mRNA_H-canaliculatus_F_contig10393.405.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10393.405.1
Unique NamemRNA_H-canaliculatus_F_contig10393.405.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10393.405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10393contigH-canaliculatus_F_contig10393:130..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1184
Cds size1182
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928680.4718874-CDS-H-canaliculatus_F_contig10393:129..4441622928680.4718874-CDS-H-canaliculatus_F_contig10393:129..444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10393 130..444 +
1696845523.9749277-CDS-H-canaliculatus_F_contig10393:129..4441696845523.9749277-CDS-H-canaliculatus_F_contig10393:129..444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10393 130..444 +
1622928680.4852629-CDS-H-canaliculatus_F_contig10393:636..15031622928680.4852629-CDS-H-canaliculatus_F_contig10393:636..1503Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10393 637..1503 +
1696845523.983555-CDS-H-canaliculatus_F_contig10393:636..15031696845523.983555-CDS-H-canaliculatus_F_contig10393:636..1503Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10393 637..1503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10393.405.1prot_H-canaliculatus_F_contig10393.405.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10393 130..1503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10393.405.1

>prot_H-canaliculatus_F_contig10393.405.1 ID=prot_H-canaliculatus_F_contig10393.405.1|Name=mRNA_H-canaliculatus_F_contig10393.405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=394bp
MSPVLIDLASPEGTATSASAPPTLTPTDSPPTAPDANESSTSARIAQTTI
TNMNRPTATTSSSTPNTSSSSTKASTTTGRISTSSSSTKASTTTGRISTS
SSSTKASTMTGRISPSSSSTKVSDMTGRISTSSSSTKASTMTGRISTSSS
STKVSTMTGRISTSSSSKASGITPTGSERGSKTSSIINRTVNSRSSSKAS
TTTSRISTTSTSTSKTPTGSERGSKASSMITRTAANRNITNTPPSKSTIT
SSITNTPTSNITITSAATSSTRDSHTSSGQRGTTGVAEASVGPNMAALSA
GITPSSTRRRVASYPSAKCPPMRFSGGPDAIVSPPRPLSGSSNKPQRRRS
LDGASAAGAAIPSATPPLRSDMVADAPARASIHTVSAVKARQCS
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mRNA from alignment at H-canaliculatus_F_contig10393:130..1503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10393.405.1 ID=mRNA_H-canaliculatus_F_contig10393.405.1|Name=mRNA_H-canaliculatus_F_contig10393.405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1374bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10393:130..1503+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCCTGTGCTGATCGATCTCGCCTCTCCGGAGGGCACCGCCACGTC
AGCCTCCGCACCGCCTACCCTCACCCCGACCGATTCTCCCCCGACCGCTC
CCGACGCCAACGAAAGCAGCACCTCTGCCAGGATCGCCCAGACTACCATC
ACCAACATGAACAGACCTACCGCCACGACCAGCAGCAGCACCCCCAACAC
CAGCAGCAGCAGCACCAAGGCCTCTACCACGACCGGCCGCATCTCCACCA
GCAGCAGCAGCACCAAGGCCTCTACCACGACCGGCCGCATCTCCACCAGC
AGCAGCAGCACCAAGGCCTCTACCATGACCGGCCGCATTTCCACCACCAG
CAGCAGCACCAAGGCCTCTACCATGACCGGCCGTATCTCCACCAGCAGTA
GCACCAAGGCCTCTGCCGTGACCGGCCGCATCTCCACTAGCAGCAGTAGC
ACCAAGGCCTCTACCATGGCCGGCCGCATCTCCACTAGCAGTAGCAGCAG
CACCAAGGCCTCTACCATGACCGGCCGTATCTCCCCTAGCAGCAGCAGCA
CCAAGGTCTCTGATATGACCGGCCGCATCTCCACTAGCAGCAGCAGCACC
AAGGCCTCTACCATGACCGGCCGTATCTCCACTAGCAGCAGCAGCACCAA
GGTCTCTACCATGACCGGCCGCATCTCCACCAGCAGCAGCAGCAAGGCCT
CCGGCATTACCCCCACCGGCAGCGAGAGGGGCAGCAAGACCTCCAGCATA
ATCAACCGTACCGTCAACAGCAGGAGCAGCAGCAAGGCCTCCACCACGAC
CAGCCGCATCTCCACCACCAGCACTAGCACCAGCAAGACCCCCACCGGCA
GCGAGAGGGGCAGCAAGGCCTCCAGCATGATCACCCGTACCGCCGCCAAC
CGCAACATCACCAACACCCCACCCAGCAAATCCACGATCACCAGCAGCAT
CACCAACACCCCCACCAGCAACATCACCATCACCAGCGCCGCTACCAGCA
GCACGAGGGACAGCCACACCAGCAGCGGCCAGAGGGGCACCACTGGCGTC
GCCGAAGCCTCCGTCGGCCCCAACATGGCGGCTCTCTCCGCCGGCATCAC
GCCCAGCTCCACTCGCCGCCGAGTCGCCAGCTACCCCAGCGCCAAGTGCC
CGCCGATGCGTTTTAGTGGTGGGCCTGATGCGATCGTCTCGCCGCCGCGC
CCGCTGTCCGGGAGCAGCAACAAGCCGCAGAGGAGGCGGTCCCTCGATGG
TGCCAGCGCCGCTGGAGCTGCCATCCCTTCGGCAACGCCGCCGCTCAGGA
GCGACATGGTTGCCGACGCTCCCGCACGCGCTTCCATCCACACGGTGAGC
GCGGTGAAGGCCAGGCAGTGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10393:130..1503+

>mRNA_H-canaliculatus_F_contig10393.405.1 ID=mRNA_H-canaliculatus_F_contig10393.405.1|Name=mRNA_H-canaliculatus_F_contig10393.405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2364bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10393:130..1503+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCCTGTGCTGATCGATCTCGCCTCTCCGGAGGGCACCGCCACGTC
AGCCTCCGCACCGCCTACCCTCACCCCGACCGATTCTCCCCCGACCGCTC
CCGACGCCAACGAAAGCAGCACCTCTGCCAGGATCGCCCAGACTACCATC
ACCAACATGAACAGACCTACCGCCACGACCAGCAGCAGCACCCCCAACAC
CAGCAGCAGCAGCACCAAGGCCTCTACCACGACCGGCCGCATCTCCACCA
GCAGCAGCAGCACCAAGGCCTCTACCACGACCGGCCGCATCTCCACCAGC
AGCAGCAGCACCAAGATGTCCCCTGTGCTGATCGATCTCGCCTCTCCGGA
GGGCACCGCCACGTCAGCCTCCGCACCGCCTACCCTCACCCCGACCGATT
CTCCCCCGACCGCTCCCGACGCCAACGAAAGCAGCACCTCTGCCAGGATC
GCCCAGACTACCATCACCAACATGAACAGACCTACCGCCACGACCAGCAG
CAGCACCCCCAACACCAGCAGCAGCAGCACCAAGGCCTCTACCACGACCG
GCCGCATCTCCACCAGCAGCAGCAGCACCAAGGCCTCTACCACGACCGGC
CGCATCTCCACCAGCAGCAGCAGCACCAAGGCCTCTACCATGACCGGCCG
TATCTCCCCTAGCAGCAGCAGCACCAAGGTCTCTGATATGACCGGCCGCA
TCTCCACTAGCAGCAGCAGCACCAAGGCCTCTACCATGACCGGCCGTATC
TCCACTAGCAGCAGCAGCACCAAGGTCTCTACCATGACCGGCCGCATCTC
CACCAGCAGCAGCAGCAAGGCCTCCGGCATTACCCCCACCGGCAGCGAGA
GGGGCAGCAAGACCTCCAGCATAATCAACCGTACCGTCAACAGCAGGAGC
AGCAGCAAGGCCTCCACCACGACCAGCCGCATCTCCACCACCAGCACTAG
CACCAGCAAGACCCCCACCGGCAGCGAGAGGGGCAGCAAGGCCTCCAGCA
TGATCACCCGTACCGCCGCCAACCGCAACATCACCAACACCCCACCCAGC
AAATCCACGATCACCAGCAGCATCACCAACACCCCCACCAGCAACATCAC
CATCACCAGCGCCGCTACCAGCAGCACGAGGGACAGCCACACCAGCAGCG
GCCAGAGGGGCACCACTGGCGTCGCCGAAGCCTCCGTCGGCCCCAACATG
GCGGCTCTCTCCGCCGGCATCACGCCCAGCTCCACTCGCCGCCGAGTCGC
CAGCTACCCCAGCGCCAAGTGCCCGCCGATGCGTTTTAGTGGTGGGCCTG
ATGCGATCGTCTCGCCGCCGCGCCCGCTGTCCGGGAGCAGCAACAAGCCG
CAGAGGAGGCGGTCCCTCGATGGTGCCAGCGCCGCTGGAGCTGCCATCCC
TTCGGCAACGCCGCCGCTCAGGAGCGACATGGTTGCCGACGCTCCCGCAC
GCGCTTCCATCCACACGGTGAGCGCGGTGAAGGCCAGGCAGTGCAGCGCC
TCTACCATGACCGGCCGTATCTCCCCTAGCAGCAGCAGCACCAAGGTCTC
TGATATGACCGGCCGCATCTCCACTAGCAGCAGCAGCACCAAGGCCTCTA
CCATGACCGGCCGTATCTCCACTAGCAGCAGCAGCACCAAGGTCTCTACC
ATGACCGGCCGCATCTCCACCAGCAGCAGCAGCAAGGCCTCCGGCATTAC
CCCCACCGGCAGCGAGAGGGGCAGCAAGACCTCCAGCATAATCAACCGTA
CCGTCAACAGCAGGAGCAGCAGCAAGGCCTCCACCACGACCAGCCGCATC
TCCACCACCAGCACTAGCACCAGCAAGACCCCCACCGGCAGCGAGAGGGG
CAGCAAGGCCTCCAGCATGATCACCCGTACCGCCGCCAACCGCAACATCA
CCAACACCCCACCCAGCAAATCCACGATCACCAGCAGCATCACCAACACC
CCCACCAGCAACATCACCATCACCAGCGCCGCTACCAGCAGCACGAGGGA
CAGCCACACCAGCAGCGGCCAGAGGGGCACCACTGGCGTCGCCGAAGCCT
CCGTCGGCCCCAACATGGCGGCTCTCTCCGCCGGCATCACGCCCAGCTCC
ACTCGCCGCCGAGTCGCCAGCTACCCCAGCGCCAAGTGCCCGCCGATGCG
TTTTAGTGGTGGGCCTGATGCGATCGTCTCGCCGCCGCGCCCGCTGTCCG
GGAGCAGCAACAAGCCGCAGAGGAGGCGGTCCCTCGATGGTGCCAGCGCC
GCTGGAGCTGCCATCCCTTCGGCAACGCCGCCGCTCAGGAGCGACATGGT
TGCCGACGCTCCCGCACGCGCTTCCATCCACACGGTGAGCGCGGTGAAGG
CCAGGCAGTGCAGC
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