mRNA_H-canaliculatus_F_contig1019.211.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1019.211.1 vs. uniprot
Match: UPI001FE582CD (hypothetical protein n=1 Tax=Paenibacillus kobensis TaxID=59841 RepID=UPI001FE582CD) HSP 1 Score: 59.7 bits (143), Expect = 1.950e-6 Identity = 52/168 (30.95%), Postives = 73/168 (43.45%), Query Frame = 2 Query: 737 LPEHEQKSDKGSPATSACKRRTVFRSNGGLVSPNGRYTFVQHNDNELVIYDREGGK-IWSCP----GSKAVDVRNPEAEKEMNTVFTEFQHDGALVQYAERKSK-------GWGGQGKEV---------LWRSHSAGPPNGDRLVMQDDGNLVIYNSKTLEVAWESGT 1177
LP +++G+ T+A T F L+S NG Y + +D VIY GK +WS G+ + +Q+ + +YA R GWG K V +W S++ G G+ LVMQDDGNLVIYN+ T + W SGT
Sbjct: 24 LPASAFAANQGNYITNA--NNTSFAKGDYLLSQNGLYKAIWQDDGNFVIYRTYNGKSMWSSSTNGKGANQFXXXXXXXXXXXSNTKVVYQN---VYEYAYRFDPFTGTYAWGWGYTLKPVVVTTTTPVAIWASNTGGTGAGNTLVMQDDGNLVIYNA-TGKALWSSGT 185
BLAST of mRNA_H-canaliculatus_F_contig1019.211.1 vs. uniprot
Match: A0A5S5D587_9ACTN (Reprolysin-like metallo-peptidase family M12B n=1 Tax=Blastococcus xanthinilyticus TaxID=1564164 RepID=A0A5S5D587_9ACTN) HSP 1 Score: 61.2 bits (147), Expect = 8.350e-6 Identity = 41/121 (33.88%), Postives = 56/121 (46.28%), Query Frame = 2 Query: 824 LVSPNGRYTFVQHNDNELVIYDREGGKIWS----CPGSKAVDVRNPEAEKEMNTVFTEFQHDGALVQYAERKSKGWGGQGKEVLWRSHSAGPPNGDRLVMQDDGNLVIYNSKTLEVAWESG 1174
L SPNGRY V +D V+Y +G +W+ PG++ V DG LV + G +LW+S +AG G R+VMQDDGNLV+Y + AW +G
Sbjct: 476 LRSPNGRYRAVFQSDGNFVVYAPDGRALWASGVYAPGTQTV-----------------LGADGNLVTVS----------GSRILWQSGTAGNA-GARVVMQDDGNLVLYRANG-SAAWSTG 567 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1019.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1019.211.1 >prot_H-canaliculatus_F_contig1019.211.1 ID=prot_H-canaliculatus_F_contig1019.211.1|Name=mRNA_H-canaliculatus_F_contig1019.211.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=296bp MMVATLPPQKGERTTSSFFRETRDLPRFEEHGYVSRHVSEKSLEAAWQARback to top mRNA from alignment at H-canaliculatus_F_contig1019:975..6845+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1019.211.1 ID=mRNA_H-canaliculatus_F_contig1019.211.1|Name=mRNA_H-canaliculatus_F_contig1019.211.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5871bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1019:975..6845+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1019:975..6845+ >mRNA_H-canaliculatus_F_contig1019.211.1 ID=mRNA_H-canaliculatus_F_contig1019.211.1|Name=mRNA_H-canaliculatus_F_contig1019.211.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1776bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1019:975..6845+ (Hapterophycus canaliculatus Oshoro5f female)back to top |