mRNA_H-canaliculatus_F_contig10384.397.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10384.397.1
Unique NamemRNA_H-canaliculatus_F_contig10384.397.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10384.397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10384contigH-canaliculatus_F_contig10384:4110..4457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size348
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928679.6674812-CDS-H-canaliculatus_F_contig10384:4109..44331622928679.6674812-CDS-H-canaliculatus_F_contig10384:4109..4433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10384 4110..4433 +
1696845523.5907404-CDS-H-canaliculatus_F_contig10384:4109..44331696845523.5907404-CDS-H-canaliculatus_F_contig10384:4109..4433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10384 4110..4433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928679.680884-UTR-H-canaliculatus_F_contig10384:4433..44571622928679.680884-UTR-H-canaliculatus_F_contig10384:4433..4457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10384 4434..4457 +
1696845523.5998137-UTR-H-canaliculatus_F_contig10384:4433..44571696845523.5998137-UTR-H-canaliculatus_F_contig10384:4433..4457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10384 4434..4457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10384.397.1prot_H-canaliculatus_F_contig10384.397.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10384 4110..4433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10384.397.1

>prot_H-canaliculatus_F_contig10384.397.1 ID=prot_H-canaliculatus_F_contig10384.397.1|Name=mRNA_H-canaliculatus_F_contig10384.397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MLRSSGRGSWAAGGVAVAVAPSLLGVFPHAEQPLDASRWPFQSVRDGCDP
NTLSRCLDLLSREKSQRHRRATLSRDKQNSAVCSTNYSAFCNSHLAAQKR
MRMRPCL*
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mRNA from alignment at H-canaliculatus_F_contig10384:4110..4457+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10384.397.1 ID=mRNA_H-canaliculatus_F_contig10384.397.1|Name=mRNA_H-canaliculatus_F_contig10384.397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10384:4110..4457+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCGCAGTAGCGGTCGCGGCTCCTGGGCTGCTGGCGGTGTTGCTGT
CGCCGTAGCTCCTTCGCTCTTGGGCGTCTTCCCGCACGCTGAGCAACCCC
TCGACGCGTCCAGATGGCCGTTCCAAAGTGTGCGAGATGGGTGCGACCCG
AACACACTCTCTCGCTGTCTCGACTTGCTTTCTAGGGAAAAGAGTCAACG
GCATCGAAGGGCTACCCTCTCCCGAGACAAACAAAATAGTGCTGTTTGCA
GCACAAATTATAGTGCCTTTTGCAACAGTCACCTTGCCGCCCAGAAACGA
ATGAGGATGAGGCCATGCCTGTAGTACAATGAAGGAGATCCGCCCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10384:4110..4457+

>mRNA_H-canaliculatus_F_contig10384.397.1 ID=mRNA_H-canaliculatus_F_contig10384.397.1|Name=mRNA_H-canaliculatus_F_contig10384.397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10384:4110..4457+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCGCAGTAGCGGTCGCGGCTCCTGGGCTGCTGGCGGTGTTGCTGT
CGCCGTAGCTCCTTCGCTCTTGGGCGTCTTCCCGCACGCTGAGCAACCCC
TCGACGCGTCCAGATGGCCGTTCCAAAGTGTGCGAGATGGGTGCGACCCG
AACACACTCTCTCGCTGTCTCGACTTGCTTTCTAGGGAAAAGAGTCAACG
GCATCGAAGGGCTACCCTCTCCCGAGACAAACAAAATAGTGCTGTTTGCA
GCACAAATTATAGTGCCTTTTGCAACAGTCACCTTGCCGCCCAGAAACGA
ATGAGGATGAGGCCATGCCTGTAGATGCTGCGCAGTAGCGGTCGCGGCTC
CTGGGCTGCTGGCGGTGTTGCTGTCGCCGTAGCTCCTTCGCTCTTGGGCG
TCTTCCCGCACGCTGAGCAACCCCTCGACGCGTCCAGATGGCCGTTCCAA
AGTGTGCGAGATGGGTGCGACCCGAACACACTCTCTCGCTGTCTCGACTT
GCTTTCTAGGGAAAAGAGTCAACGGCATCGAAGGGCTACCCTCTCCCGAG
ACAAACAAAATAGTGCTGTTTGCAGCACAAATTATAGTGCCTTTTGCAAC
AGTCACCTTGCCGCCCAGAAACGAATGAGGATGAGGCCATGCCTGTAG
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