Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 562 |
Cds size | 318 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928649.5370817-UTR-H-canaliculatus_F_contig1021:17452..17500 | 1622928649.5370817-UTR-H-canaliculatus_F_contig1021:17452..17500 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 17453..17500 + |
1696845513.1306183-UTR-H-canaliculatus_F_contig1021:17452..17500 | 1696845513.1306183-UTR-H-canaliculatus_F_contig1021:17452..17500 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 17453..17500 + |
1622928649.5588017-UTR-H-canaliculatus_F_contig1021:17818..18014 | 1622928649.5588017-UTR-H-canaliculatus_F_contig1021:17818..18014 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 17819..18014 + |
1696845513.151417-UTR-H-canaliculatus_F_contig1021:17818..18014 | 1696845513.151417-UTR-H-canaliculatus_F_contig1021:17818..18014 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 17819..18014 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928649.5477436-CDS-H-canaliculatus_F_contig1021:17500..17818 | 1622928649.5477436-CDS-H-canaliculatus_F_contig1021:17500..17818 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1021 17501..17818 + |
1696845513.140076-CDS-H-canaliculatus_F_contig1021:17500..17818 | 1696845513.140076-CDS-H-canaliculatus_F_contig1021:17500..17818 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1021 17501..17818 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1021.227.1 >prot_H-canaliculatus_F_contig1021.227.1 ID=prot_H-canaliculatus_F_contig1021.227.1|Name=mRNA_H-canaliculatus_F_contig1021.227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
MRGWGKNMGPASGGHISQARNHLFLSSNMPGMTSAPTRISSVFTPFRIAR VIYVRCPTRSDRKGRVRLWGQVSVLRRTLPQSLQIFIAVPLGLMPISAPF RGKVA* back to topmRNA from alignment at H-canaliculatus_F_contig1021:17453..18014+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1021.227.1 ID=mRNA_H-canaliculatus_F_contig1021.227.1|Name=mRNA_H-canaliculatus_F_contig1021.227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=562bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:17453..18014+ (Hapterophycus canaliculatus Oshoro5f female) GCCGATCATGTGAGGGGGTCGAGGACGGGGGAATTAGTAAGCCGACGGAT
GAGAGGTTGGGGGAAGAATATGGGGCCGGCCTCCGGAGGGCACATATCTC
AGGCAAGGAATCACTTGTTTCTCTCAAGCAACATGCCTGGGATGACTTCC
GCTCCCACGAGGATCTCATCGGTTTTCACTCCGTTTAGAATCGCTCGAGT
CATCTACGTTCGGTGCCCCACGCGATCAGACAGGAAGGGAAGGGTTCGAC
TTTGGGGACAAGTGTCCGTTTTGCGTCGCACCCTTCCCCAGAGCCTTCAA
ATTTTCATCGCAGTTCCGTTGGGGTTGATGCCAATCTCCGCACCATTCAG
AGGCAAAGTTGCCTAGAAGGGCTTGGCGTGTGTTCCCTCCCCCCGGGACA
AAAAAAGGGGCCATCCACCCCCACCAAAAGCGGCAACGCTCTGGAAACGT
CATTACAGGGTTGCACTCGTCTAACACTTTTTCCGTGGTCGACCCTTCAT
GCTAGGTCAACCAGGACCGCAGAGGAAGGTTTCCCTCCACTCTTTTGAAA
CTCAGGGACACG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1021:17453..18014+ >mRNA_H-canaliculatus_F_contig1021.227.1 ID=mRNA_H-canaliculatus_F_contig1021.227.1|Name=mRNA_H-canaliculatus_F_contig1021.227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:17453..18014+ (Hapterophycus canaliculatus Oshoro5f female) ATGAGAGGTTGGGGGAAGAATATGGGGCCGGCCTCCGGAGGGCACATATC TCAGGCAAGGAATCACTTGTTTCTCTCAAGCAACATGCCTGGGATGACTT CCGCTCCCACGAGGATCTCATCGGTTTTCACTCCGTTTAGAATCGCTCGA GTCATCTACGTTCGGTGCCCCACGCGATCAGACAGGAAGGGAAGGGTTCG ACTTTGGGGACAAGTGTCCGTTTTGCGTCGCACCCTTCCCCAGAGCCTTC AAATTTTCATCGCAGTTCCGTTGGGGTTGATGCCAATCTCCGCACCATTC AGAGGCAAAGTTGCCTAGATGAGAGGTTGGGGGAAGAATATGGGGCCGGC CTCCGGAGGGCACATATCTCAGGCAAGGAATCACTTGTTTCTCTCAAGCA ACATGCCTGGGATGACTTCCGCTCCCACGAGGATCTCATCGGTTTTCACT CCGTTTAGAATCGCTCGAGTCATCTACGTTCGGTGCCCCACGCGATCAGA CAGGAAGGGAAGGGTTCGACTTTGGGGACAAGTGTCCGTTTTGCGTCGCA CCCTTCCCCAGAGCCTTCAAATTTTCATCGCAGTTCCGTTGGGGTTGATG CCAATCTCCGCACCATTCAGAGGCAAAGTTGCCTAG back to top
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