mRNA_H-canaliculatus_F_contig1040.417.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE) HSP 1 Score: 779 bits (2011), Expect = 1.060e-271 Identity = 390/570 (68.42%), Postives = 458/570 (80.35%), Query Frame = 1 Query: 508 MESSPASEEPVANDEAWSCPICFMWFDMPVAPPCQHSFCAGCLKSVVRAAATRQRRNGNSQPLRPACPLCRETFTPEVVQPSAKIFEEMLRATVKCRNGGDCVAQFCPLRWKKHQQEECPSAKVQCMHNAVGCAWKGPRRDLTSHVECCAYEKIKGLVPRVSASLKQMHTQVHHLEARIMAQNAAAANTRAMLAHQRQPGHVFPAVYALLWRPTDWRRYSCPSPNG-VLSNVTLICLAPIVFLALWGAGMFGGGDGLRASDRVVCFGGVSVMGFVAILEYNNGAPWH------ILRGVAVGDLLLQFTARLVVYCTIRALPTWKRLPALLSLLAPLFYPTIVQAVHRLQVQVKNAHNQAQRAHAQPPLPPVEPLVSSAVKVHGAVINGVVRGSCMLVCGREATLVGEGLAKLVVFFSCAVLGPEKQDAFCDHVWVAMSTGIALDDKDRLKERHDMIFKEMKAPLPSTTGRKARGFTATACVCLFAWVVSCFRESLEMIGYSRLLLSILDTAHFRLELHIGRLVMGSLQQTRTDRSTDPGRTRANYLLISRIFFFWVVVGSIFFILLILTS 2196 +E +PA E A+ +AWSCP+CFMWFDMPV PPCQH+FCAGCLKSVVRAAA RQRR+GN+ P LCRE FTPEVVQPSA+IFEEML+ATV CRNG DC AQFCPLRWKKHQ EECPSA VQCMH+ VGC W+G RRDL+ HVE CAYEKIKGL+PRVSASLKQ+HTQVH LEAR+MAQNAA ANTRA+LAHQRQ G VFPAVYALLWRP +WR Y P P G VLSNVTLICLAPI+FLAL GAG+FGGG GL +R VC GV+++GFVA+LE++N +P+H +L+G+A+G+ LL+ TAR +VY ++ LP WKR PALL LLAPLFYPT+VQAVHR +VQVKNAHNQAQRA AQPPLPPVEP+ AVK HG V+NGVVRG+ ML+ LVGE LAKL VF A LGPEK DAF +HVW+ MS+GIALDDK RLK+RHD IF++++ PLP+ T R R A CVCLFA +V+ FR+ L+M+GYSRLLLS+LD+AHFR ELH+GR+VMGSLQQTRT++ + RTRA LL SR+ WVVVGS FF+L +LTS Sbjct: 13 VEEAPAEESGDAHGDAWSCPVCFMWFDMPVFPPCQHTFCAGCLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEMLKATVTCRNG-DCAAQFCPLRWKKHQ-EECPSAVVQCMHHLVGCVWEGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLAHQRQAGSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPPVEPV---AVKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQTRTNQDPNFARTRARDLLRSRLLLLWVVVGSSFFLLFMLTS 577
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: A0A7S3Y988_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y988_HETAK) HSP 1 Score: 89.7 bits (221), Expect = 7.120e-16 Identity = 44/87 (50.57%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 556 WSCPICFMWFDMPVAPPCQHSFCAGCLKSVVRAAA-TRQRRNGNSQPLR--PACPLCRETFTPEVVQPSAKIFEEMLRATVKCRNGG 807 W CPIC W PVAPPC H+ CAGCL+ VVR A RR G P PACPLCR F P V+P ++ +MLRA V+C G Sbjct: 194 WHCPICLAWLTAPVAPPCGHTCCAGCLQKVVRQAVFPAPRRPGERPPSAQDPACPLCRAKFKPADVRPERALYAQMLRARVRCPQAG 280
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: UPI001425A99E (ligand of Numb protein X 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A99E) HSP 1 Score: 72.8 bits (177), Expect = 2.170e-9 Identity = 50/167 (29.94%), Postives = 73/167 (43.71%), Query Frame = 1 Query: 484 QATGAVSGMESSPASEEPVANDEAWSCPICFMWFDMPVAPPCQHSFCAGCLKSVVRAAATRQRRNGNSQPLRPACPLCRETFTPEVVQPSAKIFEEML-RATVKCRNGGDCVAQFCPLRWKKHQQEECPSAKVQCMHNAVGCAWKGPRRDLTSHVECCAYEKIKGLV 981 Q G V ++ + + A DE +C IC P C H++CA C++SV+R RQ CP+ R T + +PS+ I + ML + V C N C + H C C+H A GC ++G R L SH+ C + K KG+V Sbjct: 17 QTCGQVHDIQGNHLYDYLEAVDEDLTCHICLQPLVNPTDTTCGHTYCAKCIRSVLRVH--RQ------------CPVDRSPLTAQDCRPSSLIIKRMLDKLPVVCPNTTYCDDAMQRSDLEAHLANRCKGNMSHCIHAAHGCTFRGSRTALESHIRECPHAKQKGVV 169
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: W5K6E2_ASTMX (Uncharacterized protein n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K6E2_ASTMX) HSP 1 Score: 64.7 bits (156), Expect = 6.680e-7 Identity = 48/167 (28.74%), Postives = 69/167 (41.32%), Query Frame = 1 Query: 526 SEEPVANDEAWSCPICFMWFDMPVAPPCQHSFCAGCLKSVVRAAATRQRRNGNSQPLRPACPLCRETFTPEVVQPSAKIFEEMLRATVKCRNGGDCVAQFCPLRWKKHQQEECPSAKVQCMHNAVGCAWKGPRRDLTSHVECCAYEKIKGLVPRVSASLKQMHTQVH 1026 +E V + +++SCPIC PVA PC HSFC GC+K G+ Q +CP CR TFTP V I E+ K R A P + + C K + + + C + H E AY+K K + S +L++ +H Sbjct: 2 AEAAVKSIDSFSCPICLDLLKDPVAIPCGHSFCLGCIKDCWA---------GDDQRKVYSCPQCRHTFTPRPVLNKNTILAELSEGLRKTRLQAAPPAADSPAGSGGVECDVCTGTKHTAVKSCLACLLSFCEAHIQPHYEIPAYKKHK--LVEASMNLQEKICSLH 157
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: UPI0018A791CF (LOW QUALITY PROTEIN: cysteine and histidine-rich protein 1 homolog n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A791CF) HSP 1 Score: 60.5 bits (145), Expect = 3.520e-6 Identity = 36/145 (24.83%), Postives = 60/145 (41.38%), Query Frame = 1 Query: 571 CFMWFDMPVAPPCQ----HSFCAGCLKSVVRAAATRQRRNGNSQPLRPACPLCRETFTPEVVQPSAKIFEEMLRATVKCRNGGDCVAQFCPLRWKK-----HQQEECPSAKVQCMHNAVGCAWKGPRRDLTSHVECCAYEKIKGL 978 C + D+P + Q H CAGC ++ A R CP CR + + + + + + +C QFC ++ + H+ E C V C +N +GC W+GP D++SH + C + K+ L Sbjct: 57 CAVCLDLPRSAVYQCSNGHLMCAGCFTHLLADARIRDETA--------TCPNCRVEISRSLATRNLAVEKAVSELPAEC--------QFCSQKYPRNSLDRHEMELCEERPVHCRYNVLGCGWRGPHHDVSSHEQQCQHRKLFSL 185
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: UPI001E676961 (cysteine and histidine-rich protein 1 homolog isoform X1 n=5 Tax=Decapoda TaxID=6683 RepID=UPI001E676961) HSP 1 Score: 58.5 bits (140), Expect = 3.400e-5 Identity = 36/144 (25.00%), Postives = 58/144 (40.28%), Query Frame = 1 Query: 571 CFMWFDMPVAPPCQ----HSFCAGCLKSVVRAAATRQRRNGNSQPLRPACPLCRETFTPEVVQPSAKIFEEMLRATVKCRNGGDCVAQFCPLRWKK-----HQQEECPSAKVQCMHNAVGCAWKGPRRDLTSHVECCAYEKIKG 975 C + D+P + Q H CAGC ++ A R CP CR + + + + + + +C QFC ++ + H+ E C V C +N +GC W+GP D+TSH + C + G Sbjct: 60 CAVCLDLPRSAVYQCSNGHLMCAGCFTHLLADARIRDETA--------TCPNCRVEISRSLATRNLAVEKAVSELPAEC--------QFCGQKYPRNSLDRHEVELCEERPVHCQYNVLGCGWRGPHHDVTSHEQQCQHPSHTG 187
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Match: UPI001FB7B6FE (cysteine and histidine-rich protein 1 homolog isoform X2 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB7B6FE) HSP 1 Score: 57.8 bits (138), Expect = 3.670e-5 Identity = 35/144 (24.31%), Postives = 58/144 (40.28%), Query Frame = 1 Query: 571 CFMWFDMPVAPPCQ----HSFCAGCLKSVVRAAATRQRRNGNSQPLRPACPLCRETFTPEVVQPSAKIFEEMLRATVKCRNGGDCVAQFCPLRWKK-----HQQEECPSAKVQCMHNAVGCAWKGPRRDLTSHVECCAYEKIKG 975 C + D+P + Q H CAGC ++ A R CP CR + + + + + + +C QFC ++ + H+ E C V C +N +GC W+GP D++SH + C + G Sbjct: 57 CAVCLDLPRSAVYQCSNGHLMCAGCFTHLLADARIRDETA--------TCPNCRVEISRSLATRNLAVEKAVSELPAEC--------QFCSQKYPRNSLDRHEMELCEERPVHCRYNVLGCGWRGPHHDVSSHEQQCQHPSHTG 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1040.417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1040.417.1 >prot_H-canaliculatus_F_contig1040.417.1 ID=prot_H-canaliculatus_F_contig1040.417.1|Name=mRNA_H-canaliculatus_F_contig1040.417.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=564bp MESSPASEEPVANDEAWSCPICFMWFDMPVAPPCQHSFCAGCLKSVVRAAback to top mRNA from alignment at H-canaliculatus_F_contig1040:19114..28584+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1040.417.1 ID=mRNA_H-canaliculatus_F_contig1040.417.1|Name=mRNA_H-canaliculatus_F_contig1040.417.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9471bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1040:19114..28584+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1040:19114..28584+ >mRNA_H-canaliculatus_F_contig1040.417.1 ID=mRNA_H-canaliculatus_F_contig1040.417.1|Name=mRNA_H-canaliculatus_F_contig1040.417.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3384bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1040:19114..28584+ (Hapterophycus canaliculatus Oshoro5f female)back to top |