mRNA_H-canaliculatus_F_contig1038.391.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1038.391.1
Unique NamemRNA_H-canaliculatus_F_contig1038.391.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A137QA73_9AGAR (ATP-dependent DNA helicase (Fragment) n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QA73_9AGAR)

HSP 1 Score: 67.8 bits (164), Expect = 2.610e-11
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGK--MCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++AA+DAV  +VN SG+   F I ++ G GK  +C T  ++A +R++GH+ LC  S+GIA LLL GG TAHS FKIP
Sbjct:   29 NHEQKAAYDAVMESVN-SGNSRIFFIHSAGGCGKTYLCNT--IAATVRAQGHIALCVASSGIAVLLLEGGRTAHSCFKIP 105
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A165GAY9_9BASI (ATP-dependent DNA helicase (Fragment) n=2 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165GAY9_9BASI)

HSP 1 Score: 67.4 bits (163), Expect = 7.040e-11
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGKMCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++AAF+A+   + ++  GG F +    G+GK     A+ A+LR++G +VLC  S+GIA LLL GG TAHSTFKIP
Sbjct:  111 NDEQQAAFNAI---IQHANHGGLFWLQGPGGTGKTFVYKAVCAELRAQGKIVLCVASSGIAALLLPGGRTAHSTFKIP 185
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A137QK45_9AGAR (ATP-dependent DNA helicase n=2 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QK45_9AGAR)

HSP 1 Score: 65.5 bits (158), Expect = 8.940e-11
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGK--MCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++A +DAV  ++N SG+   F I ++ G GK  +C T  ++A +R++GH+ LC  S+GIA LLL GG TAHS FKIP
Sbjct:   46 NHEQKAVYDAVMRSIN-SGNSRMFFIHSAGGCGKTYLCNT--IAAAVRAQGHIALCVASSGIAALLLEGGRTAHSHFKIP 122
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: X8J4H0_9AGAM (ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=X8J4H0_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 8.950e-11
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGKMCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIPFGDNLVRVLSVGSNLNLNAPKYSNVPIFLSGT 330
            N E+R +F  V  +VNN  +G  F +D  AG+GK     AL   LR++  +VLC  S+G+A LLL GG T+HS FKIP        + + +N   N PK SN+   ++ T
Sbjct:  500 NDEQRESFQRVLASVNND-EGTTFFLDGPAGTGKTFLYQALCYTLRAQDKIVLCVASSGLAALLLPGGKTSHSVFKIP--------IDIKANSTCNIPKRSNLAALIART 600
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A5C3KGL2_9AGAR (ATP-dependent DNA helicase (Fragment) n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3KGL2_9AGAR)

HSP 1 Score: 65.1 bits (157), Expect = 9.370e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGKMCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++ AFD ++ AV+  G  G + ++  AG+GK      L    R+ G +VLC  S+GIA LLL GG TAHSTFKIP
Sbjct:   37 NEEQQQAFDTITAAVDG-GQSGLYFLNGPAGTGKTFVYNTLCYHFRASGKIVLCVASSGIASLLLIGGRTAHSTFKIP 113
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A137QZR3_9AGAR (ATP-dependent DNA helicase n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QZR3_9AGAR)

HSP 1 Score: 67.8 bits (164), Expect = 2.090e-10
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGK--MCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++AA+DAV  +VN SG+   F I ++ G GK  +C T  ++A +R++GH+ LC  S+GIA LLL GG TAHS FKIP
Sbjct:   78 NHEQKAAYDAVMESVN-SGNSRIFFIHSAGGCGKTYLCNT--IAATVRAQGHIALCVASSGIAVLLLEGGRTAHSCFKIP 154
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A137QXB0_9AGAR (ATP-dependent DNA helicase (Fragment) n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QXB0_9AGAR)

HSP 1 Score: 65.9 bits (159), Expect = 2.810e-10
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGK--MCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++A +DAV  ++N SG+   F I ++ G GK  +C T  ++A +R++GH+ LC  S+GIA LLL GG TAHS FKIP
Sbjct:  128 NHEQKAVYDAVMRSIN-SGNSRMFFIHSAGGCGKTYLCNT--IAAAVRAQGHIALCVASSGIAALLLEGGRTAHSCFKIP 204
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A165EC91_9BASI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165EC91_9BASI)

HSP 1 Score: 64.3 bits (155), Expect = 3.620e-10
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGKMCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N+E+R AFD +   + ++  GG F +    G+GK     A+ A+LR++G +VLC  S+GIA +LL GG TAHS FKIP
Sbjct:   51 NQEQRVAFDTI---IQHTEIGGTFWLQGPGGTGKTFVYKAVCAELRAQGKIVLCVASSGIAAVLLPGGRTAHSMFKIP 125
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A0C9TB59_PAXIN (ATP-dependent DNA helicase (Fragment) n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9TB59_PAXIN)

HSP 1 Score: 63.9 bits (154), Expect = 4.410e-10
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVN-NSGDGGAFMIDASAGSGKMCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E+R  +DA+   V+   G G AF + ++ G GK      ++A +R+KG +VLC  S+GIA LLL+GG TAHS FKIP
Sbjct:   40 NAEQRQLYDAILECVDFGQGHGEAFFVHSAGGCGKTYVCNLIAAAVRAKGKIVLCVASSGIASLLLSGGRTAHSRFKIP 118
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Match: A0A137QZC5_9AGAR (ATP-dependent DNA helicase (Fragment) n=2 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QZC5_9AGAR)

HSP 1 Score: 65.5 bits (158), Expect = 6.670e-10
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 NREERAAFDAVSIAVNNSGDGGAFMIDASAGSGK--MCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHSTFKIP 234
            N E++A +DAV  ++N SG+   F I ++ G GK  +C T  ++A +R++GH+ LC  S+GIA LLL GG TAHS FKIP
Sbjct:   66 NHEQKAVYDAVMRSIN-SGNSRMFFIHSAGGCGKTYLCNT--IAAAVRAQGHIALCVASSGIAALLLEGGRTAHSHFKIP 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1038.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A137QA73_9AGAR2.610e-1151.25ATP-dependent DNA helicase (Fragment) n=1 Tax=Leuc... [more]
A0A165GAY9_9BASI7.040e-1148.72ATP-dependent DNA helicase (Fragment) n=2 Tax=Calo... [more]
A0A137QK45_9AGAR8.940e-1148.75ATP-dependent DNA helicase n=2 Tax=Leucoagaricus s... [more]
X8J4H0_9AGAM8.950e-1140.00ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhiz... [more]
A0A5C3KGL2_9AGAR9.370e-1147.44ATP-dependent DNA helicase (Fragment) n=1 Tax=Copr... [more]
A0A137QZR3_9AGAR2.090e-1051.25ATP-dependent DNA helicase n=1 Tax=Leucoagaricus s... [more]
A0A137QXB0_9AGAR2.810e-1048.75ATP-dependent DNA helicase (Fragment) n=1 Tax=Leuc... [more]
A0A165EC91_9BASI3.620e-1046.15ATP-dependent DNA helicase (Fragment) n=1 Tax=Calo... [more]
A0A0C9TB59_PAXIN4.410e-1046.84ATP-dependent DNA helicase (Fragment) n=1 Tax=Paxi... [more]
A0A137QZC5_9AGAR6.670e-1048.75ATP-dependent DNA helicase (Fragment) n=2 Tax=Leuc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1038contigH-canaliculatus_F_contig1038:1224..1668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog3750.XP_008362279.1
KEGG koko:K15255
EggNOG free text desc.Helicase-like protein
EggNOG OGs37I5H@33090,3GC0A@35493,4JT7V@91835,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1038.391.1prot_H-canaliculatus_F_contig1038.391.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1038 1296..1565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928678.8935187-UTR-H-canaliculatus_F_contig1038:1223..12951622928678.8935187-UTR-H-canaliculatus_F_contig1038:1223..1295Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 1224..1295 +
1696845523.229717-UTR-H-canaliculatus_F_contig1038:1223..12951696845523.229717-UTR-H-canaliculatus_F_contig1038:1223..1295Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 1224..1295 +
1622928678.920871-UTR-H-canaliculatus_F_contig1038:1565..16681622928678.920871-UTR-H-canaliculatus_F_contig1038:1565..1668Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 1566..1668 +
1696845523.2509735-UTR-H-canaliculatus_F_contig1038:1565..16681696845523.2509735-UTR-H-canaliculatus_F_contig1038:1565..1668Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 1566..1668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928678.9091845-CDS-H-canaliculatus_F_contig1038:1295..15651622928678.9091845-CDS-H-canaliculatus_F_contig1038:1295..1565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1038 1296..1565 +
1696845523.2417998-CDS-H-canaliculatus_F_contig1038:1295..15651696845523.2417998-CDS-H-canaliculatus_F_contig1038:1295..1565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1038 1296..1565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1038.391.1

>prot_H-canaliculatus_F_contig1038.391.1 ID=prot_H-canaliculatus_F_contig1038.391.1|Name=mRNA_H-canaliculatus_F_contig1038.391.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MIDASAGSGKMCTTCALSADLRSKGHLVLCSRSTGIAELLLAGGLTAHST
FKIPFGDNLVRVLSVGSNLNLNAPKYSNVPIFLSGTRSQ*
back to top

mRNA from alignment at H-canaliculatus_F_contig1038:1224..1668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1038.391.1 ID=mRNA_H-canaliculatus_F_contig1038.391.1|Name=mRNA_H-canaliculatus_F_contig1038.391.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=445bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1038:1224..1668+ (Hapterophycus canaliculatus Oshoro5f female)
AATCGTGAGGAGAGGGCAGCGTTCGACGCTGTTTCGATAGCTGTCAACAA
CAGTGGGGATGGTGGCGCCTTCATGATAGATGCATCCGCTGGTTCTGGAA
AAATGTGCACCACGTGTGCTCTGTCTGCTGACCTCAGGTCGAAGGGCCAT
TTAGTATTATGCTCTCGGTCAACAGGTATTGCTGAGCTCCTATTGGCCGG
GGGATTGACAGCTCATTCCACCTTCAAAATACCGTTCGGTGACAATCTCG
TCCGGGTTCTTTCTGTAGGGTCAAACCTGAATCTGAACGCGCCAAAGTAC
TCAAACGTGCCGATCTTCTTATCTGGGACGAGATCCCAGTGAGTAACAGG
CTCGCCCCGGAGGTAATGGATTTGGTTGAGACCTTCGGCGTAGCGATGAC
AAGCCCTTCGGGGGTCCTACTGTTCTCTTTTCAGGCGACTTCCGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1038:1224..1668+

>mRNA_H-canaliculatus_F_contig1038.391.1 ID=mRNA_H-canaliculatus_F_contig1038.391.1|Name=mRNA_H-canaliculatus_F_contig1038.391.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1038:1224..1668+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATAGATGCATCCGCTGGTTCTGGAAAAATGTGCACCACGTGTGCTCT
GTCTGCTGACCTCAGGTCGAAGGGCCATTTAGTATTATGCTCTCGGTCAA
CAGGTATTGCTGAGCTCCTATTGGCCGGGGGATTGACAGCTCATTCCACC
TTCAAAATACCGTTCGGTGACAATCTCGTCCGGGTTCTTTCTGTAGGGTC
AAACCTGAATCTGAACGCGCCAAAGTACTCAAACGTGCCGATCTTCTTAT
CTGGGACGAGATCCCAGTGAATGATAGATGCATCCGCTGGTTCTGGAAAA
ATGTGCACCACGTGTGCTCTGTCTGCTGACCTCAGGTCGAAGGGCCATTT
AGTATTATGCTCTCGGTCAACAGGTATTGCTGAGCTCCTATTGGCCGGGG
GATTGACAGCTCATTCCACCTTCAAAATACCGTTCGGTGACAATCTCGTC
CGGGTTCTTTCTGTAGGGTCAAACCTGAATCTGAACGCGCCAAAGTACTC
AAACGTGCCGATCTTCTTATCTGGGACGAGATCCCAGTGA
back to top