Homology
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)
HSP 1 Score: 164 bits (415), Expect = 4.420e-45
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVGGD 279
GVFD+LCSHLERGHEQLGRLEKKMEKDRLTNG+LTEEKE+NLEESRK YE LLGNVTSLASSLNRDMP LPE E EEEG GGISLWEGGVGGD
Sbjct: 680 GVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGD 772
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)
HSP 1 Score: 91.7 bits (226), Expect = 1.420e-19
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVG 273
GV L HL H+ L +LE++MEKDRL GSLTEEKE+NLE S AY LL NV +L+ +L+ DMP LPE +EEEE GG+ LW GVG
Sbjct: 260 GVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEE-LGGVELWSSGVG 349
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A7S1ZWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWS9_9STRA)
HSP 1 Score: 65.9 bits (159), Expect = 1.550e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 258
G + +L S H +L +LEK+ E+D+L GSL+E +EK L+++RK ET+ +V +LA SLN+D+P L E+E G GG + LW
Sbjct: 312 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 403
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A7S4QUB8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUB8_9STRA)
HSP 1 Score: 65.9 bits (159), Expect = 1.610e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 258
G + +L S H +L +LEK+ E+D+L GSL+E +EK L+++RK ET+ +V +LA SLN+D+P L E+E G GG + LW
Sbjct: 361 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 452
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A8J2S5M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5M1_9STRA)
HSP 1 Score: 61.2 bits (147), Expect = 6.940e-9
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 16 LCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPL--PEQEEEEEGPGGISLW 258
+ S L HE L LE+K +D L +GSLTEEKEK LE++RKA E L+ V++L +L+ D P L + EEE+ G +SLW
Sbjct: 365 VSSKLLSDHEALRSLERKAARDALNHGSLTEEKEKALEDARKAREKLVKEVSALCDALDIDPPVLLDGDDSEEEDDKGELSLW 447
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A6V0BH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BH58_9STRA)
HSP 1 Score: 58.2 bits (139), Expect = 8.260e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 258
G ++ L L + +L ++EK+ E+DRL GSLTE +EK L+++RK ETL +V +++ ++ +P L E EEE EG G+ +W
Sbjct: 486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A6V0BI57_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BI57_9STRA)
HSP 1 Score: 58.2 bits (139), Expect = 8.370e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 258
G ++ L L + +L ++EK+ E+DRL GSLTE +EK L+++RK ETL +V +++ ++ +P L E EEE EG G+ +W
Sbjct: 486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA)
HSP 1 Score: 56.2 bits (134), Expect = 4.010e-7
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQE-EEEEGPG-GISLW 258
G F +L L H +L +LEK+ E+DRL GSLTE ++K L+++RK ++ L +V + L+ P L E++ EEEE G G+ +W
Sbjct: 396 GAFGTLSKSLVETHGKLRKLEKRCEQDRLLAGSLTEARQKGLDDARKLFDNLQKSVEVIGDLLDLKPPVLNEEDDEEEEAKGSGLEVW 483
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
A0A1E7FX38_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX38_9STRA)
HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEE-EGPGGISLW 258
G + L L +L ++EK+ E DRL GSLTE +EK L+++RK E+L +V +++ L+ MP L + +EEE EG G+ +W
Sbjct: 385 GAYGFLSKSLVNTDAKLQKMEKRCETDRLLAGSLTEAREKGLQDARKLRESLQKSVEAMSDILDLIMPHLEKNKEEETEGGTGVEVW 471
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match:
K3XA48_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA48_GLOUD)
HSP 1 Score: 53.5 bits (127), Expect = 3.510e-6
Identity = 26/86 (30.23%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 7 FDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEG 264
++ +C H +LE + E++ G +++ + LE ++ +E L +V SLA +L+R++PPLP ++++ GG+S+WEG
Sbjct: 294 YEMICKFYLAQHATFVKLEARNEREEANRGEVSDAHMQELENAKLLFEKLQTSVNSLADALDREVPPLPLNKDDDGNGGGLSVWEG 379
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90 )
Total hits: 13
0 1 Expect = 4.42e-45 / Id = 90.32 Expect = 1.42e-19 / Id = 57.14 Expect = 1.55e-10 / Id = 41.30 Expect = 1.61e-10 / Id = 41.30 Expect = 6.94e-9 / Id = 46.99 Expect = 8.26e-8 / Id = 39.08 Expect = 8.37e-8 / Id = 39.08 Expect = 4.01e-7 / Id = 39.77 Expect = 1.02e-6 / Id = 39.08 Expect = 3.51e-6 / Id = 30.23 Sequence D8LEF3_ECTSI A0A835YRH9_9STRA A0A7S1ZWS9_9STRA A0A7S4QUB8_9STRA A0A8J2S5M1_9STRA A0A6V0BH58_9STRA A0A6V0BI57_9STRA A0A6U5Q234_9STRA A0A1E7FX38_9STRA K3XA48_GLOUD Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 166.4 Seed ortholog evalue 6.4e-39 Seed eggNOG ortholog 2880.D8LEF3 Preferred name UPF2 KEGG ko ko:K14327 KEGG Pathway ko03013,ko03015,map03013,map03015 KEGG Module M00430 GOs GO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904 EggNOG free text desc. nuclear-transcribed mRNA catabolic process, nonsense-mediated decay EggNOG OGs KOG2051@1,KOG2051@2759 Ec32 ortholog description MIF4-like, type 1/2/3 Ec32 ortholog Ec-00_002070.1 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko03019 Hectar predicted targeting category other localisation Exons 2 Model size 279 Cds size 279 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622928647.2270446-CDS-H-canaliculatus_F_contig10189:113..307 1622928647.2270446-CDS-H-canaliculatus_F_contig10189:113..307 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10189 114..307 + 1696845511.984578-CDS-H-canaliculatus_F_contig10189:113..307 1696845511.984578-CDS-H-canaliculatus_F_contig10189:113..307 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10189 114..307 + 1622928647.2409024-CDS-H-canaliculatus_F_contig10189:621..706 1622928647.2409024-CDS-H-canaliculatus_F_contig10189:621..706 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10189 622..706 + 1696845511.99609-CDS-H-canaliculatus_F_contig10189:621..706 1696845511.99609-CDS-H-canaliculatus_F_contig10189:621..706 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10189 622..706 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10189.209.1
>prot_H-canaliculatus_F_contig10189.209.1 ID=prot_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYE back to top mRNA from alignment at H-canaliculatus_F_contig10189:114..706+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10189.209.1 ID=mRNA_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=593bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:114..706+ (Hapterophycus canaliculatus Oshoro5f female)GGGGTGTTCGACTCGCTTTGCTCGCACCTTGAGCGTGGCCACGAGCAGCT
GGGACGCCTAGAGAAGAAGATGGAGAAGGACCGGCTGACGAACGGATCGC
TGACGGAGGAGAAGGAGAAGAACTTGGAGGAGAGCCGGAAGGCGTACGAG
ACGCTGCTGGGAAACGTCACCTCGCTGGCTTCTTCTCTCAACAG GTGACG
GGGGCGATCGCCGCGGGCGGCGCGGCGTTGTTGTCGCGGTGACCAGAGGA
CCGCCCGATTGGAAGCATGTGGTATCGTTGTTGTGGTGGTGGTTGTTGTT
GTTTGCTGTGGGAGAAGCGGGGCGATACACACGACAGACAGGAAAACCCG
CAGACAGGCTGAAAAACCAGCGCCGGGGGTAGCGGCACCGGCGTTGCCAA
CAGGATAATCTCCGAGGGTTCAGCAGGCACTAGCACTTGTTTTCCTTTTT
TGTGTATCTTGAGTGTCTCGCGGCCGCCGGTGGTGTCGCTTTACCACTGG
TTTTGCAGGGACATGCCGCCGCTGCCGGAGCAGGAAGAGGAAGAGGAAGG
CCCCGGAGGGATTAGCCTGTGGGAGGGCGGTGTCGGGGGGGAC back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10189:114..706+
>mRNA_H-canaliculatus_F_contig10189.209.1 ID=mRNA_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:114..706+ (Hapterophycus canaliculatus Oshoro5f female) back to top