Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 1 |
| Model size | 840 |
| Cds size | 492 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928648.2564857-UTR-H-canaliculatus_F_contig102:37930..38278 | 1622928648.2564857-UTR-H-canaliculatus_F_contig102:37930..38278 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig102 37931..38278 + |
| 1696845512.2614822-UTR-H-canaliculatus_F_contig102:37930..38278 | 1696845512.2614822-UTR-H-canaliculatus_F_contig102:37930..38278 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig102 37931..38278 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928648.271096-CDS-H-canaliculatus_F_contig102:38278..38770 | 1622928648.271096-CDS-H-canaliculatus_F_contig102:38278..38770 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig102 38279..38770 + |
| 1696845512.2700052-CDS-H-canaliculatus_F_contig102:38278..38770 | 1696845512.2700052-CDS-H-canaliculatus_F_contig102:38278..38770 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig102 38279..38770 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig102.217.1 >prot_H-canaliculatus_F_contig102.217.1 ID=prot_H-canaliculatus_F_contig102.217.1|Name=mRNA_H-canaliculatus_F_contig102.217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MLNRMRPQYLSCAEILHSRRKCSLELHMHAILRKYHPQTFLRQVPTSVVS
AATTQTPDISLVERVGGALIVTLQLHHAENNLSRLLQPYPCSLSARDHSL
ICPRSLLCFRLLFLCCSPSLCCAMVKMSAGAPERKLKPTQKRGGSLCSCL
FESTPWRVHPTFR* back to topmRNA from alignment at H-canaliculatus_F_contig102:37931..38770+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig102.217.1 ID=mRNA_H-canaliculatus_F_contig102.217.1|Name=mRNA_H-canaliculatus_F_contig102.217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:37931..38770+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTTTATACGAAGACTGGTGGAATGCGCGACTTGCCGTGTGGCCACGGA
TAGTTGTCAAACGCTGCTTGCAGCTTTCATCTAAGGGAGCGATGCTATAC
TGCCAACGGATCAGGGTTCCAGATGGTCAGGATCGGGCTTGAAGCCACAT
GGGGCTGCTGTAGCGAGCTGTGCCCTGCGTTTGGAGTTGTTGGCACAGCT
GGGGTGATTGCGGTATTTCCAAACCAAACTACGGCGCGCTGCGTAATCAA
GTCTTTTCTGTGAGTTCAACAGCACATATGCTTTCTACACATGGCACAGA
CAGAAGTAGCACCATAGGCTTAATACCGGTTTCACTACGGTACTGCCGAT
GTTGAACAGAATGCGACCACAGTACCTATCCTGCGCCGAAATTCTACACT
CCAGACGAAAGTGCTCACTTGAACTGCATATGCATGCTATCCTCCGCAAA
TATCACCCCCAGACTTTCCTTCGTCAAGTCCCGACATCTGTTGTTTCCGC
CGCGACCACGCAGACTCCCGACATATCCTTGGTCGAGAGAGTTGGCGGTG
CCTTGATTGTGACTCTCCAACTCCATCATGCCGAAAATAATCTGTCACGA
CTGCTCCAGCCCTACCCGTGCAGCTTGAGTGCTCGCGATCACTCTCTAAT
TTGTCCCAGATCCCTCCTATGTTTCCGTCTCCTATTTCTCTGTTGCTCTC
CGAGTTTGTGTTGTGCAATGGTCAAGATGTCGGCGGGAGCCCCAGAGCGA
AAATTGAAACCGACACAAAAACGCGGCGGATCTTTATGTTCCTGTTTGTT
TGAATCTACACCCTGGCGAGTGCACCCTACCTTTAGATGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig102:37931..38770+ >mRNA_H-canaliculatus_F_contig102.217.1 ID=mRNA_H-canaliculatus_F_contig102.217.1|Name=mRNA_H-canaliculatus_F_contig102.217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:37931..38770+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGAACAGAATGCGACCACAGTACCTATCCTGCGCCGAAATTCTACA
CTCCAGACGAAAGTGCTCACTTGAACTGCATATGCATGCTATCCTCCGCA
AATATCACCCCCAGACTTTCCTTCGTCAAGTCCCGACATCTGTTGTTTCC
GCCGCGACCACGCAGACTCCCGACATATCCTTGGTCGAGAGAGTTGGCGG
TGCCTTGATTGTGACTCTCCAACTCCATCATGCCGAAAATAATCTGTCAC
GACTGCTCCAGCCCTACCCGTGCAGCTTGAGTGCTCGCGATCACTCTCTA
ATTTGTCCCAGATCCCTCCTATGTTTCCGTCTCCTATTTCTCTGTTGCTC
TCCGAGTTTGTGTTGTGCAATGGTCAAGATGTCGGCGGGAGCCCCAGAGC
GAAAATTGAAACCGACACAAAAACGCGGCGGATCTTTATGTTCCTGTTTG
TTTGAATCTACACCCTGGCGAGTGCACCCTACCTTTAGATGAATGTTGAA
CAGAATGCGACCACAGTACCTATCCTGCGCCGAAATTCTACACTCCAGAC
GAAAGTGCTCACTTGAACTGCATATGCATGCTATCCTCCGCAAATATCAC
CCCCAGACTTTCCTTCGTCAAGTCCCGACATCTGTTGTTTCCGCCGCGAC
CACGCAGACTCCCGACATATCCTTGGTCGAGAGAGTTGGCGGTGCCTTGA
TTGTGACTCTCCAACTCCATCATGCCGAAAATAATCTGTCACGACTGCTC
CAGCCCTACCCGTGCAGCTTGAGTGCTCGCGATCACTCTCTAATTTGTCC
CAGATCCCTCCTATGTTTCCGTCTCCTATTTCTCTGTTGCTCTCCGAGTT
TGTGTTGTGCAATGGTCAAGATGTCGGCGGGAGCCCCAGAGCGAAAATTG
AAACCGACACAAAAACGCGGCGGATCTTTATGTTCCTGTTTGTTTGAATC
TACACCCTGGCGAGTGCACCCTACCTTTAGATGA back to top
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