGCTCTTTGCGGCATTGATTTTTTCGGTGGATGCAGGCGGGGGTATTGT
CACATGGCGCTGTGATTTTTGGTGGTTGGCGGTTCCTCTTTATTTGCCTG
TAATGACCGTGGTGGACGAGGTAGAACCAACACATGTCGTTTTGTTCTCG
GCGGTGATGAAGAGTGACGGTAAGAGGCTCTTCTTTTTTGGCGGTAACGA
GGCGGTAGACCCAAAAGATGGCGGTAATGCTTTGACCGTAATGCTAGACA
GCGGTCGTTGTCCGGTGGTAGAGGGATCTACATTTCCTTAACGCCTTACA
GTTCACCGGAAACTCGAATCTTGGAGGTAAGCGGTCATCTCGGTGCAGAT
GTGTGGAGCCCAAGCGAAGATTACTCCTTCTCCATCGGTCACTCTTTCAC
GCACACCCTTGCAGCTCTTGGGTCGCAATTTCCGTACCAACACTCACACG
AGACCAAGCAAACAGGAGAGTAAATTTGCCGTTGTTGACTTGTGTTTTAT
TGGTTGGTTGGACTCTGCGCATGGTTTTGGTGACGAAGAACCCGACCGCC
GAATAACCACTGAATCAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10401:126..895+

>mRNA_H-canaliculatus_F_contig10401.418.1 ID=mRNA_H-canaliculatus_F_contig10401.418.1|Name=mRNA_H-canaliculatus_F_contig10401.418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10401:126..895+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGAAACCCGCGAAATCCCCGCTGTACCTGTCCGATGAAATCTCTGCC
TGCGATAATCTGGCAATGCTGTGAGCATATCCAACACGGTGCACTATTTT
GTGACGTCGAAACGAGACGTCGCGCTCAGACAACAAGGCCGTGGGGAAAC
AAGGCAGGAAGCGAGGATGGCCAAGTTGTATTTCGCTTGTGTTTTCCAAG
GCTCTTTGCGGCATTGATTTTTTCGGTGGATGCAGGCGGGGGTATTGTCA
CATGGCGCTGTGATTTTTGGTGGTTGGCGGTTCCTCTTTATTTGCCTGTA
ATGACCGTGGTGGACGAGGTAGAACCAACACATGTCGTTTTGTTCTCGGC
GGTGATGAAGAGTGACGGTAAGAGGCTCTTCTTTTTTGGCGGTAACGAGG
CGGTAGACCCAAAAGATGGCGGTAATGCTTTGACCGTAATGCTAGACAGC
GGTCGTTGTCCGGTGGTAGAGGGATCTACATTTCCTTAAATGCGAAACCC
GCGAAATCCCCGCTGTACCTGTCCGATGAAATCTCTGCCTGCGATAATCT
GGCAATGCTGTGAGCATATCCAACACGGTGCACTATTTTGTGACGTCGAA
ACGAGACGTCGCGCTCAGACAACAAGGCCGTGGGGAAACAAGGCAGGAAG
CGAGGATGGCCAAGTTGTATTTCGCTTGTGTTTTCCAAGGCTCTTTGCGG
CATTGATTTTTTCGGTGGATGCAGGCGGGGGTATTGTCACATGGCGCTGT
GATTTTTGGTGGTTGGCGGTTCCTCTTTATTTGCCTGTAATGACCGTGGT
GGACGAGGTAGAACCAACACATGTCGTTTTGTTCTCGGCGGTGATGAAGA
GTGACGGTAAGAGGCTCTTCTTTTTTGGCGGTAACGAGGCGGTAGACCCA
AAAGATGGCGGTAATGCTTTGACCGTAATGCTAGACAGCGGTCGTTGTCC
GGTGGTAGAGGGATCTACATTTCCTTAA
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