mRNA_H-canaliculatus_F_contig10213.232.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.020e-23 Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 1 Query: 1 MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
+GA AVSEEDLAPLV AAKKARAAGSTAPQVQ+LL AVDED+IGT+A G +ERVVAA +TTLADI+D+ATK
Sbjct: 840 IGAPAAVSEEDLAPLVLAAKKARAAGSTAPQVQQLLGAVDEDKIGTYAIGVKERVVAASETTLADIDDAATK 911
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: A0A6H5KSC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC2_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.180e-20 Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1 Query: 1 MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
+G AVSEEDL PLV AA+ R AG + VQKLLAAVDED+IGTHA GA++RVVAA++TTLADINDSATK
Sbjct: 23 LGVQAAVSEEDLVPLVKAAEFVRVAGGWSRMVQKLLAAVDEDQIGTHAVGAKDRVVAAVETTLADINDSATK 94
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 8.370e-20 Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1 Query: 1 MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSA 210
+G AVSE+ LAPLV+AAK+AR AGST+P+ Q+LLAAVDED+IG HA GA++RVVAA++TTLADIND+A
Sbjct: 363 LGVPAAVSEKYLAPLVSAAKEARLAGSTSPKAQELLAAVDEDQIGAHAVGAKDRVVAAVETTLADINDAA 432
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: A0A6H5KNS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.150e-19 Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 1 Query: 16 AVSEEDLAPLVAAAKKARAAGSTAPQVQK---------LLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
AVSEEDLAPLV AAKKARAAGSTAPQV K LL AVDED+IGT+A GA++RVVAA +TTLADI+D++TK
Sbjct: 496 AVSEEDLAPLVLAAKKARAAGSTAPQVWKGDVPPQVRQLLGAVDEDKIGTYAIGAKDRVVAASETTLADIDDASTK 571
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: A0A6H5JKN0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN0_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 2.770e-8 Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 Query: 10 SDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
S V E+DL L +AAKKA+ AGST PQ+ ++ A ED +GT+A G +RV+AA +A + D+A K
Sbjct: 154 SSGVKEDDLRGLESAAKKAKTAGSTLPQIDAMVGAAREDNMGTYAEGLMDRVLAASKDAIAKVKDAAAK 222
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 2.500e-7 Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1 Query: 19 VSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
V E+DL L +AAK+A+ AGST PQ+ ++ A ED++GT+A G +RV+AA +A + D+A +
Sbjct: 778 VKEDDLRGLESAAKRAKTAGSTLPQIDAMVGAAREDKMGTYAEGLMDRVLAASKDAIAKVKDAAAR 843
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 19 VSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSA 210
+S +D L +AAKKAR AG+ PQV++ + A ED +GT AAGA ER++AA + L IN S+
Sbjct: 841 LSSDDEYLLESAAKKARKAGACVPQVEQFVQAAREDGVGTFAAGALERLLAASEEALKSINASS 904 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10213.232.1 >prot_H-canaliculatus_F_contig10213.232.1 ID=prot_H-canaliculatus_F_contig10213.232.1|Name=mRNA_H-canaliculatus_F_contig10213.232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGback to top mRNA from alignment at H-canaliculatus_F_contig10213:180..1261- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10213.232.1 ID=mRNA_H-canaliculatus_F_contig10213.232.1|Name=mRNA_H-canaliculatus_F_contig10213.232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10213:180..1261- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10213:180..1261- >mRNA_H-canaliculatus_F_contig10213.232.1 ID=mRNA_H-canaliculatus_F_contig10213.232.1|Name=mRNA_H-canaliculatus_F_contig10213.232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10213:180..1261- (Hapterophycus canaliculatus Oshoro5f female)back to top |