Homology
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI)
HSP 1 Score: 142 bits (359), Expect = 5.330e-39
Identity = 68/83 (81.93%), Postives = 76/83 (91.57%), Query Frame = 1
Query: 1 KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+VREVT+IK A+VPLVKF HV SG+QVDVCFDQ G+ SG+AA+ MMRQMQPVRPLVMVLKAYMGQRKLNETYHGG+GSFLLQ
Sbjct: 351 EVREVTVIKSARVPLVKFVHVGSGVQVDVCFDQESGMKSGRAARAMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGVGSFLLQ 433
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE)
HSP 1 Score: 140 bits (352), Expect = 2.680e-37
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 1
Query: 1 KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+VREVT+IK A+VPLVKF HV SG+QVDVCFDQ G+ SG+AA+ MMRQMQPVRPLVMVLKAYM QRKLNETYHGGIGSFLLQ
Sbjct: 272 EVREVTVIKKARVPLVKFVHVGSGVQVDVCFDQESGMQSGRAARAMMRQMQPVRPLVMVLKAYMAQRKLNETYHGGIGSFLLQ 354
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
A0A3M6VIB7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIB7_9STRA)
HSP 1 Score: 87.4 bits (215), Expect = 2.580e-18
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GGIGSFLLQ
Sbjct: 213 VIDKARIPIVKMVHKTSDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKCFMAQRGLNETYSGGIGSFLLQ 289
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
A0A484DRJ3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRJ3_BRELC)
HSP 1 Score: 87.4 bits (215), Expect = 2.720e-18
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H SGI VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct: 255 VIDKARIPIVKMVHKVSGIHVDVSFNIAGGLATGDLVKHFMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 331
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
A0A7S4DIS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIS6_HETAK)
HSP 1 Score: 86.7 bits (213), Expect = 3.680e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H S + VD+ F+Q GLA+G + MR+ PVRPL++V K ++ QR+LNETY GG+GSFLLQ
Sbjct: 183 VIDSARIPIVKLRHKESQVHVDISFNQPSGLATGACVQRFMRKFPPVRPLLLVAKKFLQQRELNETYTGGVGSFLLQ 259
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
M4B1R5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1R5_HYAAE)
HSP 1 Score: 86.7 bits (213), Expect = 5.010e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct: 236 VIHKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHFMRVYPSFRPLTLVLKYFMAQRGLNETYSGGVGSFLLQ 312
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
A0A0W8D8H1_PHYNI (Non-canonical poly(A) RNA polymerase PAPD5 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D8H1_PHYNI)
HSP 1 Score: 86.3 bits (212), Expect = 6.630e-18
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct: 213 VIDKARIPIVKMVHKESNIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYSGGVGSFLLQ 289
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
H3GMU5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMU5_PHYRM)
HSP 1 Score: 85.9 bits (211), Expect = 9.090e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct: 213 VIDKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 289
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
G4YH03_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YH03_PHYSP)
HSP 1 Score: 85.9 bits (211), Expect = 9.220e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct: 222 VIDKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 298
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match:
A0A225WB21_9STRA (Poly(A) RNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WB21_9STRA)
HSP 1 Score: 85.1 bits (209), Expect = 1.690e-17
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
+I A++P+VK H SS I VDV F+ AGGLA+G K MR RPL +VLK + QR LNETY GG+GSFLLQ
Sbjct: 207 VIDKARIPIVKMVHKSSDIHVDVSFNVAGGLATGDLVKHYMRVYPAFRPLTLVLKYFTAQRGLNETYSGGVGSFLLQ 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90 )
Total hits: 25
0 1 Expect = 5.33e-39 / Id = 81.93 Expect = 2.68e-37 / Id = 81.93 Expect = 2.58e-18 / Id = 57.14 Expect = 2.72e-18 / Id = 57.14 Expect = 3.68e-18 / Id = 50.65 Expect = 5.01e-18 / Id = 55.84 Expect = 6.63e-18 / Id = 55.84 Expect = 9.09e-18 / Id = 55.84 Expect = 9.22e-18 / Id = 55.84 Expect = 1.69e-17 / Id = 55.84 Sequence D8LPV2_ECTSI A0A6H5K966_9PHAE A0A3M6VIB7_9STRA A0A484DRJ3_BRELC A0A7S4DIS6_HETAK M4B1R5_HYAAE A0A0W8D8H1_PHYNI H3GMU5_PHYRM G4YH03_PHYSP A0A225WB21_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 143.7 Seed ortholog evalue 3.9e-32 Seed eggNOG ortholog 2880.D8LPV2 KEGG ko ko:K03514,ko:K11700 KEGG Pathway ko03018,map03018 KEGG Module M00393 GOs GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141 EggNOG free text desc. RNA uridylyltransferase activity EggNOG OGs COG5260@1,KOG1906@2759 EC 2.7.7.19 COG Functional cat. L Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036 Hectar predicted targeting category other localisation Exons 2 Model size 249 Cds size 249 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622928646.866209-CDS-H-canaliculatus_F_contig10177:4144..4237 1622928646.866209-CDS-H-canaliculatus_F_contig10177:4144..4237 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10177 4145..4237 - 1696845511.7944481-CDS-H-canaliculatus_F_contig10177:4144..4237 1696845511.7944481-CDS-H-canaliculatus_F_contig10177:4144..4237 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10177 4145..4237 - 1622928646.8769338-CDS-H-canaliculatus_F_contig10177:4907..5063 1622928646.8769338-CDS-H-canaliculatus_F_contig10177:4907..5063 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10177 4908..5063 - 1696845511.813209-CDS-H-canaliculatus_F_contig10177:4907..5063 1696845511.813209-CDS-H-canaliculatus_F_contig10177:4907..5063 Hapterophycus canaliculatus Oshoro5f female CDS H-canaliculatus_F_contig10177 4908..5063 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10177.203.1
>prot_H-canaliculatus_F_contig10177.203.1 ID=prot_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQM back to top mRNA from alignment at H-canaliculatus_F_contig10177:4145..5063-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10177.203.1 ID=mRNA_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=919bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10177:4145..5063- (Hapterophycus canaliculatus Oshoro5f female)AAGGTGCGGGAGGTGACATTGATCAAAGGGGCGAAGGTTCCCCTCGTGAA
GTTCACGCACGTCTCTTCCGGCATCCAGGTGGACGTGTGCTTCGACCAGG
CCGGAGGTCTAGCGTCGGGAAAGGCGGCCAAGGACATGATGCGCCAGATG
CAACCG GTGGGTGGGCTCGTTGGCCTCGGCCGGCCGAAGCCCTGCCGTGT
CTCAGATAGTCGGTCGACTCGTCGTCCTTCGGATCTAGGTTCACAGTCGT
TCGAAGCAGATTCGCTCGTTCAGGAACAGTGCTGAGCGCCGTGCCTGCAC
GGGCGGTGCGGTAGACGTGGGGTACCGCACGCGTCGTAAGTGTGCGTTGC
GTCGTGCGGGCGTACCCAGTAAGGTGAGACCTCACGAGTCGTCCTTTCGT
GGCGAGACCGCCCCCCCCCAACCCCGCCGCCCTTCGGGACCCCTTCCCCC
CACCCACAAGGGGGCACACGGATGACAATGACGGATTATCACGCGCAAAC
TACTTGAAGCTCGATATCGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGTT
CGCCACACTTATTCCCACATACTGTACAGGGGGGACGTTCGATACTCACC
CCCTCCTGGGTCTACCGGGGAGAGCGCGTCCTGAATCAAATCTATGTCAA
GTTCATCGGTGCGCCTTTTTTCAAACATCACCACGCGTCCATAGGGCCGA
GAAAAAGAGGAGAGGTGGGGGGGATGAGCGTCCTTGATTGTCATCCGCGC
GCCCTCTTGCACCCAACACCCAAGAACCCCACCTCTGATACCTTACAACC
GACGCACATCGGAAACACCCGCGCAGGTGCGACCTTTGGTGATGGTGCTC
AAGGCCTACATGGGGCAGCGGAAGCTCAACGAGACCTACCACGGGGGAAT
CGGCTCCTTTCTCCTGCAG back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10177:4145..5063-
>mRNA_H-canaliculatus_F_contig10177.203.1 ID=mRNA_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10177:4145..5063- (Hapterophycus canaliculatus Oshoro5f female) back to top